data_7BE4 # _model_server_result.job_id 7tPXhw09GmFRnBtfwOzM1A _model_server_result.datetime_utc '2025-01-10 15:36:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7be4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7BE4 # _exptl.entry_id 7BE4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.83 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{R})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BE4 _cell.length_a 66.46 _cell.length_b 75.24 _cell.length_c 78.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BE4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H45 N7 O5 S' _chem_comp.formula_weight 663.83 _chem_comp.id TK5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-azanyl-~{N}-[[4-[[(2~{S})-4-cyclohexyl-1-[[(3~{R})-1-methylsulfonylpiperidin-3-yl]amino]-1-oxidanylidene-butan-2-yl]carbamoyl]phenyl]methyl]-1-phenyl-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C31 TK5 doub 306 n y C30 C29 TK5 sing 307 n y C31 C32 TK5 sing 308 n y C29 C28 TK5 doub 309 n y C32 C27 TK5 doub 310 n y C28 C27 TK5 sing 311 n y C27 N5 TK5 sing 312 n n N4 C26 TK5 sing 313 n n N5 C26 TK5 sing 314 n y N5 N6 TK5 sing 315 n y C26 C25 TK5 doub 316 n y N6 C33 TK5 doub 317 n y C25 C33 TK5 sing 318 n y C25 C24 TK5 sing 319 n n O4 C24 TK5 doub 320 n n C24 N3 TK5 sing 321 n n N3 C23 TK5 sing 322 n n C23 C22 TK5 sing 323 n n C21 C22 TK5 doub 324 n y C21 C20 TK5 sing 325 n y C22 C19 TK5 sing 326 n y C20 C17 TK5 doub 327 n y C19 C18 TK5 doub 328 n y C17 C18 TK5 sing 329 n y C17 C TK5 sing 330 n n O C TK5 doub 331 n n C8 C7 TK5 sing 332 n n C8 C3 TK5 sing 333 n n C7 C6 TK5 sing 334 n n C N TK5 sing 335 n n N C1 TK5 sing 336 n n N1 C3 TK5 sing 337 n n N1 C2 TK5 sing 338 n n C6 N2 TK5 sing 339 n n C3 C4 TK5 sing 340 n n C1 C2 TK5 sing 341 n n C1 C9 TK5 sing 342 n n C2 O3 TK5 doub 343 n n C4 N2 TK5 sing 344 n n C13 C12 TK5 sing 345 n n C13 C14 TK5 sing 346 n n N2 S TK5 sing 347 n n C5 S TK5 sing 348 n n C12 C11 TK5 sing 349 n n C9 C10 TK5 sing 350 n n C11 C10 TK5 sing 351 n n C11 C16 TK5 sing 352 n n S O1 TK5 doub 353 n n S O2 TK5 doub 354 n n C14 C15 TK5 sing 355 n n C15 C16 TK5 sing 356 n n N1 H1 TK5 sing 357 n n C7 H2 TK5 sing 358 n n C7 H3 TK5 sing 359 n n C8 H4 TK5 sing 360 n n C8 H5 TK5 sing 361 n n C9 H6 TK5 sing 362 n n C9 H7 TK5 sing 363 n n C1 H8 TK5 sing 364 n n C5 H9 TK5 sing 365 n n C5 H10 TK5 sing 366 n n C5 H11 TK5 sing 367 n n C6 H12 TK5 sing 368 n n C6 H13 TK5 sing 369 n n N3 H14 TK5 sing 370 n n C4 H15 TK5 sing 371 n n C4 H16 TK5 sing 372 n n C3 H17 TK5 sing 373 n n N4 H18 TK5 sing 374 n n N4 H19 TK5 sing 375 n n C33 H20 TK5 sing 376 n n C32 H21 TK5 sing 377 n n C31 H22 TK5 sing 378 n n C30 H23 TK5 sing 379 n n C29 H24 TK5 sing 380 n n C28 H25 TK5 sing 381 n n C23 H26 TK5 sing 382 n n C23 H27 TK5 sing 383 n n C19 H28 TK5 sing 384 n n C18 H29 TK5 sing 385 n n C21 H30 TK5 sing 386 n n C20 H31 TK5 sing 387 n n N H32 TK5 sing 388 n n C10 H33 TK5 sing 389 n n C10 H34 TK5 sing 390 n n C11 H35 TK5 sing 391 n n C16 H36 TK5 sing 392 n n C16 H37 TK5 sing 393 n n C15 H38 TK5 sing 394 n n C15 H39 TK5 sing 395 n n C14 H40 TK5 sing 396 n n C14 H41 TK5 sing 397 n n C13 H42 TK5 sing 398 n n C13 H43 TK5 sing 399 n n C12 H44 TK5 sing 400 n n C12 H45 TK5 sing 401 n n # _atom_sites.entry_id 7BE4 _atom_sites.fract_transf_matrix[1][1] 0.015047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TK5 A 1 401 1 TK5 XXX . C 3 HOH A 1 501 74 HOH HOH . C 3 HOH A 2 502 32 HOH HOH . C 3 HOH A 3 503 7 HOH HOH . C 3 HOH A 4 504 95 HOH HOH . C 3 HOH A 5 505 51 HOH HOH . C 3 HOH A 6 506 86 HOH HOH . C 3 HOH A 7 507 40 HOH HOH . C 3 HOH A 8 508 20 HOH HOH . C 3 HOH A 9 509 26 HOH HOH . C 3 HOH A 10 510 71 HOH HOH . C 3 HOH A 11 511 91 HOH HOH . C 3 HOH A 12 512 14 HOH HOH . C 3 HOH A 13 513 56 HOH HOH . C 3 HOH A 14 514 16 HOH HOH . C 3 HOH A 15 515 64 HOH HOH . C 3 HOH A 16 516 43 HOH HOH . C 3 HOH A 17 517 11 HOH HOH . C 3 HOH A 18 518 93 HOH HOH . C 3 HOH A 19 519 73 HOH HOH . C 3 HOH A 20 520 82 HOH HOH . C 3 HOH A 21 521 55 HOH HOH . C 3 HOH A 22 522 9 HOH HOH . C 3 HOH A 23 523 59 HOH HOH . C 3 HOH A 24 524 90 HOH HOH . C 3 HOH A 25 525 19 HOH HOH . C 3 HOH A 26 526 28 HOH HOH . C 3 HOH A 27 527 101 HOH HOH . C 3 HOH A 28 528 105 HOH HOH . C 3 HOH A 29 529 83 HOH HOH . C 3 HOH A 30 530 76 HOH HOH . C 3 HOH A 31 531 18 HOH HOH . C 3 HOH A 32 532 100 HOH HOH . C 3 HOH A 33 533 57 HOH HOH . C 3 HOH A 34 534 33 HOH HOH . C 3 HOH A 35 535 72 HOH HOH . C 3 HOH A 36 536 75 HOH HOH . C 3 HOH A 37 537 96 HOH HOH . C 3 HOH A 38 538 29 HOH HOH . C 3 HOH A 39 539 58 HOH HOH . C 3 HOH A 40 540 79 HOH HOH . C 3 HOH A 41 541 27 HOH HOH . C 3 HOH A 42 542 17 HOH HOH . C 3 HOH A 43 543 104 HOH HOH . C 3 HOH A 44 544 80 HOH HOH . C 3 HOH A 45 545 92 HOH HOH . C 3 HOH A 46 546 10 HOH HOH . C 3 HOH A 47 547 31 HOH HOH . C 3 HOH A 48 548 98 HOH HOH . C 3 HOH A 49 549 52 HOH HOH . C 3 HOH A 50 550 89 HOH HOH . C 3 HOH A 51 551 8 HOH HOH . C 3 HOH A 52 552 85 HOH HOH . C 3 HOH A 53 553 88 HOH HOH . C 3 HOH A 54 554 15 HOH HOH . C 3 HOH A 55 555 87 HOH HOH . C 3 HOH A 56 556 66 HOH HOH . C 3 HOH A 57 557 97 HOH HOH . C 3 HOH A 58 558 102 HOH HOH . C 3 HOH A 59 559 84 HOH HOH . C 3 HOH A 60 560 81 HOH HOH . C 3 HOH A 61 561 78 HOH HOH . C 3 HOH A 62 562 99 HOH HOH . C 3 HOH A 63 563 94 HOH HOH . C 3 HOH A 64 564 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TK5 . . . B 2 0.221 -7.022 -14.79 1 37.12 ? N1 TK5 401 A 1 HETATM 2 C C7 TK5 . . . B 2 1.327 -10.459 -15.939 1 61.76 ? C7 TK5 401 A 1 HETATM 3 C C8 TK5 . . . B 2 0.551 -9.151 -15.989 1 64.27 ? C8 TK5 401 A 1 HETATM 4 N N2 TK5 . . . B 2 0.861 -10.515 -13.442 1 91.64 ? N2 TK5 401 A 1 HETATM 5 C C9 TK5 . . . B 2 0.041 -3.815 -12.798 1 33.89 ? C9 TK5 401 A 1 HETATM 6 O O1 TK5 . . . B 2 2.23 -9.337 -11.755 1 110.26 ? O1 TK5 401 A 1 HETATM 7 C C1 TK5 . . . B 2 0.019 -4.706 -14.046 1 28.85 ? C1 TK5 401 A 1 HETATM 8 C C5 TK5 . . . B 2 3.584 -10.805 -13.394 1 111.55 ? C5 TK5 401 A 1 HETATM 9 C C6 TK5 . . . B 2 0.962 -11.27 -14.709 1 70.96 ? C6 TK5 401 A 1 HETATM 10 N N3 TK5 . . . B 2 -5.188 -0.599 -19.884 1 28.43 ? N3 TK5 401 A 1 HETATM 11 C C4 TK5 . . . B 2 0.064 -9.278 -13.568 1 78.14 ? C4 TK5 401 A 1 HETATM 12 O O4 TK5 . . . B 2 -4.945 -2.269 -21.378 1 28.45 ? O4 TK5 401 A 1 HETATM 13 C C3 TK5 . . . B 2 0.662 -8.418 -14.668 1 60.04 ? C3 TK5 401 A 1 HETATM 14 O O3 TK5 . . . B 2 -0.19 -6.614 -12.604 1 33.87 ? O3 TK5 401 A 1 HETATM 15 C C2 TK5 . . . B 2 0.007 -6.208 -13.747 1 30.99 ? C2 TK5 401 A 1 HETATM 16 N N4 TK5 . . . B 2 -4.245 -1.525 -24.112 1 45.5 ? N4 TK5 401 A 1 HETATM 17 C C24 TK5 . . . B 2 -4.897 -1.068 -21.099 1 34.44 ? C24 TK5 401 A 1 HETATM 18 C C25 TK5 . . . B 2 -4.462 -0.066 -22.114 1 34.36 ? C25 TK5 401 A 1 HETATM 19 C C33 TK5 . . . B 2 -4.203 1.309 -21.984 1 48.65 ? C33 TK5 401 A 1 HETATM 20 N N6 TK5 . . . B 2 -3.787 1.85 -23.119 1 56.75 ? N6 TK5 401 A 1 HETATM 21 N N5 TK5 . . . B 2 -3.779 0.805 -24.016 1 53.8 ? N5 TK5 401 A 1 HETATM 22 C C27 TK5 . . . B 2 -3.356 1.057 -25.358 1 68.4 ? C27 TK5 401 A 1 HETATM 23 C C32 TK5 . . . B 2 -4.265 0.95 -26.404 1 72.71 ? C32 TK5 401 A 1 HETATM 24 C C31 TK5 . . . B 2 -3.859 1.241 -27.695 1 72.84 ? C31 TK5 401 A 1 HETATM 25 C C30 TK5 . . . B 2 -2.558 1.632 -27.947 1 73.93 ? C30 TK5 401 A 1 HETATM 26 C C29 TK5 . . . B 2 -1.653 1.725 -26.908 1 73.49 ? C29 TK5 401 A 1 HETATM 27 C C28 TK5 . . . B 2 -2.044 1.44 -25.611 1 71.25 ? C28 TK5 401 A 1 HETATM 28 C C26 TK5 . . . B 2 -4.182 -0.359 -23.448 1 43.4 ? C26 TK5 401 A 1 HETATM 29 C C23 TK5 . . . B 2 -5.594 -1.486 -18.802 1 37.66 ? C23 TK5 401 A 1 HETATM 30 C C22 TK5 . . . B 2 -4.413 -2.059 -18.052 1 35.22 ? C22 TK5 401 A 1 HETATM 31 C C19 TK5 . . . B 2 -4.58 -2.686 -16.824 1 32.29 ? C19 TK5 401 A 1 HETATM 32 C C18 TK5 . . . B 2 -3.491 -3.175 -16.117 1 31.7 ? C18 TK5 401 A 1 HETATM 33 C C21 TK5 . . . B 2 -3.125 -1.943 -18.559 1 36.94 ? C21 TK5 401 A 1 HETATM 34 C C20 TK5 . . . B 2 -2.032 -2.406 -17.845 1 23.85 ? C20 TK5 401 A 1 HETATM 35 C C17 TK5 . . . B 2 -2.198 -3.021 -16.609 1 24.75 ? C17 TK5 401 A 1 HETATM 36 C C TK5 . . . B 2 -0.976 -3.406 -15.823 1 27.54 ? C TK5 401 A 1 HETATM 37 O O TK5 . . . B 2 0.103 -2.861 -16.03 1 32.72 ? O TK5 401 A 1 HETATM 38 N N TK5 . . . B 2 -1.108 -4.357 -14.893 1 25.22 ? N TK5 401 A 1 HETATM 39 C C10 TK5 . . . B 2 1.233 -3.904 -11.847 1 29.36 ? C10 TK5 401 A 1 HETATM 40 C C11 TK5 . . . B 2 2.605 -3.601 -12.456 1 33.36 ? C11 TK5 401 A 1 HETATM 41 C C16 TK5 . . . B 2 3.709 -3.818 -11.419 1 26.61 ? C16 TK5 401 A 1 HETATM 42 C C15 TK5 . . . B 2 5.095 -3.368 -11.893 1 23.78 ? C15 TK5 401 A 1 HETATM 43 C C14 TK5 . . . B 2 5.065 -1.931 -12.361 1 27.75 ? C14 TK5 401 A 1 HETATM 44 C C13 TK5 . . . B 2 4.057 -1.765 -13.473 1 26.24 ? C13 TK5 401 A 1 HETATM 45 C C12 TK5 . . . B 2 2.664 -2.175 -13.007 1 27.18 ? C12 TK5 401 A 1 HETATM 46 S S TK5 . . . B 2 2.142 -10.598 -12.42 1 110.84 ? S TK5 401 A 1 HETATM 47 O O2 TK5 . . . B 2 1.966 -11.773 -11.63 1 109.96 ? O2 TK5 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #