data_7BEH # _model_server_result.job_id qpYKjJk0eYVQSSQDtGf0tw _model_server_result.datetime_utc '2024-11-01 16:39:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7beh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 7BEH # _exptl.entry_id 7BEH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BEH _cell.length_a 104.02 _cell.length_b 150.86 _cell.length_c 46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BEH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG E 601 NAG 4 n D NAG 2 A 2 NAG E 602 NAG 4 n D FUC 3 A 3 FUC E 600 FUC 4 n E NAG 1 B 1 NAG H 300 NAG 4 n E NAG 2 B 2 NAG H 301 NAG 4 n E FUC 3 B 3 FUC H 299 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 E CYS 336 1_555 A SG CYS 38 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 56 E CYS 379 1_555 A SG CYS 109 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 68 E CYS 391 1_555 A SG CYS 202 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 157 E CYS 480 1_555 A SG CYS 165 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 35 H CYS 22 1_555 B SG CYS 109 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 162 H CYS 149 1_555 B SG CYS 218 H CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 35 L CYS 22 1_555 C SG CYS 103 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 C SG CYS 151 L CYS 138 1_555 C SG CYS 210 L CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 20 E ASN 343 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 B ND2 ASN 72 H ASN 59 1_555 E C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 D O6 NAG . A NAG 1 1_555 D C1 FUC . A FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 E O4 NAG . B NAG 1 1_555 E C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 E O6 NAG . B NAG 1 1_555 E C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 400 n n C C2 TRS sing 401 n n C C3 TRS sing 402 n n C N TRS sing 403 n n C1 O1 TRS sing 404 n n C1 H11 TRS sing 405 n n C1 H12 TRS sing 406 n n C2 O2 TRS sing 407 n n C2 H21 TRS sing 408 n n C2 H22 TRS sing 409 n n C3 O3 TRS sing 410 n n C3 H31 TRS sing 411 n n C3 H32 TRS sing 412 n n N HN1 TRS sing 413 n n N HN2 TRS sing 414 n n N HN3 TRS sing 415 n n O1 HO1 TRS sing 416 n n O2 HO2 TRS sing 417 n n O3 HO3 TRS sing 418 n n # _atom_sites.entry_id 7BEH _atom_sites.fract_transf_matrix[1][1] 0.009614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 GOL E 1 701 701 GOL GOL . G 5 GOL H 1 501 501 GOL GOL . H 6 TRS H 1 502 601 TRS TRS . I 6 TRS L 1 301 301 TRS TRS . J 7 HOH E 1 801 40 HOH HOH . J 7 HOH E 2 802 14 HOH HOH . J 7 HOH E 3 803 67 HOH HOH . J 7 HOH E 4 804 1 HOH HOH . J 7 HOH E 5 805 100 HOH HOH . J 7 HOH E 6 806 68 HOH HOH . J 7 HOH E 7 807 5 HOH HOH . J 7 HOH E 8 808 41 HOH HOH . J 7 HOH E 9 809 32 HOH HOH . J 7 HOH E 10 810 24 HOH HOH . J 7 HOH E 11 811 28 HOH HOH . J 7 HOH E 12 812 72 HOH HOH . J 7 HOH E 13 813 61 HOH HOH . J 7 HOH E 14 814 27 HOH HOH . J 7 HOH E 15 815 75 HOH HOH . J 7 HOH E 16 816 20 HOH HOH . J 7 HOH E 17 817 57 HOH HOH . J 7 HOH E 18 818 62 HOH HOH . J 7 HOH E 19 819 39 HOH HOH . J 7 HOH E 20 820 12 HOH HOH . J 7 HOH E 21 821 16 HOH HOH . J 7 HOH E 22 822 19 HOH HOH . J 7 HOH E 23 823 35 HOH HOH . J 7 HOH E 24 824 89 HOH HOH . J 7 HOH E 25 825 36 HOH HOH . J 7 HOH E 26 826 87 HOH HOH . J 7 HOH E 27 827 56 HOH HOH . J 7 HOH E 28 828 6 HOH HOH . J 7 HOH E 29 829 91 HOH HOH . J 7 HOH E 30 830 73 HOH HOH . J 7 HOH E 31 831 94 HOH HOH . J 7 HOH E 32 832 64 HOH HOH . J 7 HOH E 33 833 86 HOH HOH . J 7 HOH E 34 834 51 HOH HOH . J 7 HOH E 35 835 58 HOH HOH . J 7 HOH E 36 836 80 HOH HOH . K 7 HOH H 1 601 65 HOH HOH . K 7 HOH H 2 602 92 HOH HOH . K 7 HOH H 3 603 4 HOH HOH . K 7 HOH H 4 604 7 HOH HOH . K 7 HOH H 5 605 59 HOH HOH . K 7 HOH H 6 606 10 HOH HOH . K 7 HOH H 7 607 3 HOH HOH . K 7 HOH H 8 608 47 HOH HOH . K 7 HOH H 9 609 53 HOH HOH . K 7 HOH H 10 610 9 HOH HOH . K 7 HOH H 11 611 43 HOH HOH . K 7 HOH H 12 612 18 HOH HOH . K 7 HOH H 13 613 66 HOH HOH . K 7 HOH H 14 614 22 HOH HOH . K 7 HOH H 15 615 25 HOH HOH . K 7 HOH H 16 616 63 HOH HOH . K 7 HOH H 17 617 74 HOH HOH . K 7 HOH H 18 618 90 HOH HOH . K 7 HOH H 19 619 2 HOH HOH . K 7 HOH H 20 620 48 HOH HOH . K 7 HOH H 21 621 52 HOH HOH . K 7 HOH H 22 622 82 HOH HOH . K 7 HOH H 23 623 71 HOH HOH . K 7 HOH H 24 624 33 HOH HOH . K 7 HOH H 25 625 60 HOH HOH . K 7 HOH H 26 626 23 HOH HOH . K 7 HOH H 27 627 8 HOH HOH . K 7 HOH H 28 628 31 HOH HOH . K 7 HOH H 29 629 26 HOH HOH . K 7 HOH H 30 630 17 HOH HOH . K 7 HOH H 31 631 79 HOH HOH . K 7 HOH H 32 632 84 HOH HOH . K 7 HOH H 33 633 54 HOH HOH . K 7 HOH H 34 634 70 HOH HOH . K 7 HOH H 35 635 78 HOH HOH . K 7 HOH H 36 636 81 HOH HOH . K 7 HOH H 37 637 34 HOH HOH . K 7 HOH H 38 638 98 HOH HOH . L 7 HOH L 1 401 13 HOH HOH . L 7 HOH L 2 402 83 HOH HOH . L 7 HOH L 3 403 77 HOH HOH . L 7 HOH L 4 404 29 HOH HOH . L 7 HOH L 5 405 44 HOH HOH . L 7 HOH L 6 406 85 HOH HOH . L 7 HOH L 7 407 97 HOH HOH . L 7 HOH L 8 408 15 HOH HOH . L 7 HOH L 9 409 96 HOH HOH . L 7 HOH L 10 410 95 HOH HOH . L 7 HOH L 11 411 45 HOH HOH . L 7 HOH L 12 412 38 HOH HOH . L 7 HOH L 13 413 93 HOH HOH . L 7 HOH L 14 414 99 HOH HOH . L 7 HOH L 15 415 21 HOH HOH . L 7 HOH L 16 416 11 HOH HOH . L 7 HOH L 17 417 88 HOH HOH . L 7 HOH L 18 418 42 HOH HOH . L 7 HOH L 19 419 30 HOH HOH . L 7 HOH L 20 420 55 HOH HOH . L 7 HOH L 21 421 37 HOH HOH . L 7 HOH L 22 422 49 HOH HOH . L 7 HOH L 23 423 69 HOH HOH . L 7 HOH L 24 424 46 HOH HOH . L 7 HOH L 25 425 50 HOH HOH . L 7 HOH L 26 426 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 6 -31.532 -24.025 7.235 1 67.78 ? C TRS 502 H 1 HETATM 2 C C1 TRS . . . H 6 -32.31 -24.036 5.921 1 65.85 ? C1 TRS 502 H 1 HETATM 3 C C2 TRS . . . H 6 -30.516 -22.883 7.226 1 63.94 ? C2 TRS 502 H 1 HETATM 4 C C3 TRS . . . H 6 -30.836 -25.367 7.439 1 58.68 ? C3 TRS 502 H 1 HETATM 5 N N TRS . . . H 6 -32.473 -23.816 8.341 1 50.16 ? N TRS 502 H 1 HETATM 6 O O1 TRS . . . H 6 -31.517 -23.505 4.88 1 68.54 ? O1 TRS 502 H 1 HETATM 7 O O2 TRS . . . H 6 -29.873 -22.769 8.478 1 53.87 ? O2 TRS 502 H 1 HETATM 8 O O3 TRS . . . H 6 -29.572 -25.373 6.816 1 50.14 ? O3 TRS 502 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #