data_7BEI # _model_server_result.job_id 5fCc0Lj1prWs-Rszgx5jXQ _model_server_result.datetime_utc '2024-11-01 16:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bei # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7BEI # _exptl.entry_id 7BEI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BEI _cell.length_a 81.419 _cell.length_b 150.709 _cell.length_c 145.504 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BEI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 A 1 NAG E 601 NAG 4 n D NAG 2 A 2 NAG E 701 NAG 4 n D FUC 3 A 3 FUC E 801 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 H CYS 22 1_555 A SG CYS 108 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 157 H CYS 144 1_555 A SG CYS 213 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 B SG CYS 36 L CYS 23 1_555 B SG CYS 101 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 149 L CYS 136 1_555 B SG CYS 209 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 C SG CYS 13 E CYS 336 1_555 C SG CYS 38 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf6 C SG CYS 56 E CYS 379 1_555 C SG CYS 109 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 C SG CYS 68 E CYS 391 1_555 C SG CYS 202 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 C SG CYS 157 E CYS 480 1_555 C SG CYS 165 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 C ND2 ASN 20 E ASN 343 1_555 D C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 D O4 NAG . A NAG 1 1_555 D C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 D O6 NAG . A NAG 1 1_555 D C1 FUC . A FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 290 n n N O2 NO3 sing 291 n n N O3 NO3 sing 292 n n # _atom_sites.entry_id 7BEI _atom_sites.fract_transf_matrix[1][1] 0.012282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NO3 H 1 501 501 NO3 NO3 . F 5 NO3 H 1 502 601 NO3 NO3 . G 6 CL H 1 503 1 CL CL . H 6 CL H 1 504 2 CL CL . I 6 CL H 1 505 4 CL CL . J 5 NO3 L 1 301 301 NO3 NO3 . K 6 CL L 1 302 3 CL CL . L 6 CL L 1 303 5 CL CL . M 7 HOH H 1 601 168 HOH HOH . M 7 HOH H 2 602 99 HOH HOH . M 7 HOH H 3 603 12 HOH HOH . M 7 HOH H 4 604 131 HOH HOH . M 7 HOH H 5 605 18 HOH HOH . M 7 HOH H 6 606 134 HOH HOH . M 7 HOH H 7 607 197 HOH HOH . M 7 HOH H 8 608 66 HOH HOH . M 7 HOH H 9 609 39 HOH HOH . M 7 HOH H 10 610 124 HOH HOH . M 7 HOH H 11 611 199 HOH HOH . M 7 HOH H 12 612 51 HOH HOH . M 7 HOH H 13 613 16 HOH HOH . M 7 HOH H 14 614 193 HOH HOH . M 7 HOH H 15 615 4 HOH HOH . M 7 HOH H 16 616 98 HOH HOH . M 7 HOH H 17 617 54 HOH HOH . M 7 HOH H 18 618 123 HOH HOH . M 7 HOH H 19 619 116 HOH HOH . M 7 HOH H 20 620 27 HOH HOH . M 7 HOH H 21 621 126 HOH HOH . M 7 HOH H 22 622 24 HOH HOH . M 7 HOH H 23 623 108 HOH HOH . M 7 HOH H 24 624 81 HOH HOH . M 7 HOH H 25 625 85 HOH HOH . M 7 HOH H 26 626 19 HOH HOH . M 7 HOH H 27 627 48 HOH HOH . M 7 HOH H 28 628 121 HOH HOH . M 7 HOH H 29 629 202 HOH HOH . M 7 HOH H 30 630 20 HOH HOH . M 7 HOH H 31 631 50 HOH HOH . M 7 HOH H 32 632 149 HOH HOH . M 7 HOH H 33 633 96 HOH HOH . M 7 HOH H 34 634 82 HOH HOH . M 7 HOH H 35 635 95 HOH HOH . M 7 HOH H 36 636 111 HOH HOH . M 7 HOH H 37 637 139 HOH HOH . M 7 HOH H 38 638 159 HOH HOH . M 7 HOH H 39 639 10 HOH HOH . M 7 HOH H 40 640 56 HOH HOH . M 7 HOH H 41 641 105 HOH HOH . M 7 HOH H 42 642 187 HOH HOH . M 7 HOH H 43 643 60 HOH HOH . M 7 HOH H 44 644 34 HOH HOH . M 7 HOH H 45 645 5 HOH HOH . M 7 HOH H 46 646 158 HOH HOH . M 7 HOH H 47 647 195 HOH HOH . M 7 HOH H 48 648 157 HOH HOH . M 7 HOH H 49 649 125 HOH HOH . M 7 HOH H 50 650 213 HOH HOH . M 7 HOH H 51 651 169 HOH HOH . M 7 HOH H 52 652 53 HOH HOH . M 7 HOH H 53 653 33 HOH HOH . M 7 HOH H 54 654 209 HOH HOH . M 7 HOH H 55 655 127 HOH HOH . M 7 HOH H 56 656 172 HOH HOH . M 7 HOH H 57 657 30 HOH HOH . M 7 HOH H 58 658 152 HOH HOH . M 7 HOH H 59 659 68 HOH HOH . M 7 HOH H 60 660 113 HOH HOH . M 7 HOH H 61 661 62 HOH HOH . M 7 HOH H 62 662 166 HOH HOH . M 7 HOH H 63 663 57 HOH HOH . M 7 HOH H 64 664 141 HOH HOH . M 7 HOH H 65 665 129 HOH HOH . M 7 HOH H 66 666 29 HOH HOH . M 7 HOH H 67 667 22 HOH HOH . M 7 HOH H 68 668 119 HOH HOH . M 7 HOH H 69 669 46 HOH HOH . M 7 HOH H 70 670 133 HOH HOH . M 7 HOH H 71 671 91 HOH HOH . M 7 HOH H 72 672 147 HOH HOH . M 7 HOH H 73 673 94 HOH HOH . M 7 HOH H 74 674 186 HOH HOH . M 7 HOH H 75 675 210 HOH HOH . M 7 HOH H 76 676 73 HOH HOH . M 7 HOH H 77 677 78 HOH HOH . M 7 HOH H 78 678 9 HOH HOH . M 7 HOH H 79 679 196 HOH HOH . M 7 HOH H 80 680 49 HOH HOH . M 7 HOH H 81 681 140 HOH HOH . M 7 HOH H 82 682 206 HOH HOH . M 7 HOH H 83 683 47 HOH HOH . M 7 HOH H 84 684 86 HOH HOH . M 7 HOH H 85 685 201 HOH HOH . M 7 HOH H 86 686 175 HOH HOH . M 7 HOH H 87 687 148 HOH HOH . M 7 HOH H 88 688 182 HOH HOH . M 7 HOH H 89 689 145 HOH HOH . M 7 HOH H 90 690 179 HOH HOH . M 7 HOH H 91 691 137 HOH HOH . M 7 HOH H 92 692 198 HOH HOH . M 7 HOH H 93 693 194 HOH HOH . M 7 HOH H 94 694 181 HOH HOH . M 7 HOH H 95 695 135 HOH HOH . M 7 HOH H 96 696 109 HOH HOH . M 7 HOH H 97 697 93 HOH HOH . M 7 HOH H 98 698 87 HOH HOH . N 7 HOH L 1 401 13 HOH HOH . N 7 HOH L 2 402 102 HOH HOH . N 7 HOH L 3 403 208 HOH HOH . N 7 HOH L 4 404 26 HOH HOH . N 7 HOH L 5 405 67 HOH HOH . N 7 HOH L 6 406 150 HOH HOH . N 7 HOH L 7 407 156 HOH HOH . N 7 HOH L 8 408 176 HOH HOH . N 7 HOH L 9 409 74 HOH HOH . N 7 HOH L 10 410 17 HOH HOH . N 7 HOH L 11 411 160 HOH HOH . N 7 HOH L 12 412 205 HOH HOH . N 7 HOH L 13 413 192 HOH HOH . N 7 HOH L 14 414 8 HOH HOH . N 7 HOH L 15 415 41 HOH HOH . N 7 HOH L 16 416 63 HOH HOH . N 7 HOH L 17 417 163 HOH HOH . N 7 HOH L 18 418 106 HOH HOH . N 7 HOH L 19 419 2 HOH HOH . N 7 HOH L 20 420 59 HOH HOH . N 7 HOH L 21 421 40 HOH HOH . N 7 HOH L 22 422 15 HOH HOH . N 7 HOH L 23 423 144 HOH HOH . N 7 HOH L 24 424 25 HOH HOH . N 7 HOH L 25 425 52 HOH HOH . N 7 HOH L 26 426 100 HOH HOH . N 7 HOH L 27 427 171 HOH HOH . N 7 HOH L 28 428 97 HOH HOH . N 7 HOH L 29 429 28 HOH HOH . N 7 HOH L 30 430 37 HOH HOH . N 7 HOH L 31 431 110 HOH HOH . N 7 HOH L 32 432 64 HOH HOH . N 7 HOH L 33 433 83 HOH HOH . N 7 HOH L 34 434 180 HOH HOH . N 7 HOH L 35 435 32 HOH HOH . N 7 HOH L 36 436 142 HOH HOH . N 7 HOH L 37 437 45 HOH HOH . N 7 HOH L 38 438 151 HOH HOH . N 7 HOH L 39 439 162 HOH HOH . N 7 HOH L 40 440 79 HOH HOH . N 7 HOH L 41 441 92 HOH HOH . N 7 HOH L 42 442 164 HOH HOH . N 7 HOH L 43 443 75 HOH HOH . N 7 HOH L 44 444 65 HOH HOH . N 7 HOH L 45 445 7 HOH HOH . N 7 HOH L 46 446 143 HOH HOH . N 7 HOH L 47 447 118 HOH HOH . N 7 HOH L 48 448 88 HOH HOH . N 7 HOH L 49 449 178 HOH HOH . N 7 HOH L 50 450 31 HOH HOH . N 7 HOH L 51 451 115 HOH HOH . N 7 HOH L 52 452 112 HOH HOH . N 7 HOH L 53 453 170 HOH HOH . N 7 HOH L 54 454 184 HOH HOH . N 7 HOH L 55 455 204 HOH HOH . N 7 HOH L 56 456 189 HOH HOH . N 7 HOH L 57 457 89 HOH HOH . N 7 HOH L 58 458 173 HOH HOH . N 7 HOH L 59 459 130 HOH HOH . N 7 HOH L 60 460 203 HOH HOH . N 7 HOH L 61 461 80 HOH HOH . N 7 HOH L 62 462 55 HOH HOH . N 7 HOH L 63 463 77 HOH HOH . N 7 HOH L 64 464 71 HOH HOH . N 7 HOH L 65 465 117 HOH HOH . N 7 HOH L 66 466 183 HOH HOH . N 7 HOH L 67 467 161 HOH HOH . N 7 HOH L 68 468 174 HOH HOH . O 7 HOH E 1 601 153 HOH HOH . O 7 HOH E 2 602 72 HOH HOH . O 7 HOH E 3 603 21 HOH HOH . O 7 HOH E 4 604 104 HOH HOH . O 7 HOH E 5 605 167 HOH HOH . O 7 HOH E 6 606 38 HOH HOH . O 7 HOH E 7 607 6 HOH HOH . O 7 HOH E 8 608 70 HOH HOH . O 7 HOH E 9 609 3 HOH HOH . O 7 HOH E 10 610 1 HOH HOH . O 7 HOH E 11 611 128 HOH HOH . O 7 HOH E 12 612 69 HOH HOH . O 7 HOH E 13 613 76 HOH HOH . O 7 HOH E 14 614 146 HOH HOH . O 7 HOH E 15 615 188 HOH HOH . O 7 HOH E 16 616 190 HOH HOH . O 7 HOH E 17 617 35 HOH HOH . O 7 HOH E 18 618 107 HOH HOH . O 7 HOH E 19 619 14 HOH HOH . O 7 HOH E 20 620 132 HOH HOH . O 7 HOH E 21 621 154 HOH HOH . O 7 HOH E 22 622 191 HOH HOH . O 7 HOH E 23 623 103 HOH HOH . O 7 HOH E 24 624 120 HOH HOH . O 7 HOH E 25 625 23 HOH HOH . O 7 HOH E 26 626 165 HOH HOH . O 7 HOH E 27 627 138 HOH HOH . O 7 HOH E 28 628 44 HOH HOH . O 7 HOH E 29 629 136 HOH HOH . O 7 HOH E 30 630 84 HOH HOH . O 7 HOH E 31 631 155 HOH HOH . O 7 HOH E 32 632 61 HOH HOH . O 7 HOH E 33 633 101 HOH HOH . O 7 HOH E 34 634 42 HOH HOH . O 7 HOH E 35 635 177 HOH HOH . O 7 HOH E 36 636 11 HOH HOH . O 7 HOH E 37 637 122 HOH HOH . O 7 HOH E 38 638 200 HOH HOH . O 7 HOH E 39 639 58 HOH HOH . O 7 HOH E 40 640 43 HOH HOH . O 7 HOH E 41 641 207 HOH HOH . O 7 HOH E 42 642 90 HOH HOH . O 7 HOH E 43 643 36 HOH HOH . O 7 HOH E 44 644 185 HOH HOH . O 7 HOH E 45 645 114 HOH HOH . O 7 HOH E 46 646 212 HOH HOH . O 7 HOH E 47 647 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . E 5 -15.253 -38.275 14.313 1 74.06 ? N NO3 501 H 1 HETATM 2 O O1 NO3 . . . E 5 -16.054 -38.451 13.387 1 73.98 ? O1 NO3 501 H 1 HETATM 3 O O2 NO3 . . . E 5 -14.703 -37.134 14.489 1 64.47 ? O2 NO3 501 H 1 HETATM 4 O O3 NO3 . . . E 5 -14.981 -39.243 15.096 1 69.11 ? O3 NO3 501 H 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #