data_7BI7 # _model_server_result.job_id 6CVdp-uZTDiib2oFpDZnFw _model_server_result.datetime_utc '2024-10-20 00:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":304}' # _entry.id 7BI7 # _exptl.entry_id 7BI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 128.85 _cell.angle_gamma 90 _cell.entry_id 7BI7 _cell.length_a 121.87 _cell.length_b 77.64 _cell.length_c 90.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 240 A CYS 240 1_555 B SG CYS 240 B CYS 240 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 240 A CYS 240 1_555 B SG CYS 240 B CYS 240 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A SG CYS 18 A CYS 18 1_555 D FE4 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SG CYS 18 A CYS 18 1_555 D FE5 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 D FE1 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A SG CYS 38 A CYS 38 1_555 C FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 A SG CYS 42 A CYS 42 1_555 C FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 A SG CYS 45 A CYS 45 1_555 C FE2 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc7 A SG CYS 115 A CYS 115 1_555 D FE3 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 A SG CYS 260 A CYS 260 1_555 D FE7 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc9 A SG CYS 263 A CYS 263 1_555 D FE6 CLF . A CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc10 D FE2 CLF . A CLF 302 1_555 E S H2S . A H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 D FE8 CLF . A CLF 302 1_555 E S H2S . A H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc12 B SG CYS 18 B CYS 18 1_555 H FE5 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc13 B SG CYS 18 B CYS 18 1_555 H FE4 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 B NE2 HIS 31 B HIS 31 1_555 H FE1 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc15 B SG CYS 38 B CYS 38 1_555 G FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc16 B SG CYS 42 B CYS 42 1_555 G FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc17 B SG CYS 45 B CYS 45 1_555 G FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc18 B SG CYS 115 B CYS 115 1_555 H FE3 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc19 B SG CYS 260 B CYS 260 1_555 H FE7 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc20 B SG CYS 263 B CYS 263 1_555 H FE6 CLF . B CLF 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc21 H FE2 CLF . B CLF 302 1_555 I S H2S . B H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc22 H FE8 CLF . B CLF 302 1_555 I S H2S . B H2S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 263 n n C1 C3 MLI sing 264 n n C1 H11 MLI sing 265 n n C1 H12 MLI sing 266 n n C2 O6 MLI doub 267 n n C2 O7 MLI sing 268 n n C3 O8 MLI doub 269 n n C3 O9 MLI sing 270 n n # _atom_sites.entry_id 7BI7 _atom_sites.fract_transf_matrix[1][1] 0.008205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006609 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SF4 A 1 301 301 SF4 SF4 . D 3 CLF A 1 302 401 CLF CLF . E 4 H2S A 1 303 501 H2S H2S . F 5 NO3 A 1 304 601 NO3 NO3 . G 2 SF4 B 1 301 301 SF4 SF4 . H 3 CLF B 1 302 401 CLF CLF . I 4 H2S B 1 303 501 H2S H2S . J 6 MLI B 1 304 601 MLI MLI . K 7 HOH A 1 401 140 HOH HOH . K 7 HOH A 2 402 137 HOH HOH . K 7 HOH A 3 403 139 HOH HOH . K 7 HOH A 4 404 130 HOH HOH . K 7 HOH A 5 405 138 HOH HOH . K 7 HOH A 6 406 6 HOH HOH . K 7 HOH A 7 407 141 HOH HOH . K 7 HOH A 8 408 136 HOH HOH . L 7 HOH B 1 401 2 HOH HOH . L 7 HOH B 2 402 133 HOH HOH . L 7 HOH B 3 403 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . J 6 -27.947 23.893 34.466 0.5 103.08 ? C1 MLI 304 B 1 HETATM 2 C C2 MLI . . . J 6 -27.877 24.924 35.585 0.5 103.03 ? C2 MLI 304 B 1 HETATM 3 C C3 MLI . . . J 6 -28.303 22.502 34.978 0.5 103.1 ? C3 MLI 304 B 1 HETATM 4 O O6 MLI . . . J 6 -27.534 26.089 35.279 0.5 103.04 ? O6 MLI 304 B 1 HETATM 5 O O7 MLI . . . J 6 -28.158 24.558 36.747 0.5 103 ? O7 MLI 304 B 1 HETATM 6 O O8 MLI . . . J 6 -28.419 21.572 34.146 0.5 103.11 ? O8 MLI 304 B 1 HETATM 7 O O9 MLI . . . J 6 -28.483 22.362 36.206 0.5 103.13 ? O9 MLI 304 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #