data_7BGZ
#
_model_server_result.job_id            alMJ0iAEbz1I7l9tgEODmA 
_model_server_result.datetime_utc      '2025-07-07 19:58:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bgz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    7BGZ 
#
_exptl.entry_id    7BGZ 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              172.265 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DECANOIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7BGZ 
_cell.length_a            53.56 
_cell.length_b            53.56 
_cell.length_c            110.88 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 36.96 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 66 AAA CYS 66 1_555 A SG CYS 160 AAA CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 106 AAA CYS 106 1_555 A SG CYS 119 AAA CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C10 H20 O2' 
_chem_comp.formula_weight    172.265 
_chem_comp.id                DKA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DECANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 DKA doub 83 n n 
C1 C2 DKA sing 84 n n 
C1 O2 DKA sing 85 n n 
C2 C3 DKA sing 86 n n 
C2 H21 DKA sing 87 n n 
C2 H22 DKA sing 88 n n 
C3 C4 DKA sing 89 n n 
C3 H31 DKA sing 90 n n 
C3 H32 DKA sing 91 n n 
C4 C5 DKA sing 92 n n 
C4 H41 DKA sing 93 n n 
C4 H42 DKA sing 94 n n 
C5 C6 DKA sing 95 n n 
C5 H51 DKA sing 96 n n 
C5 H52 DKA sing 97 n n 
C6 C7 DKA sing 98 n n 
C6 H61 DKA sing 99 n n 
C6 H62 DKA sing 100 n n 
C7 C8 DKA sing 101 n n 
C7 H71 DKA sing 102 n n 
C7 H72 DKA sing 103 n n 
C8 C9 DKA sing 104 n n 
C8 H81 DKA sing 105 n n 
C8 H82 DKA sing 106 n n 
C9 C10 DKA sing 107 n n 
C9 H91 DKA sing 108 n n 
C9 H92 DKA sing 109 n n 
C10 H101 DKA sing 110 n n 
C10 H102 DKA sing 111 n n 
C10 H103 DKA sing 112 n n 
O2 HO2 DKA sing 113 n n 
#
_atom_sites.entry_id                     7BGZ 
_atom_sites.fract_transf_matrix[1][1]    0.018671 
_atom_sites.fract_transf_matrix[1][2]    0.01078 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021559 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009019 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DKA AAA 1 201 201 DKA DKA . 
C 3 EDO AAA 1 202 301 EDO EDO . 
D 4 HOH AAA 1 301 48 HOH HOH . 
D 4 HOH AAA 2 302 28 HOH HOH . 
D 4 HOH AAA 3 303 2 HOH HOH . 
D 4 HOH AAA 4 304 32 HOH HOH . 
D 4 HOH AAA 5 305 58 HOH HOH . 
D 4 HOH AAA 6 306 34 HOH HOH . 
D 4 HOH AAA 7 307 22 HOH HOH . 
D 4 HOH AAA 8 308 60 HOH HOH . 
D 4 HOH AAA 9 309 59 HOH HOH . 
D 4 HOH AAA 10 310 19 HOH HOH . 
D 4 HOH AAA 11 311 12 HOH HOH . 
D 4 HOH AAA 12 312 7 HOH HOH . 
D 4 HOH AAA 13 313 23 HOH HOH . 
D 4 HOH AAA 14 314 9 HOH HOH . 
D 4 HOH AAA 15 315 42 HOH HOH . 
D 4 HOH AAA 16 316 29 HOH HOH . 
D 4 HOH AAA 17 317 3 HOH HOH . 
D 4 HOH AAA 18 318 8 HOH HOH . 
D 4 HOH AAA 19 319 24 HOH HOH . 
D 4 HOH AAA 20 320 39 HOH HOH . 
D 4 HOH AAA 21 321 31 HOH HOH . 
D 4 HOH AAA 22 322 18 HOH HOH . 
D 4 HOH AAA 23 323 6 HOH HOH . 
D 4 HOH AAA 24 324 35 HOH HOH . 
D 4 HOH AAA 25 325 11 HOH HOH . 
D 4 HOH AAA 26 326 57 HOH HOH . 
D 4 HOH AAA 27 327 45 HOH HOH . 
D 4 HOH AAA 28 328 52 HOH HOH . 
D 4 HOH AAA 29 329 15 HOH HOH . 
D 4 HOH AAA 30 330 47 HOH HOH . 
D 4 HOH AAA 31 331 37 HOH HOH . 
D 4 HOH AAA 32 332 56 HOH HOH . 
D 4 HOH AAA 33 333 4 HOH HOH . 
D 4 HOH AAA 34 334 36 HOH HOH . 
D 4 HOH AAA 35 335 41 HOH HOH . 
D 4 HOH AAA 36 336 46 HOH HOH . 
D 4 HOH AAA 37 337 13 HOH HOH . 
D 4 HOH AAA 38 338 43 HOH HOH . 
D 4 HOH AAA 39 339 10 HOH HOH . 
D 4 HOH AAA 40 340 30 HOH HOH . 
D 4 HOH AAA 41 341 40 HOH HOH . 
D 4 HOH AAA 42 342 61 HOH HOH . 
D 4 HOH AAA 43 343 53 HOH HOH . 
D 4 HOH AAA 44 344 33 HOH HOH . 
D 4 HOH AAA 45 345 5 HOH HOH . 
D 4 HOH AAA 46 346 62 HOH HOH . 
D 4 HOH AAA 47 347 27 HOH HOH . 
D 4 HOH AAA 48 348 44 HOH HOH . 
D 4 HOH AAA 49 349 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DKA . . . B 2 7.131 1.098 36.445 1 76.26 0 C1 DKA 201 AAA 1 
HETATM 2 O O1 DKA . . . B 2 7.116 0.527 35.323 1 70.84 0 O1 DKA 201 AAA 1 
HETATM 3 C C2 DKA . . . B 2 8.489 1.313 37.101 1 72.66 0 C2 DKA 201 AAA 1 
HETATM 4 C C3 DKA . . . B 2 9.292 2.487 36.544 1 70.8 0 C3 DKA 201 AAA 1 
HETATM 5 C C4 DKA . . . B 2 10.706 2.559 37.115 1 67.6 0 C4 DKA 201 AAA 1 
HETATM 6 C C5 DKA . . . B 2 11.569 3.706 36.609 1 64.89 0 C5 DKA 201 AAA 1 
HETATM 7 C C6 DKA . . . B 2 12.63 4.034 37.616 1 64.75 0 C6 DKA 201 AAA 1 
HETATM 8 C C7 DKA . . . B 2 13.829 4.82 37.184 1 65.04 0 C7 DKA 201 AAA 1 
HETATM 9 C C8 DKA . . . B 2 15.04 4.427 38.011 1 66.02 0 C8 DKA 201 AAA 1 
HETATM 10 C C9 DKA . . . B 2 16.127 5.433 38.27 1 66.33 0 C9 DKA 201 AAA 1 
HETATM 11 C C10 DKA . . . B 2 17.171 4.978 39.293 1 65.23 0 C10 DKA 201 AAA 1 
HETATM 12 O O2 DKA . . . B 2 6.086 1.524 37.039 1 74.75 0 O2 DKA 201 AAA 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#