data_7BF6
#
_model_server_result.job_id            vGTcpEQUvYRfj2c2bsI9sQ 
_model_server_result.datetime_utc      '2024-11-15 21:59:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":201}' 
#
_entry.id    7BF6 
#
_exptl.entry_id    7BF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              291.263 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.87 
_cell.angle_gamma         90 
_cell.entry_id            7BF6 
_cell.length_a            157.238 
_cell.length_b            30.476 
_cell.length_c            111.685 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,L 1 1 
B,H,M 2 1 
C,I,J,K,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C12 H13 N5 O4' 
_chem_comp.formula_weight    291.263 
_chem_comp.id                U08 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Remdesivir, reacted form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C6 U08 sing 339 n n 
O3 C3 U08 sing 340 n n 
C6 C4 U08 sing 341 n n 
C3 C4 U08 sing 342 n n 
C3 C2 U08 sing 343 n n 
C4 O1 U08 sing 344 n n 
C2 O2 U08 sing 345 n n 
C2 C1 U08 sing 346 n n 
O1 C1 U08 sing 347 n n 
C1 C8 U08 sing 348 n n 
C1 C5 U08 sing 349 n n 
C8 N3 U08 trip 350 n n 
C5 C7 U08 doub 351 n y 
C5 N1 U08 sing 352 n y 
C7 C10 U08 sing 353 n y 
N2 N1 U08 sing 354 n y 
N2 C12 U08 doub 355 n y 
N1 C9 U08 sing 356 n y 
C12 N4 U08 sing 357 n y 
C10 C9 U08 doub 358 n y 
C9 C11 U08 sing 359 n y 
N4 C11 U08 doub 360 n y 
C11 N5 U08 sing 361 n n 
C6 H1 U08 sing 362 n n 
C6 H2 U08 sing 363 n n 
C2 H3 U08 sing 364 n n 
C4 H4 U08 sing 365 n n 
O2 H5 U08 sing 366 n n 
O4 H6 U08 sing 367 n n 
C7 H7 U08 sing 368 n n 
C10 H8 U08 sing 369 n n 
C12 H9 U08 sing 370 n n 
C3 H10 U08 sing 371 n n 
N5 H11 U08 sing 372 n n 
N5 H12 U08 sing 373 n n 
O3 H13 U08 sing 374 n n 
#
_atom_sites.entry_id                     7BF6 
_atom_sites.fract_transf_matrix[1][1]    0.00636 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003652 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.032813 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010325 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 U08 A 1 201 1 U08 YYY . 
E 3 EDO A 1 202 1 EDO EDO . 
F 3 EDO A 1 203 2 EDO EDO . 
G 3 EDO A 1 204 4 EDO EDO . 
H 2 U08 B 1 201 2 U08 YYY . 
I 2 U08 C 1 201 3 U08 YYY . 
J 3 EDO C 1 202 5 EDO EDO . 
K 3 EDO C 1 203 6 EDO EDO . 
L 4 HOH A 1 301 75 HOH HOH . 
L 4 HOH A 2 302 144 HOH HOH . 
L 4 HOH A 3 303 123 HOH HOH . 
L 4 HOH A 4 304 156 HOH HOH . 
L 4 HOH A 5 305 76 HOH HOH . 
L 4 HOH A 6 306 133 HOH HOH . 
L 4 HOH A 7 307 174 HOH HOH . 
L 4 HOH A 8 308 146 HOH HOH . 
L 4 HOH A 9 309 109 HOH HOH . 
L 4 HOH A 10 310 1 HOH HOH . 
L 4 HOH A 11 311 20 HOH HOH . 
L 4 HOH A 12 312 169 HOH HOH . 
L 4 HOH A 13 313 28 HOH HOH . 
L 4 HOH A 14 314 24 HOH HOH . 
L 4 HOH A 15 315 143 HOH HOH . 
L 4 HOH A 16 316 145 HOH HOH . 
L 4 HOH A 17 317 168 HOH HOH . 
L 4 HOH A 18 318 154 HOH HOH . 
L 4 HOH A 19 319 147 HOH HOH . 
L 4 HOH A 20 320 31 HOH HOH . 
L 4 HOH A 21 321 137 HOH HOH . 
L 4 HOH A 22 322 173 HOH HOH . 
L 4 HOH A 23 323 164 HOH HOH . 
L 4 HOH A 24 324 29 HOH HOH . 
L 4 HOH A 25 325 141 HOH HOH . 
L 4 HOH A 26 326 138 HOH HOH . 
L 4 HOH A 27 327 22 HOH HOH . 
L 4 HOH A 28 328 14 HOH HOH . 
L 4 HOH A 29 329 142 HOH HOH . 
L 4 HOH A 30 330 100 HOH HOH . 
L 4 HOH A 31 331 157 HOH HOH . 
L 4 HOH A 32 332 2 HOH HOH . 
L 4 HOH A 33 333 148 HOH HOH . 
L 4 HOH A 34 334 34 HOH HOH . 
L 4 HOH A 35 335 83 HOH HOH . 
L 4 HOH A 36 336 136 HOH HOH . 
L 4 HOH A 37 337 23 HOH HOH . 
L 4 HOH A 38 338 122 HOH HOH . 
L 4 HOH A 39 339 54 HOH HOH . 
L 4 HOH A 40 340 191 HOH HOH . 
L 4 HOH A 41 341 53 HOH HOH . 
L 4 HOH A 42 342 6 HOH HOH . 
L 4 HOH A 43 343 59 HOH HOH . 
L 4 HOH A 44 344 134 HOH HOH . 
L 4 HOH A 45 345 149 HOH HOH . 
L 4 HOH A 46 346 118 HOH HOH . 
L 4 HOH A 47 347 151 HOH HOH . 
L 4 HOH A 48 348 36 HOH HOH . 
L 4 HOH A 49 349 127 HOH HOH . 
L 4 HOH A 50 350 32 HOH HOH . 
L 4 HOH A 51 351 89 HOH HOH . 
L 4 HOH A 52 352 77 HOH HOH . 
L 4 HOH A 53 353 47 HOH HOH . 
L 4 HOH A 54 354 12 HOH HOH . 
L 4 HOH A 55 355 121 HOH HOH . 
L 4 HOH A 56 356 15 HOH HOH . 
L 4 HOH A 57 357 115 HOH HOH . 
L 4 HOH A 58 358 150 HOH HOH . 
L 4 HOH A 59 359 135 HOH HOH . 
L 4 HOH A 60 360 27 HOH HOH . 
L 4 HOH A 61 361 155 HOH HOH . 
L 4 HOH A 62 362 152 HOH HOH . 
L 4 HOH A 63 363 175 HOH HOH . 
L 4 HOH A 64 364 66 HOH HOH . 
L 4 HOH A 65 365 172 HOH HOH . 
L 4 HOH A 66 366 165 HOH HOH . 
L 4 HOH A 67 367 125 HOH HOH . 
L 4 HOH A 68 368 162 HOH HOH . 
L 4 HOH A 69 369 25 HOH HOH . 
L 4 HOH A 70 370 160 HOH HOH . 
L 4 HOH A 71 371 126 HOH HOH . 
L 4 HOH A 72 372 37 HOH HOH . 
L 4 HOH A 73 373 52 HOH HOH . 
L 4 HOH A 74 374 21 HOH HOH . 
L 4 HOH A 75 375 128 HOH HOH . 
L 4 HOH A 76 376 161 HOH HOH . 
L 4 HOH A 77 377 120 HOH HOH . 
L 4 HOH A 78 378 42 HOH HOH . 
L 4 HOH A 79 379 30 HOH HOH . 
L 4 HOH A 80 380 26 HOH HOH . 
L 4 HOH A 81 381 96 HOH HOH . 
L 4 HOH A 82 382 108 HOH HOH . 
L 4 HOH A 83 383 97 HOH HOH . 
L 4 HOH A 84 384 159 HOH HOH . 
L 4 HOH A 85 385 158 HOH HOH . 
L 4 HOH A 86 386 140 HOH HOH . 
L 4 HOH A 87 387 130 HOH HOH . 
L 4 HOH A 88 388 167 HOH HOH . 
L 4 HOH A 89 389 72 HOH HOH . 
L 4 HOH A 90 390 88 HOH HOH . 
L 4 HOH A 91 391 139 HOH HOH . 
L 4 HOH A 92 392 129 HOH HOH . 
L 4 HOH A 93 393 81 HOH HOH . 
L 4 HOH A 94 394 124 HOH HOH . 
L 4 HOH A 95 395 61 HOH HOH . 
L 4 HOH A 96 396 69 HOH HOH . 
L 4 HOH A 97 397 153 HOH HOH . 
M 4 HOH B 1 301 178 HOH HOH . 
M 4 HOH B 2 302 182 HOH HOH . 
M 4 HOH B 3 303 86 HOH HOH . 
M 4 HOH B 4 304 170 HOH HOH . 
M 4 HOH B 5 305 48 HOH HOH . 
M 4 HOH B 6 306 180 HOH HOH . 
M 4 HOH B 7 307 82 HOH HOH . 
M 4 HOH B 8 308 65 HOH HOH . 
M 4 HOH B 9 309 8 HOH HOH . 
M 4 HOH B 10 310 177 HOH HOH . 
M 4 HOH B 11 311 79 HOH HOH . 
M 4 HOH B 12 312 60 HOH HOH . 
M 4 HOH B 13 313 105 HOH HOH . 
M 4 HOH B 14 314 183 HOH HOH . 
M 4 HOH B 15 315 112 HOH HOH . 
M 4 HOH B 16 316 56 HOH HOH . 
M 4 HOH B 17 317 39 HOH HOH . 
M 4 HOH B 18 318 73 HOH HOH . 
M 4 HOH B 19 319 92 HOH HOH . 
M 4 HOH B 20 320 176 HOH HOH . 
M 4 HOH B 21 321 98 HOH HOH . 
M 4 HOH B 22 322 44 HOH HOH . 
M 4 HOH B 23 323 10 HOH HOH . 
M 4 HOH B 24 324 91 HOH HOH . 
M 4 HOH B 25 325 17 HOH HOH . 
M 4 HOH B 26 326 41 HOH HOH . 
M 4 HOH B 27 327 171 HOH HOH . 
M 4 HOH B 28 328 189 HOH HOH . 
M 4 HOH B 29 329 110 HOH HOH . 
M 4 HOH B 30 330 38 HOH HOH . 
M 4 HOH B 31 331 179 HOH HOH . 
M 4 HOH B 32 332 116 HOH HOH . 
N 4 HOH C 1 301 188 HOH HOH . 
N 4 HOH C 2 302 186 HOH HOH . 
N 4 HOH C 3 303 4 HOH HOH . 
N 4 HOH C 4 304 184 HOH HOH . 
N 4 HOH C 5 305 107 HOH HOH . 
N 4 HOH C 6 306 19 HOH HOH . 
N 4 HOH C 7 307 18 HOH HOH . 
N 4 HOH C 8 308 95 HOH HOH . 
N 4 HOH C 9 309 57 HOH HOH . 
N 4 HOH C 10 310 80 HOH HOH . 
N 4 HOH C 11 311 43 HOH HOH . 
N 4 HOH C 12 312 33 HOH HOH . 
N 4 HOH C 13 313 190 HOH HOH . 
N 4 HOH C 14 314 187 HOH HOH . 
N 4 HOH C 15 315 16 HOH HOH . 
N 4 HOH C 16 316 11 HOH HOH . 
N 4 HOH C 17 317 64 HOH HOH . 
N 4 HOH C 18 318 9 HOH HOH . 
N 4 HOH C 19 319 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 U08 . . . H 2 3.512 8.786 -22.908 1 47.89 ? C8 U08 201 B 1 
HETATM 2 C C5 U08 . . . H 2 5.541 8.81 -24.178 1 40.92 ? C5 U08 201 B 1 
HETATM 3 C C6 U08 . . . H 2 2.907 7.245 -27.158 1 53.97 ? C6 U08 201 B 1 
HETATM 4 N N1 U08 . . . H 2 6.375 7.839 -23.664 1 39.52 ? N1 U08 201 B 1 
HETATM 5 C C2 U08 . . . H 2 3.402 9.779 -25.25 1 50.14 ? C2 U08 201 B 1 
HETATM 6 N N3 U08 . . . H 2 3.164 8.839 -21.827 1 44.37 ? N3 U08 201 B 1 
HETATM 7 C C4 U08 . . . H 2 2.491 7.655 -25.763 1 54.4 ? C4 U08 201 B 1 
HETATM 8 O O2 U08 . . . H 2 3.265 11.052 -24.653 1 53.42 ? O2 U08 201 B 1 
HETATM 9 N N2 U08 . . . H 2 5.975 6.642 -23.124 1 37.07 ? N2 U08 201 B 1 
HETATM 10 O O4 U08 . . . H 2 1.795 7.266 -28.05 1 60.42 ? O4 U08 201 B 1 
HETATM 11 N N4 U08 . . . H 2 8.288 6.127 -22.753 1 37.44 ? N4 U08 201 B 1 
HETATM 12 C C7 U08 . . . H 2 6.361 9.848 -24.594 1 39.07 ? C7 U08 201 B 1 
HETATM 13 C C1 U08 . . . H 2 4.026 8.742 -24.288 1 49.03 ? C1 U08 201 B 1 
HETATM 14 C C10 U08 . . . H 2 7.705 9.493 -24.336 1 38.49 ? C10 U08 201 B 1 
HETATM 15 C C11 U08 . . . H 2 8.704 7.298 -23.278 1 35.59 ? C11 U08 201 B 1 
HETATM 16 C C12 U08 . . . H 2 6.967 5.885 -22.7 1 37.56 ? C12 U08 201 B 1 
HETATM 17 C C3 U08 . . . H 2 2.079 9.116 -25.628 1 52.48 ? C3 U08 201 B 1 
HETATM 18 C C9 U08 . . . H 2 7.707 8.225 -23.755 1 37.68 ? C9 U08 201 B 1 
HETATM 19 N N5 U08 . . . H 2 10.011 7.524 -23.361 1 37.78 ? N5 U08 201 B 1 
HETATM 20 O O1 U08 . . . H 2 3.591 7.478 -24.84 1 52.35 ? O1 U08 201 B 1 
HETATM 21 O O3 U08 . . . H 2 1.078 9.247 -24.628 1 49.82 ? O3 U08 201 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#