data_7BDW # _model_server_result.job_id c5ke_J0umyMMNPztqrcEMA _model_server_result.datetime_utc '2024-10-11 01:23:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7BDW # _exptl.entry_id 7BDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.351 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BDW _cell.length_a 50.84 _cell.length_b 63.037 _cell.length_c 108.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 90 A HIS 90 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A ND1 HIS 90 A HIS 90 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A OD1 ASP 111 A ASP 111 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 C O2A COA . A COA 301 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc5 C O1A COA . A COA 301 1_555 F MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 F MN MN . A MN 304 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C14 H22 N4 O' _chem_comp.formula_weight 262.351 _chem_comp.id FD7 _chem_comp.mon_nstd_flag . _chem_comp.name "N-(2,6-diethylphenyl)-N'-(N-ethylcarbamimidoyl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 FD7 sing 169 n n C02 C03 FD7 sing 170 n n N11 C10 FD7 sing 171 n n N11 C12 FD7 sing 172 n n C03 C10 FD7 doub 173 n y C03 C04 FD7 sing 174 n y C17 C16 FD7 sing 175 n n C10 C07 FD7 sing 176 n y C04 C05 FD7 doub 177 n y N13 C12 FD7 sing 178 n n N13 C14 FD7 sing 179 n n N15 C16 FD7 sing 180 n n N15 C14 FD7 sing 181 n n C07 C08 FD7 sing 182 n n C07 C06 FD7 doub 183 n y C12 O19 FD7 doub 184 n n C05 C06 FD7 sing 185 n y C08 C09 FD7 sing 186 n n C14 N18 FD7 doub 187 n n C16 H1 FD7 sing 188 n n C16 H2 FD7 sing 189 n n C17 H3 FD7 sing 190 n n C17 H4 FD7 sing 191 n n C17 H5 FD7 sing 192 n n C01 H6 FD7 sing 193 n n C01 H7 FD7 sing 194 n n C01 H8 FD7 sing 195 n n C02 H9 FD7 sing 196 n n C02 H10 FD7 sing 197 n n C04 H11 FD7 sing 198 n n C05 H12 FD7 sing 199 n n C06 H13 FD7 sing 200 n n C08 H14 FD7 sing 201 n n C08 H15 FD7 sing 202 n n C09 H16 FD7 sing 203 n n C09 H17 FD7 sing 204 n n C09 H18 FD7 sing 205 n n N11 H19 FD7 sing 206 n n N13 H20 FD7 sing 207 n n N15 H21 FD7 sing 208 n n N18 H22 FD7 sing 209 n n # _atom_sites.entry_id 7BDW _atom_sites.fract_transf_matrix[1][1] 0.01967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 COA A 1 301 301 COA COA . D 4 FD7 A 1 302 302 FD7 FD7 . E 5 MN A 1 303 303 MN MN . F 5 MN A 1 304 304 MN MN . G 6 HOH A 1 401 4 HOH HOH . G 6 HOH A 2 402 1 HOH HOH . G 6 HOH A 3 403 6 HOH HOH . G 6 HOH A 4 404 3 HOH HOH . G 6 HOH A 5 405 7 HOH HOH . G 6 HOH A 6 406 2 HOH HOH . G 6 HOH A 7 407 8 HOH HOH . G 6 HOH A 8 408 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FD7 . . . D 4 -5.487 9.116 -11.663 1 83.05 ? C10 FD7 302 A 1 HETATM 2 C C12 FD7 . . . D 4 -7.811 8.088 -11.733 1 79.79 ? C12 FD7 302 A 1 HETATM 3 C C14 FD7 . . . D 4 -10.142 7.042 -11.965 1 70.89 ? C14 FD7 302 A 1 HETATM 4 C C16 FD7 . . . D 4 -12.416 6.02 -12.26 1 64.88 ? C16 FD7 302 A 1 HETATM 5 C C17 FD7 . . . D 4 -13.622 6.569 -13.018 1 66.91 ? C17 FD7 302 A 1 HETATM 6 C C01 FD7 . . . D 4 -6.488 12.584 -12.037 1 70.51 ? C01 FD7 302 A 1 HETATM 7 C C02 FD7 . . . D 4 -6.06 11.315 -12.771 1 77.47 ? C02 FD7 302 A 1 HETATM 8 C C03 FD7 . . . D 4 -5.201 10.463 -11.84 1 78.04 ? C03 FD7 302 A 1 HETATM 9 C C04 FD7 . . . D 4 -4.139 11.047 -11.171 1 70.83 ? C04 FD7 302 A 1 HETATM 10 C C05 FD7 . . . D 4 -3.354 10.287 -10.324 1 73.51 ? C05 FD7 302 A 1 HETATM 11 C C06 FD7 . . . D 4 -3.636 8.944 -10.148 1 80.23 ? C06 FD7 302 A 1 HETATM 12 C C07 FD7 . . . D 4 -4.695 8.351 -10.813 1 80.95 ? C07 FD7 302 A 1 HETATM 13 C C08 FD7 . . . D 4 -4.965 6.864 -10.586 1 76.2 ? C08 FD7 302 A 1 HETATM 14 C C09 FD7 . . . D 4 -4.056 6.017 -11.471 1 76.92 ? C09 FD7 302 A 1 HETATM 15 N N11 FD7 . . . D 4 -6.614 8.569 -12.401 1 85.36 ? N11 FD7 302 A 1 HETATM 16 N N13 FD7 . . . D 4 -8.904 7.553 -12.535 1 72.53 ? N13 FD7 302 A 1 HETATM 17 N N15 FD7 . . . D 4 -11.185 6.53 -12.837 1 67.31 ? N15 FD7 302 A 1 HETATM 18 N N18 FD7 . . . D 4 -10.33 7.037 -10.729 1 75.79 ? N18 FD7 302 A 1 HETATM 19 O O19 FD7 . . . D 4 -7.869 8.135 -10.55 1 77.54 ? O19 FD7 302 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #