data_7BIB # _model_server_result.job_id oGAkkux-rxbWN4SBF99GSg _model_server_result.datetime_utc '2024-10-19 13:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7BIB # _exptl.entry_id 7BIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.573 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-2-azanyl-5-[[(2~{R})-3-(hexylcarbamothioylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.185 _cell.angle_gamma 90 _cell.entry_id 7BIB _cell.length_a 99.638 _cell.length_b 93.222 _cell.length_c 51.524 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H30 N4 O6 S2' _chem_comp.formula_weight 450.573 _chem_comp.id TZ8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-2-azanyl-5-[[(2~{R})-3-(hexylcarbamothioylsulfanyl)-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C16 TZ8 doub 358 n n O5 C16 TZ8 sing 359 n n C16 C15 TZ8 sing 360 n n C1 C TZ8 sing 361 n n C1 C2 TZ8 sing 362 n n C15 C TZ8 sing 363 n n C15 N3 TZ8 sing 364 n n N C2 TZ8 sing 365 n n N C3 TZ8 sing 366 n n S C4 TZ8 sing 367 n n S C5 TZ8 sing 368 n n C4 C3 TZ8 sing 369 n n C2 O TZ8 doub 370 n n O1 C12 TZ8 doub 371 n n C3 C12 TZ8 sing 372 n n N1 C6 TZ8 sing 373 n n N1 C5 TZ8 sing 374 n n C6 C7 TZ8 sing 375 n n C12 N2 TZ8 sing 376 n n C5 S1 TZ8 doub 377 n n C7 C8 TZ8 sing 378 n n N2 C13 TZ8 sing 379 n n C13 C14 TZ8 sing 380 n n C8 C9 TZ8 sing 381 n n C14 O2 TZ8 doub 382 n n C14 O3 TZ8 sing 383 n n C9 C10 TZ8 sing 384 n n C11 C10 TZ8 sing 385 n n N1 H1 TZ8 sing 386 n n C7 H2 TZ8 sing 387 n n C7 H3 TZ8 sing 388 n n C8 H4 TZ8 sing 389 n n C8 H5 TZ8 sing 390 n n N2 H6 TZ8 sing 391 n n C9 H7 TZ8 sing 392 n n C9 H8 TZ8 sing 393 n n C1 H9 TZ8 sing 394 n n C1 H10 TZ8 sing 395 n n O5 H11 TZ8 sing 396 n n C6 H12 TZ8 sing 397 n n C6 H13 TZ8 sing 398 n n N3 H14 TZ8 sing 399 n n N3 H15 TZ8 sing 400 n n C4 H17 TZ8 sing 401 n n C4 H18 TZ8 sing 402 n n C3 H19 TZ8 sing 403 n n O3 H20 TZ8 sing 404 n n N H21 TZ8 sing 405 n n C H22 TZ8 sing 406 n n C H23 TZ8 sing 407 n n C10 H24 TZ8 sing 408 n n C10 H25 TZ8 sing 409 n n C11 H26 TZ8 sing 410 n n C11 H27 TZ8 sing 411 n n C11 H28 TZ8 sing 412 n n C13 H29 TZ8 sing 413 n n C13 H30 TZ8 sing 414 n n C15 H31 TZ8 sing 415 n n # _atom_sites.entry_id 7BIB _atom_sites.fract_transf_matrix[1][1] 0.010036 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000558 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TZ8 A 1 301 301 TZ8 XXX . D 2 TZ8 B 1 301 301 TZ8 XXX . E 3 HOH A 1 401 9 HOH HOH . E 3 HOH A 2 402 5 HOH HOH . E 3 HOH A 3 403 16 HOH HOH . E 3 HOH A 4 404 40 HOH HOH . E 3 HOH A 5 405 7 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 24 HOH HOH . E 3 HOH A 8 408 26 HOH HOH . E 3 HOH A 9 409 23 HOH HOH . E 3 HOH A 10 410 15 HOH HOH . E 3 HOH A 11 411 28 HOH HOH . E 3 HOH A 12 412 39 HOH HOH . E 3 HOH A 13 413 22 HOH HOH . E 3 HOH A 14 414 50 HOH HOH . E 3 HOH A 15 415 36 HOH HOH . E 3 HOH A 16 416 19 HOH HOH . E 3 HOH A 17 417 18 HOH HOH . E 3 HOH A 18 418 2 HOH HOH . E 3 HOH A 19 419 35 HOH HOH . E 3 HOH A 20 420 41 HOH HOH . E 3 HOH A 21 421 33 HOH HOH . E 3 HOH A 22 422 21 HOH HOH . F 3 HOH B 1 401 12 HOH HOH . F 3 HOH B 2 402 32 HOH HOH . F 3 HOH B 3 403 20 HOH HOH . F 3 HOH B 4 404 8 HOH HOH . F 3 HOH B 5 405 42 HOH HOH . F 3 HOH B 6 406 6 HOH HOH . F 3 HOH B 7 407 29 HOH HOH . F 3 HOH B 8 408 17 HOH HOH . F 3 HOH B 9 409 10 HOH HOH . F 3 HOH B 10 410 30 HOH HOH . F 3 HOH B 11 411 14 HOH HOH . F 3 HOH B 12 412 27 HOH HOH . F 3 HOH B 13 413 1 HOH HOH . F 3 HOH B 14 414 3 HOH HOH . F 3 HOH B 15 415 45 HOH HOH . F 3 HOH B 16 416 34 HOH HOH . F 3 HOH B 17 417 46 HOH HOH . F 3 HOH B 18 418 25 HOH HOH . F 3 HOH B 19 419 47 HOH HOH . F 3 HOH B 20 420 11 HOH HOH . F 3 HOH B 21 421 31 HOH HOH . F 3 HOH B 22 422 4 HOH HOH . F 3 HOH B 23 423 44 HOH HOH . F 3 HOH B 24 424 48 HOH HOH . F 3 HOH B 25 425 43 HOH HOH . F 3 HOH B 26 426 38 HOH HOH . F 3 HOH B 27 427 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TZ8 . . . C 2 35.86 8.67 14.713 1 66.88 ? N1 TZ8 301 A 1 HETATM 2 C C7 TZ8 . . . C 2 36.908 6.785 15.911 1 65.5 ? C7 TZ8 301 A 1 HETATM 3 C C8 TZ8 . . . C 2 36.675 7.27 17.308 1 71.79 ? C8 TZ8 301 A 1 HETATM 4 N N2 TZ8 . . . C 2 30.685 12.902 16.218 1 57.46 ? N2 TZ8 301 A 1 HETATM 5 C C9 TZ8 . . . C 2 36.313 6.192 18.318 1 72.94 ? C9 TZ8 301 A 1 HETATM 6 O O1 TZ8 . . . C 2 31.16 13.664 14.173 1 50.95 ? O1 TZ8 301 A 1 HETATM 7 C C1 TZ8 . . . C 2 28.713 9.475 12.932 1 47.26 ? C1 TZ8 301 A 1 HETATM 8 O O5 TZ8 . . . C 2 27.537 5.961 11.254 1 46.59 ? O5 TZ8 301 A 1 HETATM 9 C C5 TZ8 . . . C 2 34.858 9.556 14.984 1 65.01 ? C5 TZ8 301 A 1 HETATM 10 C C6 TZ8 . . . C 2 35.828 7.238 14.975 1 64.66 ? C6 TZ8 301 A 1 HETATM 11 N N3 TZ8 . . . C 2 26.083 6.739 13.436 1 40.7 ? N3 TZ8 301 A 1 HETATM 12 C C4 TZ8 . . . C 2 32.967 11.31 14.021 1 52.52 ? C4 TZ8 301 A 1 HETATM 13 O O4 TZ8 . . . C 2 27.66 7.99 10.725 1 45.16 ? O4 TZ8 301 A 1 HETATM 14 C C3 TZ8 . . . C 2 31.552 11.324 14.605 1 57.68 ? C3 TZ8 301 A 1 HETATM 15 O O3 TZ8 . . . C 2 29.271 15.325 18.464 1 59.4 ? O3 TZ8 301 A 1 HETATM 16 C C2 TZ8 . . . C 2 29.645 9.886 14.043 1 51.17 ? C2 TZ8 301 A 1 HETATM 17 N N TZ8 . . . C 2 30.631 10.697 13.679 1 54.72 ? N TZ8 301 A 1 HETATM 18 C C TZ8 . . . C 2 27.436 8.817 13.4 1 48.48 ? C TZ8 301 A 1 HETATM 19 O O TZ8 . . . C 2 29.524 9.476 15.182 1 50.67 ? O TZ8 301 A 1 HETATM 20 C C10 TZ8 . . . C 2 35.298 6.585 19.422 1 75.33 ? C10 TZ8 301 A 1 HETATM 21 C C11 TZ8 . . . C 2 34.03 7.316 18.949 1 69.88 ? C11 TZ8 301 A 1 HETATM 22 C C12 TZ8 . . . C 2 31.119 12.745 14.979 1 53.9 ? C12 TZ8 301 A 1 HETATM 23 C C13 TZ8 . . . C 2 30.478 14.205 16.806 1 56.09 ? C13 TZ8 301 A 1 HETATM 24 C C14 TZ8 . . . C 2 29.435 14.177 17.893 1 59.96 ? C14 TZ8 301 A 1 HETATM 25 C C15 TZ8 . . . C 2 27.334 7.352 13.001 1 49.35 ? C15 TZ8 301 A 1 HETATM 26 C C16 TZ8 . . . C 2 27.539 7.155 11.517 1 43.69 ? C16 TZ8 301 A 1 HETATM 27 O O2 TZ8 . . . C 2 28.832 13.188 18.205 1 56.48 ? O2 TZ8 301 A 1 HETATM 28 S S TZ8 . . . C 2 33.637 9.651 13.746 1 57.28 ? S TZ8 301 A 1 HETATM 29 S S1 TZ8 . . . C 2 34.822 10.516 16.303 1 70.88 ? S1 TZ8 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #