data_7BDJ # _model_server_result.job_id OicXbMshWd7Bs8OQBmPUJA _model_server_result.datetime_utc '2024-10-19 16:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2203}' # _entry.id 7BDJ # _exptl.entry_id 7BDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BDJ _cell.length_a 99.612 _cell.length_b 118.912 _cell.length_c 187.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 226 B ASP 615 1_555 E MG MG . B MG 2203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc2 A OE1 GLU 227 B GLU 616 1_555 E MG MG . B MG 2203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 A OD1 ASP 1065 B ASP 1454 1_555 F MG MG . B MG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc4 C O39 TGB . B TGB 2201 1_555 E MG MG . B MG 2203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 C O40 TGB . B TGB 2201 1_555 E MG MG . B MG 2203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 D O40 TGB . B TGB 2202 1_555 F MG MG . B MG 2204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BDJ _atom_sites.fract_transf_matrix[1][1] 0.010039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TGB B 1 2201 1 TGB LIG . D 3 TGB B 1 2202 1 TGB LIG . E 4 MG B 1 2203 1 MG MG . F 4 MG B 1 2204 1 MG MG . G 5 HOH B 1 2301 92 HOH HOH . G 5 HOH B 2 2302 167 HOH HOH . G 5 HOH B 3 2303 30 HOH HOH . G 5 HOH B 4 2304 4 HOH HOH . G 5 HOH B 5 2305 9 HOH HOH . G 5 HOH B 6 2306 146 HOH HOH . G 5 HOH B 7 2307 149 HOH HOH . G 5 HOH B 8 2308 60 HOH HOH . G 5 HOH B 9 2309 61 HOH HOH . G 5 HOH B 10 2310 57 HOH HOH . G 5 HOH B 11 2311 174 HOH HOH . G 5 HOH B 12 2312 36 HOH HOH . G 5 HOH B 13 2313 69 HOH HOH . G 5 HOH B 14 2314 91 HOH HOH . G 5 HOH B 15 2315 23 HOH HOH . G 5 HOH B 16 2316 18 HOH HOH . G 5 HOH B 17 2317 22 HOH HOH . G 5 HOH B 18 2318 160 HOH HOH . G 5 HOH B 19 2319 40 HOH HOH . G 5 HOH B 20 2320 95 HOH HOH . G 5 HOH B 21 2321 39 HOH HOH . G 5 HOH B 22 2322 16 HOH HOH . G 5 HOH B 23 2323 76 HOH HOH . G 5 HOH B 24 2324 121 HOH HOH . G 5 HOH B 25 2325 19 HOH HOH . G 5 HOH B 26 2326 56 HOH HOH . G 5 HOH B 27 2327 35 HOH HOH . G 5 HOH B 28 2328 32 HOH HOH . G 5 HOH B 29 2329 180 HOH HOH . G 5 HOH B 30 2330 145 HOH HOH . G 5 HOH B 31 2331 123 HOH HOH . G 5 HOH B 32 2332 3 HOH HOH . G 5 HOH B 33 2333 11 HOH HOH . G 5 HOH B 34 2334 34 HOH HOH . G 5 HOH B 35 2335 53 HOH HOH . G 5 HOH B 36 2336 29 HOH HOH . G 5 HOH B 37 2337 27 HOH HOH . G 5 HOH B 38 2338 115 HOH HOH . G 5 HOH B 39 2339 131 HOH HOH . G 5 HOH B 40 2340 68 HOH HOH . G 5 HOH B 41 2341 58 HOH HOH . G 5 HOH B 42 2342 2 HOH HOH . G 5 HOH B 43 2343 42 HOH HOH . G 5 HOH B 44 2344 67 HOH HOH . G 5 HOH B 45 2345 139 HOH HOH . G 5 HOH B 46 2346 21 HOH HOH . G 5 HOH B 47 2347 52 HOH HOH . G 5 HOH B 48 2348 135 HOH HOH . G 5 HOH B 49 2349 107 HOH HOH . G 5 HOH B 50 2350 10 HOH HOH . G 5 HOH B 51 2351 94 HOH HOH . G 5 HOH B 52 2352 59 HOH HOH . G 5 HOH B 53 2353 137 HOH HOH . G 5 HOH B 54 2354 159 HOH HOH . G 5 HOH B 55 2355 106 HOH HOH . G 5 HOH B 56 2356 70 HOH HOH . G 5 HOH B 57 2357 127 HOH HOH . G 5 HOH B 58 2358 66 HOH HOH . G 5 HOH B 59 2359 65 HOH HOH . G 5 HOH B 60 2360 120 HOH HOH . G 5 HOH B 61 2361 109 HOH HOH . G 5 HOH B 62 2362 177 HOH HOH . G 5 HOH B 63 2363 181 HOH HOH . G 5 HOH B 64 2364 17 HOH HOH . G 5 HOH B 65 2365 14 HOH HOH . G 5 HOH B 66 2366 144 HOH HOH . G 5 HOH B 67 2367 158 HOH HOH . G 5 HOH B 68 2368 124 HOH HOH . G 5 HOH B 69 2369 125 HOH HOH . G 5 HOH B 70 2370 126 HOH HOH . G 5 HOH B 71 2371 113 HOH HOH . G 5 HOH B 72 2372 168 HOH HOH . G 5 HOH B 73 2373 110 HOH HOH . G 5 HOH B 74 2374 122 HOH HOH . G 5 HOH B 75 2375 173 HOH HOH . G 5 HOH B 76 2376 20 HOH HOH . G 5 HOH B 77 2377 142 HOH HOH . G 5 HOH B 78 2378 117 HOH HOH . G 5 HOH B 79 2379 15 HOH HOH . G 5 HOH B 80 2380 1 HOH HOH . G 5 HOH B 81 2381 119 HOH HOH . G 5 HOH B 82 2382 49 HOH HOH . G 5 HOH B 83 2383 41 HOH HOH . G 5 HOH B 84 2384 64 HOH HOH . G 5 HOH B 85 2385 128 HOH HOH . G 5 HOH B 86 2386 5 HOH HOH . G 5 HOH B 87 2387 165 HOH HOH . G 5 HOH B 88 2388 48 HOH HOH . G 5 HOH B 89 2389 25 HOH HOH . G 5 HOH B 90 2390 130 HOH HOH . G 5 HOH B 91 2391 108 HOH HOH . G 5 HOH B 92 2392 24 HOH HOH . G 5 HOH B 93 2393 63 HOH HOH . G 5 HOH B 94 2394 176 HOH HOH . G 5 HOH B 95 2395 54 HOH HOH . G 5 HOH B 96 2396 166 HOH HOH . G 5 HOH B 97 2397 71 HOH HOH . G 5 HOH B 98 2398 169 HOH HOH . G 5 HOH B 99 2399 51 HOH HOH . G 5 HOH B 100 2400 140 HOH HOH . G 5 HOH B 101 2401 47 HOH HOH . G 5 HOH B 102 2402 114 HOH HOH . G 5 HOH B 103 2403 162 HOH HOH . G 5 HOH B 104 2404 26 HOH HOH . G 5 HOH B 105 2405 105 HOH HOH . G 5 HOH B 106 2406 45 HOH HOH . G 5 HOH B 107 2407 43 HOH HOH . G 5 HOH B 108 2408 157 HOH HOH . G 5 HOH B 109 2409 104 HOH HOH . G 5 HOH B 110 2410 182 HOH HOH . G 5 HOH B 111 2411 170 HOH HOH . G 5 HOH B 112 2412 118 HOH HOH . G 5 HOH B 113 2413 164 HOH HOH . G 5 HOH B 114 2414 133 HOH HOH . G 5 HOH B 115 2415 31 HOH HOH . G 5 HOH B 116 2416 116 HOH HOH . G 5 HOH B 117 2417 141 HOH HOH . G 5 HOH B 118 2418 62 HOH HOH . G 5 HOH B 119 2419 12 HOH HOH . G 5 HOH B 120 2420 136 HOH HOH . G 5 HOH B 121 2421 77 HOH HOH . G 5 HOH B 122 2422 134 HOH HOH . G 5 HOH B 123 2423 138 HOH HOH . H 5 HOH J 1 2401 80 HOH HOH . H 5 HOH J 2 2402 111 HOH HOH . H 5 HOH J 3 2403 84 HOH HOH . H 5 HOH J 4 2404 13 HOH HOH . H 5 HOH J 5 2405 102 HOH HOH . H 5 HOH J 6 2406 86 HOH HOH . H 5 HOH J 7 2407 78 HOH HOH . H 5 HOH J 8 2408 82 HOH HOH . H 5 HOH J 9 2409 93 HOH HOH . H 5 HOH J 10 2410 178 HOH HOH . H 5 HOH J 11 2411 85 HOH HOH . H 5 HOH J 12 2412 81 HOH HOH . H 5 HOH J 13 2413 83 HOH HOH . H 5 HOH J 14 2414 79 HOH HOH . H 5 HOH J 15 2415 150 HOH HOH . H 5 HOH J 16 2416 151 HOH HOH . H 5 HOH J 17 2417 152 HOH HOH . H 5 HOH J 18 2418 163 HOH HOH . H 5 HOH J 19 2419 50 HOH HOH . H 5 HOH J 20 2420 129 HOH HOH . H 5 HOH J 21 2421 112 HOH HOH . H 5 HOH J 22 2422 171 HOH HOH . H 5 HOH J 23 2423 172 HOH HOH . H 5 HOH J 24 2424 175 HOH HOH . H 5 HOH J 25 2425 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.832 _atom_site.Cartn_y -24.789 _atom_site.Cartn_z 2.278 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2203 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #