data_7BE1 # _model_server_result.job_id N1owVoUGyTHH83kzFD-89g _model_server_result.datetime_utc '2024-11-15 17:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7be1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":214}' # _entry.id 7BE1 # _exptl.entry_id 7BE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.906 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Rhodium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BE1 _cell.length_a 78.36 _cell.length_b 78.36 _cell.length_c 37.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NZ LYS 13 AAA LYS 13 1_555 K RH1 RH . AAA RH 210 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A NH1 ARG 14 AAA ARG 14 1_555 O RH1 RH . AAA RH 214 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 A NE2 HIS 15 AAA HIS 15 1_555 O RH1 RH . AAA RH 214 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.35 ? metalc ? metalc4 A OE1 GLU 35 AAA GLU 35 1_555 Z NA NA . AAA NA 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc5 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc7 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc8 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc9 A O LEU 129 AAA LEU 129 1_555 K RH1 RH . AAA RH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc10 A OXT LEU 129 AAA LEU 129 1_555 K RH1 RH . AAA RH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc11 B NA NA . AAA NA 201 1_555 C O1 NO3 . AAA NO3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc12 B NA NA . AAA NA 201 1_555 AA O HOH . AAA HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 K RH1 RH . AAA RH 210 1_555 T O ACT . AAA ACT 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc14 K RH1 RH . AAA RH 210 1_555 T OXT ACT . AAA ACT 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc15 K RH1 RH . AAA RH 210 1_555 T OXT ACT . AAA ACT 219 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc16 L O1 EDO . AAA EDO 211 1_555 Z NA NA . AAA NA 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc17 L O2 EDO . AAA EDO 211 1_555 Z NA NA . AAA NA 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc18 O RH1 RH . AAA RH 214 1_555 P O ACT . AAA ACT 215 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc19 O RH1 RH . AAA RH 214 1_555 AA O HOH . AAA HOH 340 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.666 ? metalc ? metalc20 Z NA NA . AAA NA 225 1_555 AA O HOH . AAA HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 Z NA NA . AAA NA 225 1_555 AA O HOH . AAA HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc22 Z NA NA . AAA NA 225 1_555 AA O HOH . AAA HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc23 Z NA NA . AAA NA 225 1_555 AA O HOH . AAA HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Rh 1' _chem_comp.formula_weight 102.906 _chem_comp.id RH _chem_comp.mon_nstd_flag . _chem_comp.name Rhodium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BE1 _atom_sites.fract_transf_matrix[1][1] 0.012762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 NO3 AAA 1 202 401 NO3 NO3 . D 3 NO3 AAA 1 203 501 NO3 NO3 . E 3 NO3 AAA 1 204 601 NO3 NO3 . F 3 NO3 AAA 1 205 701 NO3 NO3 . G 3 NO3 AAA 1 206 801 NO3 NO3 . H 3 NO3 AAA 1 207 1001 NO3 NO3 . I 3 NO3 AAA 1 208 1101 NO3 NO3 . J 3 NO3 AAA 1 209 1301 NO3 NO3 . K 4 RH AAA 1 210 1601 RH RH . L 5 EDO AAA 1 211 1701 EDO EDO . M 5 EDO AAA 1 212 1801 EDO EDO . N 5 EDO AAA 1 213 1901 EDO EDO . O 4 RH AAA 1 214 2001 RH RH . P 6 ACT AAA 1 215 2101 ACT ACT . Q 6 ACT AAA 1 216 2201 ACT ACT . R 6 ACT AAA 1 217 2401 ACT ACT . S 6 ACT AAA 1 218 2501 ACT ACT . T 6 ACT AAA 1 219 2601 ACT ACT . U 6 ACT AAA 1 220 2701 ACT ACT . V 3 NO3 AAA 1 221 2801 NO3 NO3 . W 3 NO3 AAA 1 222 2901 NO3 NO3 . X 3 NO3 AAA 1 223 3101 NO3 NO3 . Y 6 ACT AAA 1 224 3201 ACT ACT . Z 2 NA AAA 1 225 1 NA NA . AA 7 HOH AAA 1 301 76 HOH HOH . AA 7 HOH AAA 2 302 9 HOH HOH . AA 7 HOH AAA 3 303 14 HOH HOH . AA 7 HOH AAA 4 304 72 HOH HOH . AA 7 HOH AAA 5 305 93 HOH HOH . AA 7 HOH AAA 6 306 85 HOH HOH . AA 7 HOH AAA 7 307 4 HOH HOH . AA 7 HOH AAA 8 308 9 HOH HOH . AA 7 HOH AAA 9 309 53 HOH HOH . AA 7 HOH AAA 10 310 4 HOH HOH . AA 7 HOH AAA 11 311 49 HOH HOH . AA 7 HOH AAA 12 312 29 HOH HOH . AA 7 HOH AAA 13 313 62 HOH HOH . AA 7 HOH AAA 14 314 37 HOH HOH . AA 7 HOH AAA 15 315 56 HOH HOH . AA 7 HOH AAA 16 316 8 HOH HOH . AA 7 HOH AAA 17 317 17 HOH HOH . AA 7 HOH AAA 18 318 15 HOH HOH . AA 7 HOH AAA 19 319 30 HOH HOH . AA 7 HOH AAA 20 320 90 HOH HOH . AA 7 HOH AAA 21 321 34 HOH HOH . AA 7 HOH AAA 22 322 58 HOH HOH . AA 7 HOH AAA 23 323 57 HOH HOH . AA 7 HOH AAA 24 324 13 HOH HOH . AA 7 HOH AAA 25 325 27 HOH HOH . AA 7 HOH AAA 26 326 5 HOH HOH . AA 7 HOH AAA 27 327 58 HOH HOH . AA 7 HOH AAA 28 328 27 HOH HOH . AA 7 HOH AAA 29 329 71 HOH HOH . AA 7 HOH AAA 30 330 95 HOH HOH . AA 7 HOH AAA 31 331 2 HOH HOH . AA 7 HOH AAA 32 332 41 HOH HOH . AA 7 HOH AAA 33 333 7 HOH HOH . AA 7 HOH AAA 34 334 69 HOH HOH . AA 7 HOH AAA 35 335 10 HOH HOH . AA 7 HOH AAA 36 336 23 HOH HOH . AA 7 HOH AAA 37 337 32 HOH HOH . AA 7 HOH AAA 38 338 11 HOH HOH . AA 7 HOH AAA 39 339 18 HOH HOH . AA 7 HOH AAA 40 340 39 HOH HOH . AA 7 HOH AAA 41 341 78 HOH HOH . AA 7 HOH AAA 42 342 55 HOH HOH . AA 7 HOH AAA 43 343 75 HOH HOH . AA 7 HOH AAA 44 344 56 HOH HOH . AA 7 HOH AAA 45 345 54 HOH HOH . AA 7 HOH AAA 46 346 62 HOH HOH . AA 7 HOH AAA 47 347 74 HOH HOH . AA 7 HOH AAA 48 348 12 HOH HOH . AA 7 HOH AAA 49 349 41 HOH HOH . AA 7 HOH AAA 50 350 21 HOH HOH . AA 7 HOH AAA 51 351 19 HOH HOH . AA 7 HOH AAA 52 352 82 HOH HOH . AA 7 HOH AAA 53 353 31 HOH HOH . AA 7 HOH AAA 54 354 43 HOH HOH . AA 7 HOH AAA 55 355 3 HOH HOH . AA 7 HOH AAA 56 356 61 HOH HOH . AA 7 HOH AAA 57 357 1 HOH HOH . AA 7 HOH AAA 58 358 43 HOH HOH . AA 7 HOH AAA 59 359 91 HOH HOH . AA 7 HOH AAA 60 360 50 HOH HOH . AA 7 HOH AAA 61 361 28 HOH HOH . AA 7 HOH AAA 62 362 16 HOH HOH . AA 7 HOH AAA 63 363 66 HOH HOH . AA 7 HOH AAA 64 364 10 HOH HOH . AA 7 HOH AAA 65 365 37 HOH HOH . AA 7 HOH AAA 66 366 96 HOH HOH . AA 7 HOH AAA 67 367 6 HOH HOH . AA 7 HOH AAA 68 368 36 HOH HOH . AA 7 HOH AAA 69 369 26 HOH HOH . AA 7 HOH AAA 70 370 34 HOH HOH . AA 7 HOH AAA 71 371 45 HOH HOH . AA 7 HOH AAA 72 372 49 HOH HOH . AA 7 HOH AAA 73 373 31 HOH HOH . AA 7 HOH AAA 74 374 68 HOH HOH . AA 7 HOH AAA 75 375 60 HOH HOH . AA 7 HOH AAA 76 376 24 HOH HOH . AA 7 HOH AAA 77 377 18 HOH HOH . AA 7 HOH AAA 78 378 48 HOH HOH . AA 7 HOH AAA 79 379 3 HOH HOH . AA 7 HOH AAA 80 380 11 HOH HOH . AA 7 HOH AAA 81 381 59 HOH HOH . AA 7 HOH AAA 82 382 51 HOH HOH . AA 7 HOH AAA 83 383 88 HOH HOH . AA 7 HOH AAA 84 384 79 HOH HOH . AA 7 HOH AAA 85 385 22 HOH HOH . AA 7 HOH AAA 86 386 25 HOH HOH . AA 7 HOH AAA 87 387 89 HOH HOH . AA 7 HOH AAA 88 388 97 HOH HOH . AA 7 HOH AAA 89 389 83 HOH HOH . AA 7 HOH AAA 90 390 61 HOH HOH . AA 7 HOH AAA 91 391 52 HOH HOH . AA 7 HOH AAA 92 392 36 HOH HOH . AA 7 HOH AAA 93 393 87 HOH HOH . AA 7 HOH AAA 94 394 59 HOH HOH . AA 7 HOH AAA 95 395 70 HOH HOH . AA 7 HOH AAA 96 396 80 HOH HOH . AA 7 HOH AAA 97 397 29 HOH HOH . AA 7 HOH AAA 98 398 35 HOH HOH . AA 7 HOH AAA 99 399 21 HOH HOH . AA 7 HOH AAA 100 400 60 HOH HOH . AA 7 HOH AAA 101 401 50 HOH HOH . AA 7 HOH AAA 102 402 35 HOH HOH . AA 7 HOH AAA 103 403 65 HOH HOH . AA 7 HOH AAA 104 404 20 HOH HOH . AA 7 HOH AAA 105 405 86 HOH HOH . AA 7 HOH AAA 106 406 84 HOH HOH . AA 7 HOH AAA 107 407 55 HOH HOH . AA 7 HOH AAA 108 408 2 HOH HOH . AA 7 HOH AAA 109 409 63 HOH HOH . AA 7 HOH AAA 110 410 7 HOH HOH . AA 7 HOH AAA 111 411 44 HOH HOH . AA 7 HOH AAA 112 412 13 HOH HOH . AA 7 HOH AAA 113 413 54 HOH HOH . AA 7 HOH AAA 114 414 30 HOH HOH . AA 7 HOH AAA 115 415 12 HOH HOH . AA 7 HOH AAA 116 416 33 HOH HOH . AA 7 HOH AAA 117 417 57 HOH HOH . AA 7 HOH AAA 118 418 94 HOH HOH . AA 7 HOH AAA 119 419 52 HOH HOH . AA 7 HOH AAA 120 420 38 HOH HOH . AA 7 HOH AAA 121 421 46 HOH HOH . AA 7 HOH AAA 122 422 92 HOH HOH . AA 7 HOH AAA 123 423 25 HOH HOH . AA 7 HOH AAA 124 424 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RH _atom_site.label_atom_id RH1 _atom_site.label_comp_id RH _atom_site.label_seq_id . _atom_site.label_alt_id A _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x -10.034 _atom_site.Cartn_y 9.306 _atom_site.Cartn_z 15.28 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 26.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RH1 _atom_site.auth_comp_id RH _atom_site.auth_seq_id 214 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #