data_7BEB # _model_server_result.job_id iV3Jo-evEv3l7HgGK6SWYQ _model_server_result.datetime_utc '2024-11-15 19:20:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7beb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":222}' # _entry.id 7BEB # _exptl.entry_id 7BEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BEB _cell.length_a 78.604 _cell.length_b 78.604 _cell.length_c 37.307 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 W N N ? 3 Y N N ? 3 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A NZ LYS 13 AAA LYS 13 1_555 L RH1 RH . AAA RH 211 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A NH1 ARG 14 AAA ARG 14 1_555 P RH1 RH . AAA RH 215 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A NE2 HIS 15 AAA HIS 15 1_555 P RH1 RH . AAA RH 215 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A OE1 GLU 35 AAA GLU 35 1_555 BA NA NA . AAA NA 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc5 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc7 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc8 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc9 A O LEU 129 AAA LEU 129 1_555 L RH1 RH . AAA RH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc10 A OXT LEU 129 AAA LEU 129 1_555 L RH1 RH . AAA RH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc11 B NA NA . AAA NA 201 1_555 C O1 NO3 . AAA NO3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc12 B NA NA . AAA NA 201 1_555 CA O HOH . AAA HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc13 L RH1 RH . AAA RH 211 1_555 U O ACT . AAA ACT 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc14 L RH1 RH . AAA RH 211 1_555 U OXT ACT . AAA ACT 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc15 L RH1 RH . AAA RH 211 1_555 U OXT ACT . AAA ACT 220 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc16 L RH1 RH . AAA RH 211 1_555 CA O HOH . AAA HOH 301 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc17 M O1 EDO . AAA EDO 212 1_555 BA NA NA . AAA NA 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc18 M O2 EDO . AAA EDO 212 1_555 BA NA NA . AAA NA 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc19 P RH1 RH . AAA RH 215 1_555 Q O ACT . AAA ACT 216 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc20 P RH1 RH . AAA RH 215 1_555 Q OXT ACT . AAA ACT 216 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc21 P RH1 RH . AAA RH 215 1_555 CA O HOH . AAA HOH 315 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc22 P RH1 RH . AAA RH 215 1_555 CA O HOH . AAA HOH 387 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc23 X O ACT . AAA ACT 223 1_555 BA NA NA . AAA NA 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc24 BA NA NA . AAA NA 227 1_555 CA O HOH . AAA HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc25 BA NA NA . AAA NA 227 1_555 CA O HOH . AAA HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 252 n n N O2 NO3 sing 253 n n N O3 NO3 sing 254 n n # _atom_sites.entry_id 7BEB _atom_sites.fract_transf_matrix[1][1] 0.012722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012722 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA AAA 1 201 131 NA NA . C 3 NO3 AAA 1 202 401 NO3 NO3 . D 3 NO3 AAA 1 203 501 NO3 NO3 . E 3 NO3 AAA 1 204 601 NO3 NO3 . F 3 NO3 AAA 1 205 701 NO3 NO3 . G 3 NO3 AAA 1 206 801 NO3 NO3 . H 3 NO3 AAA 1 207 901 NO3 NO3 . I 3 NO3 AAA 1 208 1001 NO3 NO3 . J 3 NO3 AAA 1 209 1101 NO3 NO3 . K 3 NO3 AAA 1 210 1301 NO3 NO3 . L 4 RH AAA 1 211 1601 RH RH . M 5 EDO AAA 1 212 1701 EDO EDO . N 5 EDO AAA 1 213 1801 EDO EDO . O 5 EDO AAA 1 214 1901 EDO EDO . P 4 RH AAA 1 215 2001 RH RH . Q 6 ACT AAA 1 216 2101 ACT ACT . R 6 ACT AAA 1 217 2201 ACT ACT . S 6 ACT AAA 1 218 2401 ACT ACT . T 6 ACT AAA 1 219 2501 ACT ACT . U 6 ACT AAA 1 220 2601 ACT ACT . V 6 ACT AAA 1 221 2701 ACT ACT . W 3 NO3 AAA 1 222 2801 NO3 NO3 . X 6 ACT AAA 1 223 2901 ACT ACT . Y 3 NO3 AAA 1 224 3001 NO3 NO3 . Z 3 NO3 AAA 1 225 3201 NO3 NO3 . AA 6 ACT AAA 1 226 101 ACT ACT . BA 2 NA AAA 1 227 1 NA NA . CA 7 HOH AAA 1 301 60 HOH HOH . CA 7 HOH AAA 2 302 9 HOH HOH . CA 7 HOH AAA 3 303 4 HOH HOH . CA 7 HOH AAA 4 304 10 HOH HOH . CA 7 HOH AAA 5 305 14 HOH HOH . CA 7 HOH AAA 6 306 9 HOH HOH . CA 7 HOH AAA 7 307 58 HOH HOH . CA 7 HOH AAA 8 308 51 HOH HOH . CA 7 HOH AAA 9 309 91 HOH HOH . CA 7 HOH AAA 10 310 29 HOH HOH . CA 7 HOH AAA 11 311 30 HOH HOH . CA 7 HOH AAA 12 312 56 HOH HOH . CA 7 HOH AAA 13 313 70 HOH HOH . CA 7 HOH AAA 14 314 4 HOH HOH . CA 7 HOH AAA 15 315 87 HOH HOH . CA 7 HOH AAA 16 316 41 HOH HOH . CA 7 HOH AAA 17 317 15 HOH HOH . CA 7 HOH AAA 18 318 32 HOH HOH . CA 7 HOH AAA 19 319 17 HOH HOH . CA 7 HOH AAA 20 320 26 HOH HOH . CA 7 HOH AAA 21 321 13 HOH HOH . CA 7 HOH AAA 22 322 6 HOH HOH . CA 7 HOH AAA 23 323 5 HOH HOH . CA 7 HOH AAA 24 324 32 HOH HOH . CA 7 HOH AAA 25 325 58 HOH HOH . CA 7 HOH AAA 26 326 27 HOH HOH . CA 7 HOH AAA 27 327 39 HOH HOH . CA 7 HOH AAA 28 328 57 HOH HOH . CA 7 HOH AAA 29 329 2 HOH HOH . CA 7 HOH AAA 30 330 48 HOH HOH . CA 7 HOH AAA 31 331 34 HOH HOH . CA 7 HOH AAA 32 332 16 HOH HOH . CA 7 HOH AAA 33 333 18 HOH HOH . CA 7 HOH AAA 34 334 7 HOH HOH . CA 7 HOH AAA 35 335 49 HOH HOH . CA 7 HOH AAA 36 336 63 HOH HOH . CA 7 HOH AAA 37 337 12 HOH HOH . CA 7 HOH AAA 38 338 11 HOH HOH . CA 7 HOH AAA 39 339 10 HOH HOH . CA 7 HOH AAA 40 340 83 HOH HOH . CA 7 HOH AAA 41 341 21 HOH HOH . CA 7 HOH AAA 42 342 23 HOH HOH . CA 7 HOH AAA 43 343 72 HOH HOH . CA 7 HOH AAA 44 344 28 HOH HOH . CA 7 HOH AAA 45 345 54 HOH HOH . CA 7 HOH AAA 46 346 85 HOH HOH . CA 7 HOH AAA 47 347 31 HOH HOH . CA 7 HOH AAA 48 348 41 HOH HOH . CA 7 HOH AAA 49 349 30 HOH HOH . CA 7 HOH AAA 50 350 43 HOH HOH . CA 7 HOH AAA 51 351 8 HOH HOH . CA 7 HOH AAA 52 352 80 HOH HOH . CA 7 HOH AAA 53 353 18 HOH HOH . CA 7 HOH AAA 54 354 1 HOH HOH . CA 7 HOH AAA 55 355 3 HOH HOH . CA 7 HOH AAA 56 356 55 HOH HOH . CA 7 HOH AAA 57 357 37 HOH HOH . CA 7 HOH AAA 58 358 53 HOH HOH . CA 7 HOH AAA 59 359 31 HOH HOH . CA 7 HOH AAA 60 360 56 HOH HOH . CA 7 HOH AAA 61 361 84 HOH HOH . CA 7 HOH AAA 62 362 76 HOH HOH . CA 7 HOH AAA 63 363 43 HOH HOH . CA 7 HOH AAA 64 364 67 HOH HOH . CA 7 HOH AAA 65 365 35 HOH HOH . CA 7 HOH AAA 66 366 45 HOH HOH . CA 7 HOH AAA 67 367 49 HOH HOH . CA 7 HOH AAA 68 368 75 HOH HOH . CA 7 HOH AAA 69 369 19 HOH HOH . CA 7 HOH AAA 70 370 36 HOH HOH . CA 7 HOH AAA 71 371 11 HOH HOH . CA 7 HOH AAA 72 372 71 HOH HOH . CA 7 HOH AAA 73 373 24 HOH HOH . CA 7 HOH AAA 74 374 64 HOH HOH . CA 7 HOH AAA 75 375 34 HOH HOH . CA 7 HOH AAA 76 376 3 HOH HOH . CA 7 HOH AAA 77 377 77 HOH HOH . CA 7 HOH AAA 78 378 25 HOH HOH . CA 7 HOH AAA 79 379 22 HOH HOH . CA 7 HOH AAA 80 380 74 HOH HOH . CA 7 HOH AAA 81 381 78 HOH HOH . CA 7 HOH AAA 82 382 69 HOH HOH . CA 7 HOH AAA 83 383 20 HOH HOH . CA 7 HOH AAA 84 384 29 HOH HOH . CA 7 HOH AAA 85 385 36 HOH HOH . CA 7 HOH AAA 86 386 57 HOH HOH . CA 7 HOH AAA 87 387 88 HOH HOH . CA 7 HOH AAA 88 388 35 HOH HOH . CA 7 HOH AAA 89 389 90 HOH HOH . CA 7 HOH AAA 90 390 2 HOH HOH . CA 7 HOH AAA 91 391 68 HOH HOH . CA 7 HOH AAA 92 392 7 HOH HOH . CA 7 HOH AAA 93 393 27 HOH HOH . CA 7 HOH AAA 94 394 59 HOH HOH . CA 7 HOH AAA 95 395 50 HOH HOH . CA 7 HOH AAA 96 396 54 HOH HOH . CA 7 HOH AAA 97 397 86 HOH HOH . CA 7 HOH AAA 98 398 44 HOH HOH . CA 7 HOH AAA 99 399 40 HOH HOH . CA 7 HOH AAA 100 400 21 HOH HOH . CA 7 HOH AAA 101 401 66 HOH HOH . CA 7 HOH AAA 102 402 60 HOH HOH . CA 7 HOH AAA 103 403 33 HOH HOH . CA 7 HOH AAA 104 404 65 HOH HOH . CA 7 HOH AAA 105 405 59 HOH HOH . CA 7 HOH AAA 106 406 13 HOH HOH . CA 7 HOH AAA 107 407 38 HOH HOH . CA 7 HOH AAA 108 408 81 HOH HOH . CA 7 HOH AAA 109 409 12 HOH HOH . CA 7 HOH AAA 110 410 55 HOH HOH . CA 7 HOH AAA 111 411 73 HOH HOH . CA 7 HOH AAA 112 412 79 HOH HOH . CA 7 HOH AAA 113 413 89 HOH HOH . CA 7 HOH AAA 114 414 25 HOH HOH . CA 7 HOH AAA 115 415 52 HOH HOH . CA 7 HOH AAA 116 416 46 HOH HOH . CA 7 HOH AAA 117 417 52 HOH HOH . CA 7 HOH AAA 118 418 23 HOH HOH . CA 7 HOH AAA 119 419 82 HOH HOH . CA 7 HOH AAA 120 420 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . W 3 4.238 32.703 8.988 1 28.37 ? N NO3 222 AAA 1 HETATM 2 O O1 NO3 . . . W 3 4.214 32.892 10.173 1 24.27 ? O1 NO3 222 AAA 1 HETATM 3 O O2 NO3 . . . W 3 3.246 33.116 8.116 1 27.84 ? O2 NO3 222 AAA 1 HETATM 4 O O3 NO3 . . . W 3 5.291 32.053 8.387 1 33.7 ? O3 NO3 222 AAA 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #