data_7BI7
#
_model_server_result.job_id            Yj_-4BHcXRjpwaoqcFI2eQ 
_model_server_result.datetime_utc      '2024-10-20 00:37:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    7BI7 
#
_exptl.entry_id    7BI7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              671.215 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE(8)-S(7) CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.85 
_cell.angle_gamma         90 
_cell.entry_id            7BI7 
_cell.length_a            121.87 
_cell.length_b            77.64 
_cell.length_c            90.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 240 A CYS 240 1_555 B SG CYS 240 B CYS 240 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 240 A CYS 240 1_555 B SG CYS 240 B CYS 240 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 A SG CYS 18 A CYS 18 1_555 D FE4 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 A SG CYS 18 A CYS 18 1_555 D FE5 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 D FE1 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 A SG CYS 38 A CYS 38 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 A SG CYS 42 A CYS 42 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc6 A SG CYS 45 A CYS 45 1_555 C FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc7 A SG CYS 115 A CYS 115 1_555 D FE3 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? 
metalc ? metalc8 A SG CYS 260 A CYS 260 1_555 D FE7 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc9 A SG CYS 263 A CYS 263 1_555 D FE6 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc10 D FE2 CLF . A CLF 302 1_555 E S H2S . A H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc11 D FE8 CLF . A CLF 302 1_555 E S H2S . A H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 H FE5 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc13 B SG CYS 18 B CYS 18 1_555 H FE4 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc14 B NE2 HIS 31 B HIS 31 1_555 H FE1 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc15 B SG CYS 38 B CYS 38 1_555 G FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc16 B SG CYS 42 B CYS 42 1_555 G FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc17 B SG CYS 45 B CYS 45 1_555 G FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc18 B SG CYS 115 B CYS 115 1_555 H FE3 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc19 B SG CYS 260 B CYS 260 1_555 H FE7 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc20 B SG CYS 263 B CYS 263 1_555 H FE6 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc21 H FE2 CLF . B CLF 302 1_555 I S H2S . B H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc22 H FE8 CLF . B CLF 302 1_555 I S H2S . B H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
#
_chem_comp.formula           'Fe8 S7' 
_chem_comp.formula_weight    671.215 
_chem_comp.id                CLF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE(8)-S(7) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 CLF sing 70 n n 
FE1 S2A CLF sing 71 n n 
FE1 S3A CLF sing 72 n n 
FE2 S1 CLF sing 73 n n 
FE2 S2A CLF sing 74 n n 
FE2 S4A CLF sing 75 n n 
FE3 S2A CLF sing 76 n n 
FE3 S4A CLF sing 77 n n 
FE3 S3A CLF sing 78 n n 
FE4 S1 CLF sing 79 n n 
FE4 S4A CLF sing 80 n n 
FE4 S3A CLF sing 81 n n 
S1 FE5 CLF sing 82 n n 
S1 FE6 CLF sing 83 n n 
S1 FE8 CLF sing 84 n n 
FE5 S2B CLF sing 85 n n 
FE5 S4B CLF sing 86 n n 
FE6 S2B CLF sing 87 n n 
FE6 S3B CLF sing 88 n n 
FE7 S2B CLF sing 89 n n 
FE7 S3B CLF sing 90 n n 
FE7 S4B CLF sing 91 n n 
FE8 S3B CLF sing 92 n n 
FE8 S4B CLF sing 93 n n 
#
_atom_sites.entry_id                     7BI7 
_atom_sites.fract_transf_matrix[1][1]    0.008205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006609 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SF4 A 1 301 301 SF4 SF4 . 
D 3 CLF A 1 302 401 CLF CLF . 
E 4 H2S A 1 303 501 H2S H2S . 
F 5 NO3 A 1 304 601 NO3 NO3 . 
G 2 SF4 B 1 301 301 SF4 SF4 . 
H 3 CLF B 1 302 401 CLF CLF . 
I 4 H2S B 1 303 501 H2S H2S . 
J 6 MLI B 1 304 601 MLI MLI . 
K 7 HOH A 1 401 140 HOH HOH . 
K 7 HOH A 2 402 137 HOH HOH . 
K 7 HOH A 3 403 139 HOH HOH . 
K 7 HOH A 4 404 130 HOH HOH . 
K 7 HOH A 5 405 138 HOH HOH . 
K 7 HOH A 6 406 6 HOH HOH . 
K 7 HOH A 7 407 141 HOH HOH . 
K 7 HOH A 8 408 136 HOH HOH . 
L 7 HOH B 1 401 2 HOH HOH . 
L 7 HOH B 2 402 133 HOH HOH . 
L 7 HOH B 3 403 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 CLF . . . H 3 -12.23 19.99 51.465 0.8 66.34 ? FE1 CLF 302 B 1 
HETATM 2 FE FE2 CLF . . . H 3 -11.173 22.211 51.645 0.8 67.03 ? FE2 CLF 302 B 1 
HETATM 3 FE FE3 CLF . . . H 3 -10.447 20.267 53.556 0.8 67.3 ? FE3 CLF 302 B 1 
HETATM 4 FE FE4 CLF . . . H 3 -9.7 20.236 50.945 0.8 67.68 ? FE4 CLF 302 B 1 
HETATM 5 S S1 CLF . . . H 3 -11.383 21.047 49.478 0.8 67.04 ? S1 CLF 302 B 1 
HETATM 6 S S2A CLF . . . H 3 -12.466 21.325 53.331 0.8 66.73 ? S2A CLF 302 B 1 
HETATM 7 S S4A CLF . . . H 3 -9.111 21.792 52.517 0.8 67.64 ? S4A CLF 302 B 1 
HETATM 8 S S3A CLF . . . H 3 -10.623 18.473 52.119 0.8 66.75 ? S3A CLF 302 B 1 
HETATM 9 FE FE5 CLF . . . H 3 -9.16 21.439 48.149 0.8 67.15 ? FE5 CLF 302 B 1 
HETATM 10 FE FE6 CLF . . . H 3 -11.497 21.785 47 0.8 66.92 ? FE6 CLF 302 B 1 
HETATM 11 FE FE7 CLF . . . H 3 -9.506 23.678 46.482 0.8 67.59 ? FE7 CLF 302 B 1 
HETATM 12 FE FE8 CLF . . . H 3 -10.865 23.3 48.938 0.8 67.7 ? FE8 CLF 302 B 1 
HETATM 13 S S2B CLF . . . H 3 -9.307 21.496 45.706 0.8 66.65 ? S2B CLF 302 B 1 
HETATM 14 S S3B CLF . . . H 3 -11.748 24.089 46.971 0.8 67.05 ? S3B CLF 302 B 1 
HETATM 15 S S4B CLF . . . H 3 -8.557 23.549 48.565 0.8 67.49 ? S4B CLF 302 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#