data_7BGX
#
_model_server_result.job_id            SOKx-F-10JaJz2qtr9udJw 
_model_server_result.datetime_utc      '2025-06-28 20:21:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bgx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7BGX 
#
_exptl.entry_id    7BGX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7BGX 
_cell.length_a            52.79 
_cell.length_b            52.79 
_cell.length_c            108.82 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BGX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -36.273333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 AAA CYS 66 1_555 A SG CYS 160 AAA CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 106 AAA CYS 106 1_555 A SG CYS 119 AAA CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7BGX 
_atom_sites.fract_transf_matrix[1][1]    0.018943 
_atom_sites.fract_transf_matrix[1][2]    0.010937 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009189 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL AAA 1 301 301 GOL GOL . 
C 2 GOL AAA 1 302 401 GOL GOL . 
D 3 SO4 AAA 1 303 1 SO4 SO4 . 
E 4 HOH AAA 1 401 21 HOH HOH . 
E 4 HOH AAA 2 402 48 HOH HOH . 
E 4 HOH AAA 3 403 8 HOH HOH . 
E 4 HOH AAA 4 404 2 HOH HOH . 
E 4 HOH AAA 5 405 55 HOH HOH . 
E 4 HOH AAA 6 406 27 HOH HOH . 
E 4 HOH AAA 7 407 30 HOH HOH . 
E 4 HOH AAA 8 408 37 HOH HOH . 
E 4 HOH AAA 9 409 38 HOH HOH . 
E 4 HOH AAA 10 410 43 HOH HOH . 
E 4 HOH AAA 11 411 1 HOH HOH . 
E 4 HOH AAA 12 412 45 HOH HOH . 
E 4 HOH AAA 13 413 62 HOH HOH . 
E 4 HOH AAA 14 414 17 HOH HOH . 
E 4 HOH AAA 15 415 36 HOH HOH . 
E 4 HOH AAA 16 416 13 HOH HOH . 
E 4 HOH AAA 17 417 22 HOH HOH . 
E 4 HOH AAA 18 418 4 HOH HOH . 
E 4 HOH AAA 19 419 11 HOH HOH . 
E 4 HOH AAA 20 420 24 HOH HOH . 
E 4 HOH AAA 21 421 9 HOH HOH . 
E 4 HOH AAA 22 422 16 HOH HOH . 
E 4 HOH AAA 23 423 26 HOH HOH . 
E 4 HOH AAA 24 424 58 HOH HOH . 
E 4 HOH AAA 25 425 25 HOH HOH . 
E 4 HOH AAA 26 426 61 HOH HOH . 
E 4 HOH AAA 27 427 20 HOH HOH . 
E 4 HOH AAA 28 428 46 HOH HOH . 
E 4 HOH AAA 29 429 40 HOH HOH . 
E 4 HOH AAA 30 430 31 HOH HOH . 
E 4 HOH AAA 31 431 7 HOH HOH . 
E 4 HOH AAA 32 432 65 HOH HOH . 
E 4 HOH AAA 33 433 29 HOH HOH . 
E 4 HOH AAA 34 434 3 HOH HOH . 
E 4 HOH AAA 35 435 64 HOH HOH . 
E 4 HOH AAA 36 436 35 HOH HOH . 
E 4 HOH AAA 37 437 41 HOH HOH . 
E 4 HOH AAA 38 438 12 HOH HOH . 
E 4 HOH AAA 39 439 47 HOH HOH . 
E 4 HOH AAA 40 440 53 HOH HOH . 
E 4 HOH AAA 41 441 5 HOH HOH . 
E 4 HOH AAA 42 442 10 HOH HOH . 
E 4 HOH AAA 43 443 15 HOH HOH . 
E 4 HOH AAA 44 444 23 HOH HOH . 
E 4 HOH AAA 45 445 14 HOH HOH . 
E 4 HOH AAA 46 446 44 HOH HOH . 
E 4 HOH AAA 47 447 52 HOH HOH . 
E 4 HOH AAA 48 448 60 HOH HOH . 
E 4 HOH AAA 49 449 42 HOH HOH . 
E 4 HOH AAA 50 450 50 HOH HOH . 
E 4 HOH AAA 51 451 59 HOH HOH . 
E 4 HOH AAA 52 452 33 HOH HOH . 
E 4 HOH AAA 53 453 54 HOH HOH . 
E 4 HOH AAA 54 454 66 HOH HOH . 
E 4 HOH AAA 55 455 28 HOH HOH . 
E 4 HOH AAA 56 456 57 HOH HOH . 
E 4 HOH AAA 57 457 63 HOH HOH . 
E 4 HOH AAA 58 458 39 HOH HOH . 
E 4 HOH AAA 59 459 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -3.249 -4.744 -17.271 1 61.4 0 C1 GOL 301 AAA 1 
HETATM 2 O O1 GOL . . . B 2 -3.332 -3.323 -17.301 1 62.8 0 O1 GOL 301 AAA 1 
HETATM 3 C C2 GOL . . . B 2 -4.541 -5.345 -16.748 1 63.44 0 C2 GOL 301 AAA 1 
HETATM 4 O O2 GOL . . . B 2 -4.269 -6.34 -15.757 1 59.91 0 O2 GOL 301 AAA 1 
HETATM 5 C C3 GOL . . . B 2 -5.416 -5.931 -17.84 1 59.86 0 C3 GOL 301 AAA 1 
HETATM 6 O O3 GOL . . . B 2 -6.24 -6.989 -17.35 1 59.47 0 O3 GOL 301 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#