data_7BE3 # _model_server_result.job_id zd7t4B_iq7FUBLZOzS8RxA _model_server_result.datetime_utc '2025-02-05 04:53:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7be3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7BE3 # _exptl.entry_id 7BE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BE3 _cell.length_a 36.039 _cell.length_b 58.048 _cell.length_c 62.286 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NGA _pdbx_entity_branch_link.comp_id_2 NDG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NDG 1 C 1 NDG A 301 LDA 2 n B NGA 2 C 2 NGA A 301 LDA # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O4 _struct_conn.ptnr1_label_comp_id NDG _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id NDG _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NGA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id NGA _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.388 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7BE3 _atom_sites.fract_transf_matrix[1][1] 0.027748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 401 GOL GOL . D 4 CL A 1 402 1 CL CL . E 5 HOH A 1 501 182 HOH HOH . E 5 HOH A 2 502 111 HOH HOH . E 5 HOH A 3 503 146 HOH HOH . E 5 HOH A 4 504 64 HOH HOH . E 5 HOH A 5 505 110 HOH HOH . E 5 HOH A 6 506 44 HOH HOH . E 5 HOH A 7 507 85 HOH HOH . E 5 HOH A 8 508 23 HOH HOH . E 5 HOH A 9 509 133 HOH HOH . E 5 HOH A 10 510 215 HOH HOH . E 5 HOH A 11 511 216 HOH HOH . E 5 HOH A 12 512 170 HOH HOH . E 5 HOH A 13 513 151 HOH HOH . E 5 HOH A 14 514 31 HOH HOH . E 5 HOH A 15 515 195 HOH HOH . E 5 HOH A 16 516 38 HOH HOH . E 5 HOH A 17 517 77 HOH HOH . E 5 HOH A 18 518 164 HOH HOH . E 5 HOH A 19 519 7 HOH HOH . E 5 HOH A 20 520 67 HOH HOH . E 5 HOH A 21 521 62 HOH HOH . E 5 HOH A 22 522 57 HOH HOH . E 5 HOH A 23 523 45 HOH HOH . E 5 HOH A 24 524 93 HOH HOH . E 5 HOH A 25 525 150 HOH HOH . E 5 HOH A 26 526 113 HOH HOH . E 5 HOH A 27 527 119 HOH HOH . E 5 HOH A 28 528 20 HOH HOH . E 5 HOH A 29 529 9 HOH HOH . E 5 HOH A 30 530 86 HOH HOH . E 5 HOH A 31 531 78 HOH HOH . E 5 HOH A 32 532 25 HOH HOH . E 5 HOH A 33 533 120 HOH HOH . E 5 HOH A 34 534 100 HOH HOH . E 5 HOH A 35 535 24 HOH HOH . E 5 HOH A 36 536 147 HOH HOH . E 5 HOH A 37 537 106 HOH HOH . E 5 HOH A 38 538 180 HOH HOH . E 5 HOH A 39 539 27 HOH HOH . E 5 HOH A 40 540 46 HOH HOH . E 5 HOH A 41 541 205 HOH HOH . E 5 HOH A 42 542 35 HOH HOH . E 5 HOH A 43 543 173 HOH HOH . E 5 HOH A 44 544 55 HOH HOH . E 5 HOH A 45 545 101 HOH HOH . E 5 HOH A 46 546 50 HOH HOH . E 5 HOH A 47 547 12 HOH HOH . E 5 HOH A 48 548 171 HOH HOH . E 5 HOH A 49 549 198 HOH HOH . E 5 HOH A 50 550 135 HOH HOH . E 5 HOH A 51 551 3 HOH HOH . E 5 HOH A 52 552 21 HOH HOH . E 5 HOH A 53 553 79 HOH HOH . E 5 HOH A 54 554 96 HOH HOH . E 5 HOH A 55 555 33 HOH HOH . E 5 HOH A 56 556 141 HOH HOH . E 5 HOH A 57 557 162 HOH HOH . E 5 HOH A 58 558 63 HOH HOH . E 5 HOH A 59 559 174 HOH HOH . E 5 HOH A 60 560 26 HOH HOH . E 5 HOH A 61 561 59 HOH HOH . E 5 HOH A 62 562 29 HOH HOH . E 5 HOH A 63 563 87 HOH HOH . E 5 HOH A 64 564 97 HOH HOH . E 5 HOH A 65 565 94 HOH HOH . E 5 HOH A 66 566 129 HOH HOH . E 5 HOH A 67 567 123 HOH HOH . E 5 HOH A 68 568 128 HOH HOH . E 5 HOH A 69 569 199 HOH HOH . E 5 HOH A 70 570 10 HOH HOH . E 5 HOH A 71 571 43 HOH HOH . E 5 HOH A 72 572 209 HOH HOH . E 5 HOH A 73 573 68 HOH HOH . E 5 HOH A 74 574 41 HOH HOH . E 5 HOH A 75 575 183 HOH HOH . E 5 HOH A 76 576 39 HOH HOH . E 5 HOH A 77 577 157 HOH HOH . E 5 HOH A 78 578 202 HOH HOH . E 5 HOH A 79 579 15 HOH HOH . E 5 HOH A 80 580 42 HOH HOH . E 5 HOH A 81 581 2 HOH HOH . E 5 HOH A 82 582 14 HOH HOH . E 5 HOH A 83 583 187 HOH HOH . E 5 HOH A 84 584 154 HOH HOH . E 5 HOH A 85 585 127 HOH HOH . E 5 HOH A 86 586 117 HOH HOH . E 5 HOH A 87 587 167 HOH HOH . E 5 HOH A 88 588 58 HOH HOH . E 5 HOH A 89 589 179 HOH HOH . E 5 HOH A 90 590 126 HOH HOH . E 5 HOH A 91 591 188 HOH HOH . E 5 HOH A 92 592 99 HOH HOH . E 5 HOH A 93 593 40 HOH HOH . E 5 HOH A 94 594 89 HOH HOH . E 5 HOH A 95 595 34 HOH HOH . E 5 HOH A 96 596 142 HOH HOH . E 5 HOH A 97 597 115 HOH HOH . E 5 HOH A 98 598 90 HOH HOH . E 5 HOH A 99 599 118 HOH HOH . E 5 HOH A 100 600 54 HOH HOH . E 5 HOH A 101 601 4 HOH HOH . E 5 HOH A 102 602 56 HOH HOH . E 5 HOH A 103 603 186 HOH HOH . E 5 HOH A 104 604 83 HOH HOH . E 5 HOH A 105 605 136 HOH HOH . E 5 HOH A 106 606 161 HOH HOH . E 5 HOH A 107 607 17 HOH HOH . E 5 HOH A 108 608 134 HOH HOH . E 5 HOH A 109 609 16 HOH HOH . E 5 HOH A 110 610 121 HOH HOH . E 5 HOH A 111 611 30 HOH HOH . E 5 HOH A 112 612 81 HOH HOH . E 5 HOH A 113 613 109 HOH HOH . E 5 HOH A 114 614 72 HOH HOH . E 5 HOH A 115 615 60 HOH HOH . E 5 HOH A 116 616 76 HOH HOH . E 5 HOH A 117 617 71 HOH HOH . E 5 HOH A 118 618 6 HOH HOH . E 5 HOH A 119 619 73 HOH HOH . E 5 HOH A 120 620 194 HOH HOH . E 5 HOH A 121 621 13 HOH HOH . E 5 HOH A 122 622 122 HOH HOH . E 5 HOH A 123 623 114 HOH HOH . E 5 HOH A 124 624 22 HOH HOH . E 5 HOH A 125 625 200 HOH HOH . E 5 HOH A 126 626 217 HOH HOH . E 5 HOH A 127 627 165 HOH HOH . E 5 HOH A 128 628 75 HOH HOH . E 5 HOH A 129 629 103 HOH HOH . E 5 HOH A 130 630 210 HOH HOH . E 5 HOH A 131 631 95 HOH HOH . E 5 HOH A 132 632 88 HOH HOH . E 5 HOH A 133 633 213 HOH HOH . E 5 HOH A 134 634 102 HOH HOH . E 5 HOH A 135 635 214 HOH HOH . E 5 HOH A 136 636 149 HOH HOH . E 5 HOH A 137 637 159 HOH HOH . E 5 HOH A 138 638 140 HOH HOH . E 5 HOH A 139 639 125 HOH HOH . E 5 HOH A 140 640 189 HOH HOH . E 5 HOH A 141 641 178 HOH HOH . E 5 HOH A 142 642 47 HOH HOH . E 5 HOH A 143 643 193 HOH HOH . E 5 HOH A 144 644 212 HOH HOH . E 5 HOH A 145 645 105 HOH HOH . E 5 HOH A 146 646 116 HOH HOH . E 5 HOH A 147 647 145 HOH HOH . E 5 HOH A 148 648 191 HOH HOH . E 5 HOH A 149 649 181 HOH HOH . E 5 HOH A 150 650 148 HOH HOH . E 5 HOH A 151 651 130 HOH HOH . E 5 HOH A 152 652 144 HOH HOH . E 5 HOH A 153 653 138 HOH HOH . E 5 HOH A 154 654 66 HOH HOH . E 5 HOH A 155 655 175 HOH HOH . E 5 HOH A 156 656 5 HOH HOH . E 5 HOH A 157 657 208 HOH HOH . E 5 HOH A 158 658 65 HOH HOH . E 5 HOH A 159 659 203 HOH HOH . E 5 HOH A 160 660 104 HOH HOH . E 5 HOH A 161 661 49 HOH HOH . E 5 HOH A 162 662 201 HOH HOH . E 5 HOH A 163 663 197 HOH HOH . E 5 HOH A 164 664 124 HOH HOH . E 5 HOH A 165 665 169 HOH HOH . E 5 HOH A 166 666 207 HOH HOH . E 5 HOH A 167 667 53 HOH HOH . E 5 HOH A 168 668 143 HOH HOH . E 5 HOH A 169 669 155 HOH HOH . E 5 HOH A 170 670 132 HOH HOH . E 5 HOH A 171 671 112 HOH HOH . E 5 HOH A 172 672 172 HOH HOH . E 5 HOH A 173 673 137 HOH HOH . E 5 HOH A 174 674 163 HOH HOH . E 5 HOH A 175 675 166 HOH HOH . E 5 HOH A 176 676 80 HOH HOH . E 5 HOH A 177 677 107 HOH HOH . E 5 HOH A 178 678 108 HOH HOH . E 5 HOH A 179 679 91 HOH HOH . E 5 HOH A 180 680 176 HOH HOH . E 5 HOH A 181 681 61 HOH HOH . E 5 HOH A 182 682 168 HOH HOH . E 5 HOH A 183 683 98 HOH HOH . E 5 HOH A 184 684 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -18.797 -9.777 -12.176 1 31.55 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 3 -17.617 -9.088 -11.84 1 34.03 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 3 -18.645 -11.264 -11.719 1 27.91 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 3 -17.384 -11.766 -12.015 1 23.86 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 3 -18.978 -11.287 -10.183 1 26.05 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 3 -19.181 -12.634 -9.782 1 16.84 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 746 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #