data_7BDO # _model_server_result.job_id Cq_ocBZPHLlOKbnCkmgYFw _model_server_result.datetime_utc '2024-11-26 05:27:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7BDO # _exptl.entry_id 7BDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.778 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BDO _cell.length_a 65.458 _cell.length_b 72.549 _cell.length_c 76.259 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H42 N6 O5 S' _chem_comp.formula_weight 622.778 _chem_comp.id TBK _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{S})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]imidazo[1,2-a]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C29 TBK sing 290 n y C30 C31 TBK doub 291 n y C29 C28 TBK doub 292 n y C31 C27 TBK sing 293 n y C28 N5 TBK sing 294 n y C27 N5 TBK sing 295 n y C27 N4 TBK doub 296 n y N5 C25 TBK sing 297 n y N4 C26 TBK sing 298 n y C25 C26 TBK doub 299 n y C25 C24 TBK sing 300 n n O4 C24 TBK doub 301 n n C24 N3 TBK sing 302 n n N3 C23 TBK sing 303 n n C19 C18 TBK doub 304 n y C19 C22 TBK sing 305 n y C23 C22 TBK sing 306 n n C18 C17 TBK sing 307 n y C22 C21 TBK doub 308 n y C7 C8 TBK sing 309 n n C7 C6 TBK sing 310 n n C8 C3 TBK sing 311 n n C17 C20 TBK doub 312 n y C17 C TBK sing 313 n n C21 C20 TBK sing 314 n y O C TBK doub 315 n n C6 N2 TBK sing 316 n n C N TBK sing 317 n n C3 N1 TBK sing 318 n n C3 C4 TBK sing 319 n n N1 C2 TBK sing 320 n n N C1 TBK sing 321 n n C4 N2 TBK sing 322 n n N2 S TBK sing 323 n n C1 C2 TBK sing 324 n n C1 C9 TBK sing 325 n n C2 O3 TBK doub 326 n n C13 C12 TBK sing 327 n n C13 C14 TBK sing 328 n n O2 S TBK doub 329 n n S O1 TBK doub 330 n n S C5 TBK sing 331 n n C12 C11 TBK sing 332 n n C11 C10 TBK sing 333 n n C11 C16 TBK sing 334 n n C14 C15 TBK sing 335 n n C10 C9 TBK sing 336 n n C15 C16 TBK sing 337 n n C1 H1 TBK sing 338 n n C3 H2 TBK sing 339 n n C5 H3 TBK sing 340 n n C5 H4 TBK sing 341 n n C5 H5 TBK sing 342 n n C6 H6 TBK sing 343 n n C6 H7 TBK sing 344 n n C28 H8 TBK sing 345 n n C26 H9 TBK sing 346 n n C29 H10 TBK sing 347 n n C30 H11 TBK sing 348 n n C20 H12 TBK sing 349 n n C13 H13 TBK sing 350 n n C13 H14 TBK sing 351 n n C12 H15 TBK sing 352 n n C12 H16 TBK sing 353 n n C9 H17 TBK sing 354 n n C9 H18 TBK sing 355 n n N H19 TBK sing 356 n n C10 H20 TBK sing 357 n n C10 H21 TBK sing 358 n n C11 H22 TBK sing 359 n n C14 H23 TBK sing 360 n n C14 H24 TBK sing 361 n n C15 H25 TBK sing 362 n n C15 H26 TBK sing 363 n n C16 H27 TBK sing 364 n n C16 H28 TBK sing 365 n n C18 H29 TBK sing 366 n n C19 H30 TBK sing 367 n n C21 H31 TBK sing 368 n n C23 H32 TBK sing 369 n n C23 H33 TBK sing 370 n n C31 H34 TBK sing 371 n n C4 H35 TBK sing 372 n n C4 H36 TBK sing 373 n n C7 H37 TBK sing 374 n n C7 H38 TBK sing 375 n n C8 H39 TBK sing 376 n n C8 H40 TBK sing 377 n n N1 H41 TBK sing 378 n n N3 H42 TBK sing 379 n n # _atom_sites.entry_id 7BDO _atom_sites.fract_transf_matrix[1][1] 0.015277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TBK A 1 401 401 TBK 471 . C 3 HOH A 1 501 48 HOH HOH . C 3 HOH A 2 502 75 HOH HOH . C 3 HOH A 3 503 23 HOH HOH . C 3 HOH A 4 504 38 HOH HOH . C 3 HOH A 5 505 8 HOH HOH . C 3 HOH A 6 506 56 HOH HOH . C 3 HOH A 7 507 19 HOH HOH . C 3 HOH A 8 508 16 HOH HOH . C 3 HOH A 9 509 42 HOH HOH . C 3 HOH A 10 510 25 HOH HOH . C 3 HOH A 11 511 104 HOH HOH . C 3 HOH A 12 512 65 HOH HOH . C 3 HOH A 13 513 61 HOH HOH . C 3 HOH A 14 514 68 HOH HOH . C 3 HOH A 15 515 20 HOH HOH . C 3 HOH A 16 516 37 HOH HOH . C 3 HOH A 17 517 103 HOH HOH . C 3 HOH A 18 518 53 HOH HOH . C 3 HOH A 19 519 99 HOH HOH . C 3 HOH A 20 520 7 HOH HOH . C 3 HOH A 21 521 79 HOH HOH . C 3 HOH A 22 522 69 HOH HOH . C 3 HOH A 23 523 95 HOH HOH . C 3 HOH A 24 524 40 HOH HOH . C 3 HOH A 25 525 94 HOH HOH . C 3 HOH A 26 526 90 HOH HOH . C 3 HOH A 27 527 57 HOH HOH . C 3 HOH A 28 528 4 HOH HOH . C 3 HOH A 29 529 17 HOH HOH . C 3 HOH A 30 530 11 HOH HOH . C 3 HOH A 31 531 46 HOH HOH . C 3 HOH A 32 532 98 HOH HOH . C 3 HOH A 33 533 28 HOH HOH . C 3 HOH A 34 534 96 HOH HOH . C 3 HOH A 35 535 97 HOH HOH . C 3 HOH A 36 536 63 HOH HOH . C 3 HOH A 37 537 35 HOH HOH . C 3 HOH A 38 538 2 HOH HOH . C 3 HOH A 39 539 1 HOH HOH . C 3 HOH A 40 540 71 HOH HOH . C 3 HOH A 41 541 29 HOH HOH . C 3 HOH A 42 542 24 HOH HOH . C 3 HOH A 43 543 64 HOH HOH . C 3 HOH A 44 544 76 HOH HOH . C 3 HOH A 45 545 10 HOH HOH . C 3 HOH A 46 546 78 HOH HOH . C 3 HOH A 47 547 32 HOH HOH . C 3 HOH A 48 548 113 HOH HOH . C 3 HOH A 49 549 30 HOH HOH . C 3 HOH A 50 550 62 HOH HOH . C 3 HOH A 51 551 73 HOH HOH . C 3 HOH A 52 552 14 HOH HOH . C 3 HOH A 53 553 72 HOH HOH . C 3 HOH A 54 554 45 HOH HOH . C 3 HOH A 55 555 50 HOH HOH . C 3 HOH A 56 556 5 HOH HOH . C 3 HOH A 57 557 39 HOH HOH . C 3 HOH A 58 558 77 HOH HOH . C 3 HOH A 59 559 13 HOH HOH . C 3 HOH A 60 560 93 HOH HOH . C 3 HOH A 61 561 105 HOH HOH . C 3 HOH A 62 562 36 HOH HOH . C 3 HOH A 63 563 101 HOH HOH . C 3 HOH A 64 564 52 HOH HOH . C 3 HOH A 65 565 84 HOH HOH . C 3 HOH A 66 566 47 HOH HOH . C 3 HOH A 67 567 54 HOH HOH . C 3 HOH A 68 568 88 HOH HOH . C 3 HOH A 69 569 86 HOH HOH . C 3 HOH A 70 570 60 HOH HOH . C 3 HOH A 71 571 106 HOH HOH . C 3 HOH A 72 572 49 HOH HOH . C 3 HOH A 73 573 12 HOH HOH . C 3 HOH A 74 574 91 HOH HOH . C 3 HOH A 75 575 92 HOH HOH . C 3 HOH A 76 576 85 HOH HOH . C 3 HOH A 77 577 43 HOH HOH . C 3 HOH A 78 578 70 HOH HOH . C 3 HOH A 79 579 51 HOH HOH . C 3 HOH A 80 580 9 HOH HOH . C 3 HOH A 81 581 80 HOH HOH . C 3 HOH A 82 582 59 HOH HOH . C 3 HOH A 83 583 102 HOH HOH . C 3 HOH A 84 584 26 HOH HOH . C 3 HOH A 85 585 81 HOH HOH . C 3 HOH A 86 586 112 HOH HOH . C 3 HOH A 87 587 87 HOH HOH . C 3 HOH A 88 588 6 HOH HOH . C 3 HOH A 89 589 110 HOH HOH . C 3 HOH A 90 590 27 HOH HOH . C 3 HOH A 91 591 83 HOH HOH . C 3 HOH A 92 592 109 HOH HOH . C 3 HOH A 93 593 107 HOH HOH . C 3 HOH A 94 594 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TBK . . . B 2 16.121 30.372 17.055 1 30.16 ? C1 TBK 401 A 1 HETATM 2 C C3 TBK . . . B 2 15.486 32.274 13.922 1 37.73 ? C3 TBK 401 A 1 HETATM 3 C C5 TBK . . . B 2 13.344 32.788 9.276 1 50 ? C5 TBK 401 A 1 HETATM 4 C C6 TBK . . . B 2 15.325 33.571 11.247 1 42.43 ? C6 TBK 401 A 1 HETATM 5 N N2 TBK . . . B 2 14.499 32.453 11.741 1 44.72 ? N2 TBK 401 A 1 HETATM 6 N N4 TBK . . . B 2 13.022 38.669 25.234 1 29.86 ? N4 TBK 401 A 1 HETATM 7 C C28 TBK . . . B 2 12.434 40.303 22.134 1 29.62 ? C28 TBK 401 A 1 HETATM 8 C C27 TBK . . . B 2 12.961 39.735 24.435 1 30.18 ? C27 TBK 401 A 1 HETATM 9 C C26 TBK . . . B 2 12.661 37.609 24.445 1 29.82 ? C26 TBK 401 A 1 HETATM 10 C C29 TBK . . . B 2 12.719 41.599 22.383 1 29.39 ? C29 TBK 401 A 1 HETATM 11 C C30 TBK . . . B 2 13.139 42 23.672 1 29.44 ? C30 TBK 401 A 1 HETATM 12 C C24 TBK . . . B 2 11.996 37.204 21.955 1 29.99 ? C24 TBK 401 A 1 HETATM 13 C C20 TBK . . . B 2 12.991 32.484 19.086 1 29.1 ? C20 TBK 401 A 1 HETATM 14 C C13 TBK . . . B 2 21.238 27.702 18.539 1 27.58 ? C13 TBK 401 A 1 HETATM 15 C C12 TBK . . . B 2 20.063 27.698 17.564 1 27.65 ? C12 TBK 401 A 1 HETATM 16 C C9 TBK . . . B 2 16.305 28.921 17.515 1 29.51 ? C9 TBK 401 A 1 HETATM 17 N N TBK . . . B 2 15.112 31.027 17.865 1 28.99 ? N TBK 401 A 1 HETATM 18 C C TBK . . . B 2 15.436 31.908 18.822 1 28.65 ? C TBK 401 A 1 HETATM 19 O O TBK . . . B 2 16.585 32.006 19.249 1 26.79 ? O TBK 401 A 1 HETATM 20 C C10 TBK . . . B 2 17.685 28.391 17.125 1 28.57 ? C10 TBK 401 A 1 HETATM 21 C C11 TBK . . . B 2 18.76 28.182 18.191 1 27.69 ? C11 TBK 401 A 1 HETATM 22 C C14 TBK . . . B 2 20.783 27.966 19.962 1 27.84 ? C14 TBK 401 A 1 HETATM 23 C C15 TBK . . . B 2 20.07 29.298 20.067 1 27.16 ? C15 TBK 401 A 1 HETATM 24 C C16 TBK . . . B 2 19.016 29.462 18.978 1 27.51 ? C16 TBK 401 A 1 HETATM 25 C C17 TBK . . . B 2 14.323 32.72 19.413 1 29.18 ? C17 TBK 401 A 1 HETATM 26 C C18 TBK . . . B 2 14.609 33.762 20.295 1 29.65 ? C18 TBK 401 A 1 HETATM 27 C C19 TBK . . . B 2 13.592 34.52 20.848 1 29.6 ? C19 TBK 401 A 1 HETATM 28 C C2 TBK . . . B 2 15.769 30.456 15.569 1 32.14 ? C2 TBK 401 A 1 HETATM 29 C C21 TBK . . . B 2 11.98 33.242 19.647 1 29.31 ? C21 TBK 401 A 1 HETATM 30 C C22 TBK . . . B 2 12.261 34.262 20.544 1 29.57 ? C22 TBK 401 A 1 HETATM 31 C C23 TBK . . . B 2 11.128 35.063 21.144 1 29.59 ? C23 TBK 401 A 1 HETATM 32 C C25 TBK . . . B 2 12.372 37.986 23.162 1 29.91 ? C25 TBK 401 A 1 HETATM 33 C C31 TBK . . . B 2 13.256 41.097 24.68 1 29.02 ? C31 TBK 401 A 1 HETATM 34 C C4 TBK . . . B 2 15.252 31.537 12.616 1 41.73 ? C4 TBK 401 A 1 HETATM 35 C C7 TBK . . . B 2 16.512 33.804 12.176 1 41.24 ? C7 TBK 401 A 1 HETATM 36 C C8 TBK . . . B 2 16.122 33.638 13.65 1 39.49 ? C8 TBK 401 A 1 HETATM 37 N N1 TBK . . . B 2 16.258 31.502 14.893 1 34.58 ? N1 TBK 401 A 1 HETATM 38 N N3 TBK . . . B 2 11.505 35.987 22.203 1 29.32 ? N3 TBK 401 A 1 HETATM 39 N N5 TBK . . . B 2 12.559 39.371 23.149 1 30.01 ? N5 TBK 401 A 1 HETATM 40 O O1 TBK . . . B 2 12.083 32.103 11.426 1 48.38 ? O1 TBK 401 A 1 HETATM 41 O O2 TBK . . . B 2 13.685 30.515 10.453 1 48.36 ? O2 TBK 401 A 1 HETATM 42 O O3 TBK . . . B 2 15.097 29.575 15.043 1 33.69 ? O3 TBK 401 A 1 HETATM 43 O O4 TBK . . . B 2 12.172 37.642 20.813 1 30.08 ? O4 TBK 401 A 1 HETATM 44 S S TBK . . . B 2 13.326 31.862 10.766 1 50.75 ? S TBK 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #