data_7BDZ # _model_server_result.job_id xisa_SEzQ7wfuZTnux-xoQ _model_server_result.datetime_utc '2024-11-15 20:33:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":217}' # _entry.id 7BDZ # _exptl.entry_id 7BDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BDZ _cell.length_a 77.964 _cell.length_b 77.964 _cell.length_c 37.291 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 R N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A NZ LYS 13 AAA LYS 13 1_555 U RH1 RH . AAA RH 220 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NH2 ARG 14 AAA ARG 14 1_555 T RH1 RH . AAA RH 219 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 A NE2 HIS 15 AAA HIS 15 1_555 T RH1 RH . AAA RH 219 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 A OD2 ASP 18 AAA ASP 18 1_555 V RH1 RH . AAA RH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 A OD2 ASP 18 AAA ASP 18 1_555 W RH1 RH . AAA RH 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 A O LEU 129 AAA LEU 129 1_555 U RH1 RH . AAA RH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 A OXT LEU 129 AAA LEU 129 1_555 U RH1 RH . AAA RH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc8 A OXT LEU 129 AAA LEU 129 1_555 U RH1 RH . AAA RH 220 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc9 N O ACT . AAA ACT 213 1_555 U RH1 RH . AAA RH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc10 N OXT ACT . AAA ACT 213 1_555 U RH1 RH . AAA RH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc11 N OXT ACT . AAA ACT 213 1_555 U RH1 RH . AAA RH 220 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc12 Q O ACT . AAA ACT 216 1_555 T RH1 RH . AAA RH 219 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.113 ? metalc ? metalc13 T RH1 RH . AAA RH 219 1_555 X O HOH . AAA HOH 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc14 U RH1 RH . AAA RH 220 1_555 X O HOH . AAA HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 7BDZ _atom_sites.fract_transf_matrix[1][1] 0.012826 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 AAA 1 201 2 NO3 NO3 . C 2 NO3 AAA 1 202 4 NO3 NO3 . D 2 NO3 AAA 1 203 5 NO3 NO3 . E 2 NO3 AAA 1 204 7 NO3 NO3 . F 2 NO3 AAA 1 205 8 NO3 NO3 . G 2 NO3 AAA 1 206 10 NO3 NO3 . H 2 NO3 AAA 1 207 11 NO3 NO3 . I 2 NO3 AAA 1 208 12 NO3 NO3 . J 2 NO3 AAA 1 209 13 NO3 NO3 . K 3 ACT AAA 1 210 3 ACT ACT . L 3 ACT AAA 1 211 5 ACT ACT . M 3 ACT AAA 1 212 6 ACT ACT . N 3 ACT AAA 1 213 7 ACT ACT . O 3 ACT AAA 1 214 8 ACT ACT . P 3 ACT AAA 1 215 9 ACT ACT . Q 3 ACT AAA 1 216 10 ACT ACT . R 4 EDO AAA 1 217 1 EDO EDO . S 4 EDO AAA 1 218 2 EDO EDO . T 5 RH AAA 1 219 1 RH RH . U 5 RH AAA 1 220 2 RH RH . V 5 RH AAA 1 221 3 RH RH . W 5 RH AAA 1 222 4 RH RH . X 6 HOH AAA 1 301 198 HOH HOH . X 6 HOH AAA 2 302 103 HOH HOH . X 6 HOH AAA 3 303 195 HOH HOH . X 6 HOH AAA 4 304 10 HOH HOH . X 6 HOH AAA 5 305 151 HOH HOH . X 6 HOH AAA 6 306 140 HOH HOH . X 6 HOH AAA 7 307 122 HOH HOH . X 6 HOH AAA 8 308 58 HOH HOH . X 6 HOH AAA 9 309 90 HOH HOH . X 6 HOH AAA 10 310 167 HOH HOH . X 6 HOH AAA 11 311 116 HOH HOH . X 6 HOH AAA 12 312 57 HOH HOH . X 6 HOH AAA 13 313 114 HOH HOH . X 6 HOH AAA 14 314 18 HOH HOH . X 6 HOH AAA 15 315 105 HOH HOH . X 6 HOH AAA 16 316 72 HOH HOH . X 6 HOH AAA 17 317 16 HOH HOH . X 6 HOH AAA 18 318 11 HOH HOH . X 6 HOH AAA 19 319 123 HOH HOH . X 6 HOH AAA 20 320 170 HOH HOH . X 6 HOH AAA 21 321 127 HOH HOH . X 6 HOH AAA 22 322 79 HOH HOH . X 6 HOH AAA 23 323 155 HOH HOH . X 6 HOH AAA 24 324 6 HOH HOH . X 6 HOH AAA 25 325 23 HOH HOH . X 6 HOH AAA 26 326 176 HOH HOH . X 6 HOH AAA 27 327 29 HOH HOH . X 6 HOH AAA 28 328 143 HOH HOH . X 6 HOH AAA 29 329 80 HOH HOH . X 6 HOH AAA 30 330 145 HOH HOH . X 6 HOH AAA 31 331 47 HOH HOH . X 6 HOH AAA 32 332 135 HOH HOH . X 6 HOH AAA 33 333 150 HOH HOH . X 6 HOH AAA 34 334 37 HOH HOH . X 6 HOH AAA 35 335 141 HOH HOH . X 6 HOH AAA 36 336 173 HOH HOH . X 6 HOH AAA 37 337 194 HOH HOH . X 6 HOH AAA 38 338 117 HOH HOH . X 6 HOH AAA 39 339 49 HOH HOH . X 6 HOH AAA 40 340 126 HOH HOH . X 6 HOH AAA 41 341 134 HOH HOH . X 6 HOH AAA 42 342 139 HOH HOH . X 6 HOH AAA 43 343 65 HOH HOH . X 6 HOH AAA 44 344 119 HOH HOH . X 6 HOH AAA 45 345 92 HOH HOH . X 6 HOH AAA 46 346 13 HOH HOH . X 6 HOH AAA 47 347 83 HOH HOH . X 6 HOH AAA 48 348 21 HOH HOH . X 6 HOH AAA 49 349 91 HOH HOH . X 6 HOH AAA 50 350 125 HOH HOH . X 6 HOH AAA 51 351 148 HOH HOH . X 6 HOH AAA 52 352 2 HOH HOH . X 6 HOH AAA 53 353 133 HOH HOH . X 6 HOH AAA 54 354 39 HOH HOH . X 6 HOH AAA 55 355 138 HOH HOH . X 6 HOH AAA 56 356 4 HOH HOH . X 6 HOH AAA 57 357 149 HOH HOH . X 6 HOH AAA 58 358 33 HOH HOH . X 6 HOH AAA 59 359 51 HOH HOH . X 6 HOH AAA 60 360 62 HOH HOH . X 6 HOH AAA 61 361 130 HOH HOH . X 6 HOH AAA 62 362 180 HOH HOH . X 6 HOH AAA 63 363 129 HOH HOH . X 6 HOH AAA 64 364 54 HOH HOH . X 6 HOH AAA 65 365 162 HOH HOH . X 6 HOH AAA 66 366 24 HOH HOH . X 6 HOH AAA 67 367 77 HOH HOH . X 6 HOH AAA 68 368 190 HOH HOH . X 6 HOH AAA 69 369 169 HOH HOH . X 6 HOH AAA 70 370 20 HOH HOH . X 6 HOH AAA 71 371 184 HOH HOH . X 6 HOH AAA 72 372 101 HOH HOH . X 6 HOH AAA 73 373 197 HOH HOH . X 6 HOH AAA 74 374 185 HOH HOH . X 6 HOH AAA 75 375 172 HOH HOH . X 6 HOH AAA 76 376 50 HOH HOH . X 6 HOH AAA 77 377 84 HOH HOH . X 6 HOH AAA 78 378 27 HOH HOH . X 6 HOH AAA 79 379 179 HOH HOH . X 6 HOH AAA 80 380 110 HOH HOH . X 6 HOH AAA 81 381 28 HOH HOH . X 6 HOH AAA 82 382 111 HOH HOH . X 6 HOH AAA 83 383 174 HOH HOH . X 6 HOH AAA 84 384 193 HOH HOH . X 6 HOH AAA 85 385 186 HOH HOH . X 6 HOH AAA 86 386 161 HOH HOH . X 6 HOH AAA 87 387 15 HOH HOH . X 6 HOH AAA 88 388 163 HOH HOH . X 6 HOH AAA 89 389 146 HOH HOH . X 6 HOH AAA 90 390 82 HOH HOH . X 6 HOH AAA 91 391 55 HOH HOH . X 6 HOH AAA 92 392 159 HOH HOH . X 6 HOH AAA 93 393 43 HOH HOH . X 6 HOH AAA 94 394 147 HOH HOH . X 6 HOH AAA 95 395 53 HOH HOH . X 6 HOH AAA 96 396 115 HOH HOH . X 6 HOH AAA 97 397 35 HOH HOH . X 6 HOH AAA 98 398 73 HOH HOH . X 6 HOH AAA 99 399 131 HOH HOH . X 6 HOH AAA 100 400 136 HOH HOH . X 6 HOH AAA 101 401 102 HOH HOH . X 6 HOH AAA 102 402 191 HOH HOH . X 6 HOH AAA 103 403 187 HOH HOH . X 6 HOH AAA 104 404 78 HOH HOH . X 6 HOH AAA 105 405 177 HOH HOH . X 6 HOH AAA 106 406 112 HOH HOH . X 6 HOH AAA 107 407 118 HOH HOH . X 6 HOH AAA 108 408 98 HOH HOH . X 6 HOH AAA 109 409 182 HOH HOH . X 6 HOH AAA 110 410 26 HOH HOH . X 6 HOH AAA 111 411 152 HOH HOH . X 6 HOH AAA 112 412 160 HOH HOH . X 6 HOH AAA 113 413 14 HOH HOH . X 6 HOH AAA 114 414 196 HOH HOH . X 6 HOH AAA 115 415 76 HOH HOH . X 6 HOH AAA 116 416 189 HOH HOH . X 6 HOH AAA 117 417 175 HOH HOH . X 6 HOH AAA 118 418 158 HOH HOH . X 6 HOH AAA 119 419 154 HOH HOH . X 6 HOH AAA 120 420 74 HOH HOH . X 6 HOH AAA 121 421 109 HOH HOH . X 6 HOH AAA 122 422 66 HOH HOH . X 6 HOH AAA 123 423 192 HOH HOH . X 6 HOH AAA 124 424 42 HOH HOH . X 6 HOH AAA 125 425 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 4 -29.537 -16.506 -3.663 1 23.58 ? C1 EDO 217 AAA 1 HETATM 2 O O1 EDO . . . R 4 -30.655 -16.728 -2.844 1 22.25 ? O1 EDO 217 AAA 1 HETATM 3 C C2 EDO . . . R 4 -28.392 -16.021 -2.894 1 23.2 ? C2 EDO 217 AAA 1 HETATM 4 O O2 EDO . . . R 4 -28.728 -14.857 -2.182 1 24.27 ? O2 EDO 217 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 502 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #