data_7BIR
#
_model_server_result.job_id            htwgKQISCr-LALCvFq81yQ 
_model_server_result.datetime_utc      '2024-11-14 04:15:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bir 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    7BIR 
#
_exptl.entry_id    7BIR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              558.428 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[[(1~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-1-(4-chlorophenyl)-7-fluoranyl-3-oxidanylidene-5-(2-oxidanylpropan-2-yl)isoindol-1-yl]oxymethyl]cyclopropane-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7BIR 
_cell.length_a            71.459 
_cell.length_b            71.459 
_cell.length_c            101.201 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BIR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C28 H26 Cl2 F N3 O4' 
_chem_comp.formula_weight    558.428 
_chem_comp.id                TUZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[[(1~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-1-(4-chlorophenyl)-7-fluoranyl-3-oxidanylidene-5-(2-oxidanylpropan-2-yl)isoindol-1-yl]oxymethyl]cyclopropane-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL2 C35 TUZ sing 310 n n 
C35 C37 TUZ doub 311 n y 
C35 C34 TUZ sing 312 n y 
C37 C38 TUZ sing 313 n y 
C1 C2 TUZ sing 314 n n 
C34 C33 TUZ doub 315 n y 
C38 C32 TUZ doub 316 n y 
CL1 C15 TUZ sing 317 n n 
F30 C29 TUZ sing 318 n n 
C31 C29 TUZ doub 319 n y 
C31 C5 TUZ sing 320 n y 
C33 C32 TUZ sing 321 n y 
C2 C5 TUZ sing 322 n n 
C2 O4 TUZ sing 323 n n 
C2 C3 TUZ sing 324 n n 
C14 C15 TUZ doub 325 n y 
C14 C13 TUZ sing 326 n y 
C32 C19 TUZ sing 327 n n 
C15 C17 TUZ sing 328 n y 
C29 C28 TUZ sing 329 n y 
C5 C6 TUZ doub 330 n y 
C13 C12 TUZ doub 331 n y 
C28 C7 TUZ doub 332 n y 
C28 C19 TUZ sing 333 n n 
C6 C7 TUZ sing 334 n y 
C17 N18 TUZ doub 335 n y 
C7 C8 TUZ sing 336 n n 
C19 N10 TUZ sing 337 n n 
C19 O20 TUZ sing 338 n n 
C12 N18 TUZ sing 339 n y 
C12 C11 TUZ sing 340 n n 
C8 N10 TUZ sing 341 n n 
C8 O9 TUZ doub 342 n n 
N10 C11 TUZ sing 343 n n 
O20 C21 TUZ sing 344 n n 
C23 C22 TUZ sing 345 n n 
C23 C24 TUZ sing 346 n n 
C21 C22 TUZ sing 347 n n 
C22 C25 TUZ sing 348 n n 
C22 C24 TUZ sing 349 n n 
N27 C25 TUZ sing 350 n n 
C25 O26 TUZ doub 351 n n 
C1 H40 TUZ sing 352 n n 
C1 H39 TUZ sing 353 n n 
C1 H41 TUZ sing 354 n n 
C3 H44 TUZ sing 355 n n 
C3 H43 TUZ sing 356 n n 
C3 H42 TUZ sing 357 n n 
C6 H46 TUZ sing 358 n n 
C11 H47 TUZ sing 359 n n 
C11 H48 TUZ sing 360 n n 
C13 H49 TUZ sing 361 n n 
C14 H50 TUZ sing 362 n n 
C21 H53 TUZ sing 363 n n 
C21 H52 TUZ sing 364 n n 
C23 H55 TUZ sing 365 n n 
C23 H54 TUZ sing 366 n n 
C24 H56 TUZ sing 367 n n 
C24 H57 TUZ sing 368 n n 
C31 H60 TUZ sing 369 n n 
C37 H63 TUZ sing 370 n n 
C38 H64 TUZ sing 371 n n 
O4 H45 TUZ sing 372 n n 
C17 H51 TUZ sing 373 n n 
N27 H58 TUZ sing 374 n n 
N27 H59 TUZ sing 375 n n 
C33 H61 TUZ sing 376 n n 
C34 H62 TUZ sing 377 n n 
#
_atom_sites.entry_id                     7BIR 
_atom_sites.fract_transf_matrix[1][1]    0.013994 
_atom_sites.fract_transf_matrix[1][2]    0.008079 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016159 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009881 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 201 1 SO4 SO4 . 
C 2 SO4 A 1 202 2 SO4 SO4 . 
D 3 TUZ A 1 203 1 TUZ L01 . 
E 4 HOH A 1 301 99 HOH HOH . 
E 4 HOH A 2 302 40 HOH HOH . 
E 4 HOH A 3 303 55 HOH HOH . 
E 4 HOH A 4 304 77 HOH HOH . 
E 4 HOH A 5 305 25 HOH HOH . 
E 4 HOH A 6 306 82 HOH HOH . 
E 4 HOH A 7 307 26 HOH HOH . 
E 4 HOH A 8 308 35 HOH HOH . 
E 4 HOH A 9 309 4 HOH HOH . 
E 4 HOH A 10 310 30 HOH HOH . 
E 4 HOH A 11 311 90 HOH HOH . 
E 4 HOH A 12 312 56 HOH HOH . 
E 4 HOH A 13 313 20 HOH HOH . 
E 4 HOH A 14 314 47 HOH HOH . 
E 4 HOH A 15 315 34 HOH HOH . 
E 4 HOH A 16 316 48 HOH HOH . 
E 4 HOH A 17 317 86 HOH HOH . 
E 4 HOH A 18 318 12 HOH HOH . 
E 4 HOH A 19 319 54 HOH HOH . 
E 4 HOH A 20 320 71 HOH HOH . 
E 4 HOH A 21 321 73 HOH HOH . 
E 4 HOH A 22 322 36 HOH HOH . 
E 4 HOH A 23 323 10 HOH HOH . 
E 4 HOH A 24 324 27 HOH HOH . 
E 4 HOH A 25 325 94 HOH HOH . 
E 4 HOH A 26 326 7 HOH HOH . 
E 4 HOH A 27 327 52 HOH HOH . 
E 4 HOH A 28 328 2 HOH HOH . 
E 4 HOH A 29 329 19 HOH HOH . 
E 4 HOH A 30 330 11 HOH HOH . 
E 4 HOH A 31 331 16 HOH HOH . 
E 4 HOH A 32 332 21 HOH HOH . 
E 4 HOH A 33 333 39 HOH HOH . 
E 4 HOH A 34 334 8 HOH HOH . 
E 4 HOH A 35 335 49 HOH HOH . 
E 4 HOH A 36 336 18 HOH HOH . 
E 4 HOH A 37 337 72 HOH HOH . 
E 4 HOH A 38 338 91 HOH HOH . 
E 4 HOH A 39 339 53 HOH HOH . 
E 4 HOH A 40 340 5 HOH HOH . 
E 4 HOH A 41 341 70 HOH HOH . 
E 4 HOH A 42 342 96 HOH HOH . 
E 4 HOH A 43 343 98 HOH HOH . 
E 4 HOH A 44 344 28 HOH HOH . 
E 4 HOH A 45 345 42 HOH HOH . 
E 4 HOH A 46 346 50 HOH HOH . 
E 4 HOH A 47 347 22 HOH HOH . 
E 4 HOH A 48 348 64 HOH HOH . 
E 4 HOH A 49 349 29 HOH HOH . 
E 4 HOH A 50 350 57 HOH HOH . 
E 4 HOH A 51 351 78 HOH HOH . 
E 4 HOH A 52 352 59 HOH HOH . 
E 4 HOH A 53 353 15 HOH HOH . 
E 4 HOH A 54 354 17 HOH HOH . 
E 4 HOH A 55 355 33 HOH HOH . 
E 4 HOH A 56 356 31 HOH HOH . 
E 4 HOH A 57 357 43 HOH HOH . 
E 4 HOH A 58 358 32 HOH HOH . 
E 4 HOH A 59 359 24 HOH HOH . 
E 4 HOH A 60 360 65 HOH HOH . 
E 4 HOH A 61 361 93 HOH HOH . 
E 4 HOH A 62 362 38 HOH HOH . 
E 4 HOH A 63 363 88 HOH HOH . 
E 4 HOH A 64 364 83 HOH HOH . 
E 4 HOH A 65 365 6 HOH HOH . 
E 4 HOH A 66 366 76 HOH HOH . 
E 4 HOH A 67 367 84 HOH HOH . 
E 4 HOH A 68 368 9 HOH HOH . 
E 4 HOH A 69 369 61 HOH HOH . 
E 4 HOH A 70 370 60 HOH HOH . 
E 4 HOH A 71 371 3 HOH HOH . 
E 4 HOH A 72 372 97 HOH HOH . 
E 4 HOH A 73 373 51 HOH HOH . 
E 4 HOH A 74 374 13 HOH HOH . 
E 4 HOH A 75 375 46 HOH HOH . 
E 4 HOH A 76 376 92 HOH HOH . 
E 4 HOH A 77 377 81 HOH HOH . 
E 4 HOH A 78 378 66 HOH HOH . 
E 4 HOH A 79 379 80 HOH HOH . 
E 4 HOH A 80 380 23 HOH HOH . 
E 4 HOH A 81 381 37 HOH HOH . 
E 4 HOH A 82 382 62 HOH HOH . 
E 4 HOH A 83 383 14 HOH HOH . 
E 4 HOH A 84 384 44 HOH HOH . 
E 4 HOH A 85 385 95 HOH HOH . 
E 4 HOH A 86 386 79 HOH HOH . 
E 4 HOH A 87 387 85 HOH HOH . 
E 4 HOH A 88 388 58 HOH HOH . 
E 4 HOH A 89 389 63 HOH HOH . 
E 4 HOH A 90 390 74 HOH HOH . 
E 4 HOH A 91 391 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TUZ . . . D 3 22.789 3.533 10.737 1 39.5 ? C1 TUZ 203 A 1 
HETATM 2 C C2 TUZ . . . D 3 22.677 3.701 12.252 1 41.87 ? C2 TUZ 203 A 1 
HETATM 3 C C3 TUZ . . . D 3 21.768 2.622 12.831 1 40.65 ? C3 TUZ 203 A 1 
HETATM 4 C C5 TUZ . . . D 3 22.274 5.126 12.638 1 39.34 ? C5 TUZ 203 A 1 
HETATM 5 C C6 TUZ . . . D 3 23.152 5.94 13.357 1 35.18 ? C6 TUZ 203 A 1 
HETATM 6 C C7 TUZ . . . D 3 22.798 7.249 13.682 1 36.85 ? C7 TUZ 203 A 1 
HETATM 7 C C8 TUZ . . . D 3 23.559 8.291 14.41 1 41.88 ? C8 TUZ 203 A 1 
HETATM 8 O O9 TUZ . . . D 3 24.668 8.222 14.894 1 43.46 ? O9 TUZ 203 A 1 
HETATM 9 C C11 TUZ . . . D 3 23.194 10.66 15.026 1 35.85 ? C11 TUZ 203 A 1 
HETATM 10 C C12 TUZ . . . D 3 23.975 11.557 14.092 1 33.16 ? C12 TUZ 203 A 1 
HETATM 11 C C13 TUZ . . . D 3 24.876 11.054 13.171 1 32.4 ? C13 TUZ 203 A 1 
HETATM 12 C C14 TUZ . . . D 3 25.552 11.942 12.352 1 36.12 ? C14 TUZ 203 A 1 
HETATM 13 C C15 TUZ . . . D 3 25.315 13.292 12.494 1 37.79 ? C15 TUZ 203 A 1 
HETATM 14 N N18 TUZ . . . D 3 23.739 12.874 14.223 1 38.73 ? N18 TUZ 203 A 1 
HETATM 15 C C19 TUZ . . . D 3 21.525 9.226 13.708 1 35.18 ? C19 TUZ 203 A 1 
HETATM 16 C C21 TUZ . . . D 3 20.286 9.008 15.794 1 43.79 ? C21 TUZ 203 A 1 
HETATM 17 C C22 TUZ . . . D 3 18.813 9.159 16.15 1 48.85 ? C22 TUZ 203 A 1 
HETATM 18 C C23 TUZ . . . D 3 17.878 8.147 15.531 1 49.96 ? C23 TUZ 203 A 1 
HETATM 19 C C24 TUZ . . . D 3 18.197 8.063 16.987 1 50.34 ? C24 TUZ 203 A 1 
HETATM 20 C C25 TUZ . . . D 3 18.233 10.554 16.369 1 52.81 ? C25 TUZ 203 A 1 
HETATM 21 C C28 TUZ . . . D 3 21.575 7.77 13.309 1 33.11 ? C28 TUZ 203 A 1 
HETATM 22 C C31 TUZ . . . D 3 21.053 5.663 12.23 1 36.95 ? C31 TUZ 203 A 1 
HETATM 23 C C35 TUZ . . . D 3 21.586 11.424 9.971 1 34.86 ? C35 TUZ 203 A 1 
HETATM 24 C C37 TUZ . . . D 3 22.291 10.243 10.067 1 33.38 ? C37 TUZ 203 A 1 
HETATM 25 C C38 TUZ . . . D 3 22.284 9.546 11.266 1 31.1 ? C38 TUZ 203 A 1 
HETATM 26 O O4 TUZ . . . D 3 24.007 3.497 12.758 1 41.55 ? O4 TUZ 203 A 1 
HETATM 27 N N10 TUZ . . . D 3 22.762 9.388 14.441 1 41.07 ? N10 TUZ 203 A 1 
HETATM 28 CL CL1 TUZ . . . D 3 26.161 14.439 11.463 1 40.33 ? CL1 TUZ 203 A 1 
HETATM 29 C C17 TUZ . . . D 3 24.414 13.72 13.432 1 37.3 ? C17 TUZ 203 A 1 
HETATM 30 O O20 TUZ . . . D 3 20.399 9.642 14.506 1 38.24 ? O20 TUZ 203 A 1 
HETATM 31 O O26 TUZ . . . D 3 17.024 10.682 16.561 1 56.91 ? O26 TUZ 203 A 1 
HETATM 32 N N27 TUZ . . . D 3 19.06 11.589 16.342 1 54.6 ? N27 TUZ 203 A 1 
HETATM 33 C C29 TUZ . . . D 3 20.667 6.946 12.546 1 34.18 ? C29 TUZ 203 A 1 
HETATM 34 F F30 TUZ . . . D 3 19.47 7.385 12.135 1 40.18 ? F30 TUZ 203 A 1 
HETATM 35 C C32 TUZ . . . D 3 21.565 10.012 12.37 1 30.26 ? C32 TUZ 203 A 1 
HETATM 36 C C33 TUZ . . . D 3 20.865 11.211 12.232 1 33.32 ? C33 TUZ 203 A 1 
HETATM 37 C C34 TUZ . . . D 3 20.864 11.913 11.038 1 33.42 ? C34 TUZ 203 A 1 
HETATM 38 CL CL2 TUZ . . . D 3 21.561 12.292 8.457 1 35.03 ? CL2 TUZ 203 A 1 
HETATM 39 H H40 TUZ . . . D 3 23.54 4.196 10.312 1 39.51 ? H40 TUZ 203 A 1 
HETATM 40 H H39 TUZ . . . D 3 21.848 3.735 10.229 1 39.51 ? H39 TUZ 203 A 1 
HETATM 41 H H41 TUZ . . . D 3 23.09 2.524 10.462 1 39.49 ? H41 TUZ 203 A 1 
HETATM 42 H H44 TUZ . . . D 3 20.818 2.549 12.305 1 40.66 ? H44 TUZ 203 A 1 
HETATM 43 H H43 TUZ . . . D 3 21.525 2.791 13.879 1 40.64 ? H43 TUZ 203 A 1 
HETATM 44 H H42 TUZ . . . D 3 22.22 1.635 12.739 1 40.64 ? H42 TUZ 203 A 1 
HETATM 45 H H46 TUZ . . . D 3 24.14 5.634 13.696 1 35.17 ? H46 TUZ 203 A 1 
HETATM 46 H H47 TUZ . . . D 3 22.339 11.181 15.454 1 35.83 ? H47 TUZ 203 A 1 
HETATM 47 H H48 TUZ . . . D 3 23.851 10.462 15.871 1 35.87 ? H48 TUZ 203 A 1 
HETATM 48 H H49 TUZ . . . D 3 25.071 9.991 13.056 1 32.4 ? H49 TUZ 203 A 1 
HETATM 49 H H50 TUZ . . . D 3 26.267 11.582 11.614 1 36.11 ? H50 TUZ 203 A 1 
HETATM 50 H H53 TUZ . . . D 3 20.92 9.491 16.537 1 43.78 ? H53 TUZ 203 A 1 
HETATM 51 H H52 TUZ . . . D 3 20.561 7.954 15.803 1 43.77 ? H52 TUZ 203 A 1 
HETATM 52 H H55 TUZ . . . D 3 18.284 7.421 14.829 1 49.95 ? H55 TUZ 203 A 1 
HETATM 53 H H54 TUZ . . . D 3 16.879 8.43 15.205 1 49.95 ? H54 TUZ 203 A 1 
HETATM 54 H H56 TUZ . . . D 3 18.814 7.25 17.368 1 50.34 ? H56 TUZ 203 A 1 
HETATM 55 H H57 TUZ . . . D 3 17.443 8.309 17.735 1 50.33 ? H57 TUZ 203 A 1 
HETATM 56 H H60 TUZ . . . D 3 20.361 5.03 11.676 1 36.94 ? H60 TUZ 203 A 1 
HETATM 57 H H63 TUZ . . . D 3 22.85 9.863 9.215 1 33.38 ? H63 TUZ 203 A 1 
HETATM 58 H H64 TUZ . . . D 3 22.859 8.622 11.285 1 31.07 ? H64 TUZ 203 A 1 
HETATM 59 H H45 TUZ . . . D 3 23.96 3.556 13.745 1 41.55 ? H45 TUZ 203 A 1 
HETATM 60 H H51 TUZ . . . D 3 24.183 14.774 13.58 1 37.31 ? H51 TUZ 203 A 1 
HETATM 61 H H58 TUZ . . . D 3 20.036 11.563 16.066 1 54.6 ? H58 TUZ 203 A 1 
HETATM 62 H H59 TUZ . . . D 3 18.857 12.374 16.952 1 54.6 ? H59 TUZ 203 A 1 
HETATM 63 H H61 TUZ . . . D 3 20.281 11.633 13.048 1 33.32 ? H61 TUZ 203 A 1 
HETATM 64 H H62 TUZ . . . D 3 20.311 12.843 10.928 1 33.39 ? H62 TUZ 203 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           64 
#