data_7BIH # _model_server_result.job_id 3CAEE7skLtHQGQ4JdoSmcA _model_server_result.datetime_utc '2024-10-10 15:18:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bih # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7BIH # _exptl.entry_id 7BIH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.08 _cell.angle_gamma 90 _cell.entry_id 7BIH _cell.length_a 54.149 _cell.length_b 101.629 _cell.length_c 91.078 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BIH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 43 A HIS 43 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc2 A OD1 ASP 45 A ASP 45 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc3 A OD2 ASP 45 A ASP 45 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc4 A OD2 ASP 47 A ASP 47 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 A OD2 ASP 94 A ASP 94 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc6 A OD1 ASP 94 A ASP 94 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc7 A NE2 HIS 115 A HIS 115 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc8 A OD2 ASP 171 A ASP 171 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 C MN MN . A MN 501 1_555 E O1 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc10 D MN MN . A MN 502 1_555 E O4 PO4 . A PO4 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc11 B ND1 HIS 43 B HIS 43 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc12 B OD1 ASP 45 B ASP 45 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc13 B OD2 ASP 45 B ASP 45 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc14 B OD2 ASP 47 B ASP 47 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc15 B OD2 ASP 94 B ASP 94 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc16 B OD1 ASP 94 B ASP 94 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc17 B NE2 HIS 115 B HIS 115 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc18 B OD2 ASP 171 B ASP 171 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc19 F MN MN . B MN 501 1_555 I O2 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc20 F MN MN . B MN 501 1_555 I O3 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc21 G MN MN . B MN 502 1_555 I O2 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc22 G MN MN . B MN 502 1_555 I O4 PO4 . B PO4 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BIH _atom_sites.fract_transf_matrix[1][1] 0.018468 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001967 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 501 4 MN MN . D 2 MN A 1 502 5 MN MN . E 3 PO4 A 1 503 2 PO4 PO4 . F 2 MN B 1 501 1 MN MN . G 2 MN B 1 502 2 MN MN . H 4 PEG B 1 503 1 PEG PEG . I 3 PO4 B 1 504 1 PO4 PO4 . J 5 HOH A 1 601 1 HOH HOH . J 5 HOH A 2 602 20 HOH HOH . J 5 HOH A 3 603 28 HOH HOH . J 5 HOH A 4 604 6 HOH HOH . J 5 HOH A 5 605 34 HOH HOH . J 5 HOH A 6 606 15 HOH HOH . J 5 HOH A 7 607 16 HOH HOH . J 5 HOH A 8 608 4 HOH HOH . J 5 HOH A 9 609 30 HOH HOH . J 5 HOH A 10 610 29 HOH HOH . J 5 HOH A 11 611 9 HOH HOH . J 5 HOH A 12 612 33 HOH HOH . J 5 HOH A 13 613 17 HOH HOH . J 5 HOH A 14 614 35 HOH HOH . J 5 HOH A 15 615 21 HOH HOH . J 5 HOH A 16 616 32 HOH HOH . K 5 HOH B 1 601 23 HOH HOH . K 5 HOH B 2 602 13 HOH HOH . K 5 HOH B 3 603 8 HOH HOH . K 5 HOH B 4 604 31 HOH HOH . K 5 HOH B 5 605 25 HOH HOH . K 5 HOH B 6 606 7 HOH HOH . K 5 HOH B 7 607 24 HOH HOH . K 5 HOH B 8 608 5 HOH HOH . K 5 HOH B 9 609 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 41.604 _atom_site.Cartn_y 51.907 _atom_site.Cartn_z 76.05 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #