data_7BEW # _model_server_result.job_id raLsZhUKohPNt2upY9E8eg _model_server_result.datetime_utc '2024-10-19 20:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7BEW # _exptl.entry_id 7BEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BEW _cell.length_a 90.81 _cell.length_b 90.81 _cell.length_c 224.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_545 y+1/2,x-1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 45.405 -45.405 112.4 3 'crystal symmetry operation' 10_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 90.81 0 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 45.405 45.405 112.4 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 22 A ILE 21 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 A O ARG 25 A ARG 24 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A O ILE 28 A ILE 27 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc4 A O ARG 196 A ARG 195 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 A O ARG 198 A ARG 197 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc6 E NA NA . A NA 404 1_555 F O HOH . A HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BEW _atom_sites.fract_transf_matrix[1][1] 0.011012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011012 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 336 NAP NAP . C 3 PEG A 1 402 1 PEG PEG . D 4 NA A 1 403 2 NA NA . E 4 NA A 1 404 8 NA NA . F 5 HOH A 1 501 85 HOH HOH . F 5 HOH A 2 502 144 HOH HOH . F 5 HOH A 3 503 61 HOH HOH . F 5 HOH A 4 504 221 HOH HOH . F 5 HOH A 5 505 66 HOH HOH . F 5 HOH A 6 506 18 HOH HOH . F 5 HOH A 7 507 87 HOH HOH . F 5 HOH A 8 508 10 HOH HOH . F 5 HOH A 9 509 211 HOH HOH . F 5 HOH A 10 510 213 HOH HOH . F 5 HOH A 11 511 25 HOH HOH . F 5 HOH A 12 512 22 HOH HOH . F 5 HOH A 13 513 13 HOH HOH . F 5 HOH A 14 514 212 HOH HOH . F 5 HOH A 15 515 50 HOH HOH . F 5 HOH A 16 516 2 HOH HOH . F 5 HOH A 17 517 71 HOH HOH . F 5 HOH A 18 518 222 HOH HOH . F 5 HOH A 19 519 22 HOH HOH . F 5 HOH A 20 520 9 HOH HOH . F 5 HOH A 21 521 13 HOH HOH . F 5 HOH A 22 522 19 HOH HOH . F 5 HOH A 23 523 10 HOH HOH . F 5 HOH A 24 524 122 HOH HOH . F 5 HOH A 25 525 105 HOH HOH . F 5 HOH A 26 526 110 HOH HOH . F 5 HOH A 27 527 34 HOH HOH . F 5 HOH A 28 528 5 HOH HOH . F 5 HOH A 29 529 72 HOH HOH . F 5 HOH A 30 530 38 HOH HOH . F 5 HOH A 31 531 74 HOH HOH . F 5 HOH A 32 532 28 HOH HOH . F 5 HOH A 33 533 50 HOH HOH . F 5 HOH A 34 534 44 HOH HOH . F 5 HOH A 35 535 68 HOH HOH . F 5 HOH A 36 536 23 HOH HOH . F 5 HOH A 37 537 7 HOH HOH . F 5 HOH A 38 538 209 HOH HOH . F 5 HOH A 39 539 30 HOH HOH . F 5 HOH A 40 540 66 HOH HOH . F 5 HOH A 41 541 17 HOH HOH . F 5 HOH A 42 542 2 HOH HOH . F 5 HOH A 43 543 84 HOH HOH . F 5 HOH A 44 544 3 HOH HOH . F 5 HOH A 45 545 52 HOH HOH . F 5 HOH A 46 546 92 HOH HOH . F 5 HOH A 47 547 146 HOH HOH . F 5 HOH A 48 548 2 HOH HOH . F 5 HOH A 49 549 32 HOH HOH . F 5 HOH A 50 550 35 HOH HOH . F 5 HOH A 51 551 57 HOH HOH . F 5 HOH A 52 552 67 HOH HOH . F 5 HOH A 53 553 219 HOH HOH . F 5 HOH A 54 554 65 HOH HOH . F 5 HOH A 55 555 49 HOH HOH . F 5 HOH A 56 556 54 HOH HOH . F 5 HOH A 57 557 58 HOH HOH . F 5 HOH A 58 558 11 HOH HOH . F 5 HOH A 59 559 97 HOH HOH . F 5 HOH A 60 560 1 HOH HOH . F 5 HOH A 61 561 25 HOH HOH . F 5 HOH A 62 562 77 HOH HOH . F 5 HOH A 63 563 5 HOH HOH . F 5 HOH A 64 564 21 HOH HOH . F 5 HOH A 65 565 150 HOH HOH . F 5 HOH A 66 566 216 HOH HOH . F 5 HOH A 67 567 59 HOH HOH . F 5 HOH A 68 568 116 HOH HOH . F 5 HOH A 69 569 104 HOH HOH . F 5 HOH A 70 570 49 HOH HOH . F 5 HOH A 71 571 14 HOH HOH . F 5 HOH A 72 572 62 HOH HOH . F 5 HOH A 73 573 13 HOH HOH . F 5 HOH A 74 574 18 HOH HOH . F 5 HOH A 75 575 39 HOH HOH . F 5 HOH A 76 576 8 HOH HOH . F 5 HOH A 77 577 11 HOH HOH . F 5 HOH A 78 578 86 HOH HOH . F 5 HOH A 79 579 46 HOH HOH . F 5 HOH A 80 580 29 HOH HOH . F 5 HOH A 81 581 33 HOH HOH . F 5 HOH A 82 582 207 HOH HOH . F 5 HOH A 83 583 84 HOH HOH . F 5 HOH A 84 584 7 HOH HOH . F 5 HOH A 85 585 109 HOH HOH . F 5 HOH A 86 586 10 HOH HOH . F 5 HOH A 87 587 27 HOH HOH . F 5 HOH A 88 588 40 HOH HOH . F 5 HOH A 89 589 147 HOH HOH . F 5 HOH A 90 590 146 HOH HOH . F 5 HOH A 91 591 218 HOH HOH . F 5 HOH A 92 592 57 HOH HOH . F 5 HOH A 93 593 76 HOH HOH . F 5 HOH A 94 594 20 HOH HOH . F 5 HOH A 95 595 37 HOH HOH . F 5 HOH A 96 596 47 HOH HOH . F 5 HOH A 97 597 73 HOH HOH . F 5 HOH A 98 598 72 HOH HOH . F 5 HOH A 99 599 5 HOH HOH . F 5 HOH A 100 600 26 HOH HOH . F 5 HOH A 101 601 36 HOH HOH . F 5 HOH A 102 602 15 HOH HOH . F 5 HOH A 103 603 55 HOH HOH . F 5 HOH A 104 604 79 HOH HOH . F 5 HOH A 105 605 64 HOH HOH . F 5 HOH A 106 606 148 HOH HOH . F 5 HOH A 107 607 91 HOH HOH . F 5 HOH A 108 608 139 HOH HOH . F 5 HOH A 109 609 3 HOH HOH . F 5 HOH A 110 610 29 HOH HOH . F 5 HOH A 111 611 164 HOH HOH . F 5 HOH A 112 612 90 HOH HOH . F 5 HOH A 113 613 129 HOH HOH . F 5 HOH A 114 614 210 HOH HOH . F 5 HOH A 115 615 95 HOH HOH . F 5 HOH A 116 616 42 HOH HOH . F 5 HOH A 117 617 6 HOH HOH . F 5 HOH A 118 618 123 HOH HOH . F 5 HOH A 119 619 179 HOH HOH . F 5 HOH A 120 620 53 HOH HOH . F 5 HOH A 121 621 32 HOH HOH . F 5 HOH A 122 622 42 HOH HOH . F 5 HOH A 123 623 154 HOH HOH . F 5 HOH A 124 624 18 HOH HOH . F 5 HOH A 125 625 80 HOH HOH . F 5 HOH A 126 626 99 HOH HOH . F 5 HOH A 127 627 1 HOH HOH . F 5 HOH A 128 628 217 HOH HOH . F 5 HOH A 129 629 220 HOH HOH . F 5 HOH A 130 630 78 HOH HOH . F 5 HOH A 131 631 121 HOH HOH . F 5 HOH A 132 632 121 HOH HOH . F 5 HOH A 133 633 145 HOH HOH . F 5 HOH A 134 634 4 HOH HOH . F 5 HOH A 135 635 223 HOH HOH . F 5 HOH A 136 636 93 HOH HOH . F 5 HOH A 137 637 208 HOH HOH . F 5 HOH A 138 638 57 HOH HOH . F 5 HOH A 139 639 24 HOH HOH . F 5 HOH A 140 640 13 HOH HOH . F 5 HOH A 141 641 134 HOH HOH . F 5 HOH A 142 642 201 HOH HOH . F 5 HOH A 143 643 185 HOH HOH . F 5 HOH A 144 644 215 HOH HOH . F 5 HOH A 145 645 88 HOH HOH . F 5 HOH A 146 646 132 HOH HOH . F 5 HOH A 147 647 196 HOH HOH . F 5 HOH A 148 648 12 HOH HOH . F 5 HOH A 149 649 3 HOH HOH . F 5 HOH A 150 650 197 HOH HOH . F 5 HOH A 151 651 8 HOH HOH . F 5 HOH A 152 652 199 HOH HOH . F 5 HOH A 153 653 178 HOH HOH . F 5 HOH A 154 654 12 HOH HOH . F 5 HOH A 155 655 17 HOH HOH . F 5 HOH A 156 656 214 HOH HOH . F 5 HOH A 157 657 103 HOH HOH . F 5 HOH A 158 658 206 HOH HOH . F 5 HOH A 159 659 202 HOH HOH . F 5 HOH A 160 660 122 HOH HOH . F 5 HOH A 161 661 45 HOH HOH . F 5 HOH A 162 662 133 HOH HOH . F 5 HOH A 163 663 32 HOH HOH . F 5 HOH A 164 664 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 39.541 _atom_site.Cartn_y -11.274 _atom_site.Cartn_z 49.742 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #