data_7BDF
#
_model_server_result.job_id            UfL1b-sYQFndNv1anODNbQ 
_model_server_result.datetime_utc      '2024-11-13 05:36:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":506}' 
#
_entry.id    7BDF 
#
_exptl.entry_id    7BDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              234.251 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(2-phenoxyethanoyl)piperazin-2-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BDF 
_cell.length_a            59.823 
_cell.length_b            73.452 
_cell.length_c            78.588 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C12 H14 N2 O3' 
_chem_comp.formula_weight    234.251 
_chem_comp.id                TEH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(2-phenoxyethanoyl)piperazin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C03 C02 TEH doub 333 n y 
C03 C04 TEH sing 334 n y 
C02 C01 TEH sing 335 n y 
O07 C04 TEH sing 336 n n 
O07 C08 TEH sing 337 n n 
C04 C05 TEH doub 338 n y 
O10 C09 TEH doub 339 n n 
O16 C15 TEH doub 340 n n 
C01 C06 TEH doub 341 n y 
C09 C08 TEH sing 342 n n 
C09 N11 TEH sing 343 n n 
C15 N14 TEH sing 344 n n 
C15 C17 TEH sing 345 n n 
C12 N11 TEH sing 346 n n 
C12 C13 TEH sing 347 n n 
N11 C17 TEH sing 348 n n 
N14 C13 TEH sing 349 n n 
C05 C06 TEH sing 350 n y 
C13 H1 TEH sing 351 n n 
C13 H2 TEH sing 352 n n 
C17 H3 TEH sing 353 n n 
C17 H4 TEH sing 354 n n 
C01 H5 TEH sing 355 n n 
C02 H6 TEH sing 356 n n 
C03 H7 TEH sing 357 n n 
C05 H8 TEH sing 358 n n 
C06 H9 TEH sing 359 n n 
C08 H10 TEH sing 360 n n 
C08 H11 TEH sing 361 n n 
C12 H12 TEH sing 362 n n 
C12 H13 TEH sing 363 n n 
N14 H14 TEH sing 364 n n 
#
_atom_sites.entry_id                     7BDF 
_atom_sites.fract_transf_matrix[1][1]    0.016716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013614 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 DMS A 1 503 1501 DMS DMS . 
E 2 SO4 A 1 504 8 SO4 SO4 . 
F 2 SO4 A 1 505 10 SO4 SO4 . 
G 5 TEH A 1 506 1 TEH LIG . 
H 6 HOH A 1 601 1086 HOH HOH . 
H 6 HOH A 2 602 1031 HOH HOH . 
H 6 HOH A 3 603 25 HOH HOH . 
H 6 HOH A 4 604 1118 HOH HOH . 
H 6 HOH A 5 605 1123 HOH HOH . 
H 6 HOH A 6 606 1047 HOH HOH . 
H 6 HOH A 7 607 1050 HOH HOH . 
H 6 HOH A 8 608 23 HOH HOH . 
H 6 HOH A 9 609 1159 HOH HOH . 
H 6 HOH A 10 610 1196 HOH HOH . 
H 6 HOH A 11 611 1133 HOH HOH . 
H 6 HOH A 12 612 17 HOH HOH . 
H 6 HOH A 13 613 1001 HOH HOH . 
H 6 HOH A 14 614 1008 HOH HOH . 
H 6 HOH A 15 615 1003 HOH HOH . 
H 6 HOH A 16 616 1027 HOH HOH . 
H 6 HOH A 17 617 40 HOH HOH . 
H 6 HOH A 18 618 1045 HOH HOH . 
H 6 HOH A 19 619 1036 HOH HOH . 
H 6 HOH A 20 620 1033 HOH HOH . 
H 6 HOH A 21 621 1018 HOH HOH . 
H 6 HOH A 22 622 1048 HOH HOH . 
H 6 HOH A 23 623 1091 HOH HOH . 
H 6 HOH A 24 624 1059 HOH HOH . 
H 6 HOH A 25 625 1154 HOH HOH . 
H 6 HOH A 26 626 1029 HOH HOH . 
H 6 HOH A 27 627 1046 HOH HOH . 
H 6 HOH A 28 628 13 HOH HOH . 
H 6 HOH A 29 629 36 HOH HOH . 
H 6 HOH A 30 630 1019 HOH HOH . 
H 6 HOH A 31 631 18 HOH HOH . 
H 6 HOH A 32 632 1058 HOH HOH . 
H 6 HOH A 33 633 1040 HOH HOH . 
H 6 HOH A 34 634 1149 HOH HOH . 
H 6 HOH A 35 635 1197 HOH HOH . 
H 6 HOH A 36 636 1073 HOH HOH . 
H 6 HOH A 37 637 1070 HOH HOH . 
H 6 HOH A 38 638 1016 HOH HOH . 
H 6 HOH A 39 639 1190 HOH HOH . 
H 6 HOH A 40 640 1052 HOH HOH . 
H 6 HOH A 41 641 1004 HOH HOH . 
H 6 HOH A 42 642 57 HOH HOH . 
H 6 HOH A 43 643 1145 HOH HOH . 
H 6 HOH A 44 644 1125 HOH HOH . 
H 6 HOH A 45 645 1085 HOH HOH . 
H 6 HOH A 46 646 21 HOH HOH . 
H 6 HOH A 47 647 1064 HOH HOH . 
H 6 HOH A 48 648 11 HOH HOH . 
H 6 HOH A 49 649 22 HOH HOH . 
H 6 HOH A 50 650 12 HOH HOH . 
H 6 HOH A 51 651 28 HOH HOH . 
H 6 HOH A 52 652 1120 HOH HOH . 
H 6 HOH A 53 653 1007 HOH HOH . 
H 6 HOH A 54 654 1038 HOH HOH . 
H 6 HOH A 55 655 48 HOH HOH . 
H 6 HOH A 56 656 1051 HOH HOH . 
H 6 HOH A 57 657 1012 HOH HOH . 
H 6 HOH A 58 658 1098 HOH HOH . 
H 6 HOH A 59 659 56 HOH HOH . 
H 6 HOH A 60 660 1037 HOH HOH . 
H 6 HOH A 61 661 1011 HOH HOH . 
H 6 HOH A 62 662 1030 HOH HOH . 
H 6 HOH A 63 663 1063 HOH HOH . 
H 6 HOH A 64 664 29 HOH HOH . 
H 6 HOH A 65 665 26 HOH HOH . 
H 6 HOH A 66 666 1017 HOH HOH . 
H 6 HOH A 67 667 1065 HOH HOH . 
H 6 HOH A 68 668 7 HOH HOH . 
H 6 HOH A 69 669 1002 HOH HOH . 
H 6 HOH A 70 670 1083 HOH HOH . 
H 6 HOH A 71 671 1043 HOH HOH . 
H 6 HOH A 72 672 1062 HOH HOH . 
H 6 HOH A 73 673 1023 HOH HOH . 
H 6 HOH A 74 674 16 HOH HOH . 
H 6 HOH A 75 675 1068 HOH HOH . 
H 6 HOH A 76 676 1057 HOH HOH . 
H 6 HOH A 77 677 1041 HOH HOH . 
H 6 HOH A 78 678 1026 HOH HOH . 
H 6 HOH A 79 679 50 HOH HOH . 
H 6 HOH A 80 680 1078 HOH HOH . 
H 6 HOH A 81 681 1005 HOH HOH . 
H 6 HOH A 82 682 1020 HOH HOH . 
H 6 HOH A 83 683 1081 HOH HOH . 
H 6 HOH A 84 684 1039 HOH HOH . 
H 6 HOH A 85 685 1114 HOH HOH . 
H 6 HOH A 86 686 1006 HOH HOH . 
H 6 HOH A 87 687 1106 HOH HOH . 
H 6 HOH A 88 688 1015 HOH HOH . 
H 6 HOH A 89 689 1010 HOH HOH . 
H 6 HOH A 90 690 1074 HOH HOH . 
H 6 HOH A 91 691 1035 HOH HOH . 
H 6 HOH A 92 692 1054 HOH HOH . 
H 6 HOH A 93 693 34 HOH HOH . 
H 6 HOH A 94 694 4 HOH HOH . 
H 6 HOH A 95 695 30 HOH HOH . 
H 6 HOH A 96 696 1014 HOH HOH . 
H 6 HOH A 97 697 1013 HOH HOH . 
H 6 HOH A 98 698 6 HOH HOH . 
H 6 HOH A 99 699 1077 HOH HOH . 
H 6 HOH A 100 700 1067 HOH HOH . 
H 6 HOH A 101 701 1042 HOH HOH . 
H 6 HOH A 102 702 1191 HOH HOH . 
H 6 HOH A 103 703 1140 HOH HOH . 
H 6 HOH A 104 704 1142 HOH HOH . 
H 6 HOH A 105 705 1049 HOH HOH . 
H 6 HOH A 106 706 1022 HOH HOH . 
H 6 HOH A 107 707 1079 HOH HOH . 
H 6 HOH A 108 708 1198 HOH HOH . 
H 6 HOH A 109 709 1115 HOH HOH . 
H 6 HOH A 110 710 35 HOH HOH . 
H 6 HOH A 111 711 1155 HOH HOH . 
H 6 HOH A 112 712 1180 HOH HOH . 
H 6 HOH A 113 713 19 HOH HOH . 
H 6 HOH A 114 714 5 HOH HOH . 
H 6 HOH A 115 715 1162 HOH HOH . 
H 6 HOH A 116 716 51 HOH HOH . 
H 6 HOH A 117 717 1153 HOH HOH . 
H 6 HOH A 118 718 1129 HOH HOH . 
H 6 HOH A 119 719 42 HOH HOH . 
H 6 HOH A 120 720 33 HOH HOH . 
H 6 HOH A 121 721 1152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 TEH . . . G 5 11.068 -2.776 6.531 1 39.27 ? C13 TEH 506 A 1 
HETATM 2 C C15 TEH . . . G 5 10.817 -5.112 5.778 1 44.53 ? C15 TEH 506 A 1 
HETATM 3 C C17 TEH . . . G 5 9.339 -4.791 6.22 1 38.04 ? C17 TEH 506 A 1 
HETATM 4 C C01 TEH . . . G 5 1.803 -3.509 5.513 1 28.97 ? C01 TEH 506 A 1 
HETATM 5 C C02 TEH . . . G 5 2.106 -3.81 4.192 1 28.28 ? C02 TEH 506 A 1 
HETATM 6 C C03 TEH . . . G 5 3.398 -4.185 3.86 1 25.78 ? C03 TEH 506 A 1 
HETATM 7 C C04 TEH . . . G 5 4.377 -4.267 4.844 1 26.27 ? C04 TEH 506 A 1 
HETATM 8 C C05 TEH . . . G 5 4.073 -3.962 6.164 1 26.37 ? C05 TEH 506 A 1 
HETATM 9 C C06 TEH . . . G 5 2.781 -3.587 6.496 1 27.53 ? C06 TEH 506 A 1 
HETATM 10 C C08 TEH . . . G 5 6.545 -4.587 5.632 1 27.8 ? C08 TEH 506 A 1 
HETATM 11 C C09 TEH . . . G 5 7.439 -3.34 5.545 1 26.53 ? C09 TEH 506 A 1 
HETATM 12 C C12 TEH . . . G 5 9.809 -2.494 5.803 1 31.23 ? C12 TEH 506 A 1 
HETATM 13 N N11 TEH . . . G 5 8.857 -3.526 5.864 1 29.84 ? N11 TEH 506 A 1 
HETATM 14 N N14 TEH . . . G 5 11.785 -3.97 5.956 1 50.92 ? N14 TEH 506 A 1 
HETATM 15 O O07 TEH . . . G 5 5.688 -4.648 4.514 1 28.95 ? O07 TEH 506 A 1 
HETATM 16 O O10 TEH . . . G 5 7.002 -2.27 5.221 1 19.31 ? O10 TEH 506 A 1 
HETATM 17 O O16 TEH . . . G 5 11.135 -6.167 5.337 1 47.68 ? O16 TEH 506 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#