data_7BIT # _model_server_result.job_id Ky6clwKh-rRlBGKADpUA2Q _model_server_result.datetime_utc '2024-10-26 02:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7BIT # _exptl.entry_id 7BIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[(1-oxidanylcyclopropyl)methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BIT _cell.length_a 71.022 _cell.length_b 71.022 _cell.length_c 101.194 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H25 Cl2 F N2 O4' _chem_comp.formula_weight 531.403 _chem_comp.id TV5 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[(1-oxidanylcyclopropyl)methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C33 TV5 sing 310 n n C33 C32 TV5 doub 311 n y C33 C35 TV5 sing 312 n y C32 C31 TV5 sing 313 n y C1 C2 TV5 sing 314 n n C35 C36 TV5 doub 315 n y C31 C30 TV5 doub 316 n y CL1 C15 TV5 sing 317 n n F28 C27 TV5 sing 318 n n C2 C5 TV5 sing 319 n n C2 O4 TV5 sing 320 n n C2 C3 TV5 sing 321 n n C29 C27 TV5 doub 322 n y C29 C5 TV5 sing 323 n y C36 C30 TV5 sing 324 n y C30 C19 TV5 sing 325 n n C14 C15 TV5 doub 326 n y C14 C13 TV5 sing 327 n y C27 C26 TV5 sing 328 n y C15 C17 TV5 sing 329 n y C5 C6 TV5 doub 330 n y C26 C7 TV5 doub 331 n y C26 C19 TV5 sing 332 n n C6 C7 TV5 sing 333 n y C13 C12 TV5 doub 334 n y C17 N18 TV5 doub 335 n y C7 C8 TV5 sing 336 n n C19 N10 TV5 sing 337 n n C19 O20 TV5 sing 338 n n C12 N18 TV5 sing 339 n y C12 C11 TV5 sing 340 n n C8 N10 TV5 sing 341 n n C8 O9 TV5 doub 342 n n N10 C11 TV5 sing 343 n n O20 C21 TV5 sing 344 n n C24 C22 TV5 sing 345 n n C24 C25 TV5 sing 346 n n C21 C22 TV5 sing 347 n n C22 O23 TV5 sing 348 n n C22 C25 TV5 sing 349 n n C1 H38 TV5 sing 350 n n C1 H37 TV5 sing 351 n n C1 H39 TV5 sing 352 n n C3 H42 TV5 sing 353 n n C3 H41 TV5 sing 354 n n C3 H40 TV5 sing 355 n n C6 H44 TV5 sing 356 n n C11 H45 TV5 sing 357 n n C11 H46 TV5 sing 358 n n C13 H47 TV5 sing 359 n n C14 H48 TV5 sing 360 n n C21 H51 TV5 sing 361 n n C21 H50 TV5 sing 362 n n C24 H54 TV5 sing 363 n n C24 H53 TV5 sing 364 n n C25 H55 TV5 sing 365 n n C25 H56 TV5 sing 366 n n C31 H58 TV5 sing 367 n n C35 H60 TV5 sing 368 n n C36 H61 TV5 sing 369 n n O4 H43 TV5 sing 370 n n C17 H49 TV5 sing 371 n n O23 H52 TV5 sing 372 n n C29 H57 TV5 sing 373 n n C32 H59 TV5 sing 374 n n # _atom_sites.entry_id 7BIT _atom_sites.fract_transf_matrix[1][1] 0.01408 _atom_sites.fract_transf_matrix[1][2] 0.008129 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 3 TV5 A 1 202 1 TV5 L01 . D 4 HOH A 1 301 8 HOH HOH . D 4 HOH A 2 302 66 HOH HOH . D 4 HOH A 3 303 59 HOH HOH . D 4 HOH A 4 304 64 HOH HOH . D 4 HOH A 5 305 46 HOH HOH . D 4 HOH A 6 306 39 HOH HOH . D 4 HOH A 7 307 48 HOH HOH . D 4 HOH A 8 308 6 HOH HOH . D 4 HOH A 9 309 44 HOH HOH . D 4 HOH A 10 310 34 HOH HOH . D 4 HOH A 11 311 19 HOH HOH . D 4 HOH A 12 312 42 HOH HOH . D 4 HOH A 13 313 30 HOH HOH . D 4 HOH A 14 314 25 HOH HOH . D 4 HOH A 15 315 17 HOH HOH . D 4 HOH A 16 316 47 HOH HOH . D 4 HOH A 17 317 52 HOH HOH . D 4 HOH A 18 318 27 HOH HOH . D 4 HOH A 19 319 56 HOH HOH . D 4 HOH A 20 320 5 HOH HOH . D 4 HOH A 21 321 22 HOH HOH . D 4 HOH A 22 322 31 HOH HOH . D 4 HOH A 23 323 16 HOH HOH . D 4 HOH A 24 324 20 HOH HOH . D 4 HOH A 25 325 11 HOH HOH . D 4 HOH A 26 326 67 HOH HOH . D 4 HOH A 27 327 29 HOH HOH . D 4 HOH A 28 328 4 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 3 HOH HOH . D 4 HOH A 31 331 21 HOH HOH . D 4 HOH A 32 332 2 HOH HOH . D 4 HOH A 33 333 41 HOH HOH . D 4 HOH A 34 334 36 HOH HOH . D 4 HOH A 35 335 58 HOH HOH . D 4 HOH A 36 336 62 HOH HOH . D 4 HOH A 37 337 9 HOH HOH . D 4 HOH A 38 338 55 HOH HOH . D 4 HOH A 39 339 37 HOH HOH . D 4 HOH A 40 340 51 HOH HOH . D 4 HOH A 41 341 28 HOH HOH . D 4 HOH A 42 342 1 HOH HOH . D 4 HOH A 43 343 7 HOH HOH . D 4 HOH A 44 344 40 HOH HOH . D 4 HOH A 45 345 65 HOH HOH . D 4 HOH A 46 346 49 HOH HOH . D 4 HOH A 47 347 38 HOH HOH . D 4 HOH A 48 348 32 HOH HOH . D 4 HOH A 49 349 61 HOH HOH . D 4 HOH A 50 350 15 HOH HOH . D 4 HOH A 51 351 43 HOH HOH . D 4 HOH A 52 352 57 HOH HOH . D 4 HOH A 53 353 23 HOH HOH . D 4 HOH A 54 354 24 HOH HOH . D 4 HOH A 55 355 68 HOH HOH . D 4 HOH A 56 356 60 HOH HOH . D 4 HOH A 57 357 12 HOH HOH . D 4 HOH A 58 358 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TV5 . . . C 3 22.486 3.343 10.738 1 49.03 ? C1 TV5 202 A 1 HETATM 2 C C2 TV5 . . . C 3 22.416 3.518 12.251 1 45.3 ? C2 TV5 202 A 1 HETATM 3 C C3 TV5 . . . C 3 21.45 2.501 12.849 1 44.66 ? C3 TV5 202 A 1 HETATM 4 C C5 TV5 . . . C 3 22.084 4.955 12.652 1 43.71 ? C5 TV5 202 A 1 HETATM 5 C C6 TV5 . . . C 3 22.99 5.72 13.386 1 41.96 ? C6 TV5 202 A 1 HETATM 6 C C7 TV5 . . . C 3 22.674 7.034 13.724 1 43.38 ? C7 TV5 202 A 1 HETATM 7 C C8 TV5 . . . C 3 23.461 8.047 14.461 1 46.33 ? C8 TV5 202 A 1 HETATM 8 O O9 TV5 . . . C 3 24.568 7.941 14.932 1 49.34 ? O9 TV5 202 A 1 HETATM 9 C C11 TV5 . . . C 3 23.14 10.422 15.12 1 45.85 ? C11 TV5 202 A 1 HETATM 10 C C12 TV5 . . . C 3 23.898 11.36 14.209 1 44.37 ? C12 TV5 202 A 1 HETATM 11 C C13 TV5 . . . C 3 24.923 10.905 13.386 1 41 ? C13 TV5 202 A 1 HETATM 12 C C14 TV5 . . . C 3 25.588 11.813 12.586 1 40.23 ? C14 TV5 202 A 1 HETATM 13 C C15 TV5 . . . C 3 25.209 13.127 12.618 1 43.31 ? C15 TV5 202 A 1 HETATM 14 N N18 TV5 . . . C 3 23.516 12.646 14.245 1 42.97 ? N18 TV5 202 A 1 HETATM 15 C C19 TV5 . . . C 3 21.428 9.038 13.803 1 47.45 ? C19 TV5 202 A 1 HETATM 16 C C21 TV5 . . . C 3 20.321 8.747 15.967 1 59.45 ? C21 TV5 202 A 1 HETATM 17 C C22 TV5 . . . C 3 18.915 8.971 16.426 1 64.71 ? C22 TV5 202 A 1 HETATM 18 C C24 TV5 . . . C 3 17.784 8.228 15.807 1 69.37 ? C24 TV5 202 A 1 HETATM 19 C C25 TV5 . . . C 3 18.23 7.91 17.215 1 67.97 ? C25 TV5 202 A 1 HETATM 20 C C26 TV5 . . . C 3 21.466 7.594 13.354 1 44.26 ? C26 TV5 202 A 1 HETATM 21 C C27 TV5 . . . C 3 20.541 6.826 12.591 1 38.89 ? C27 TV5 202 A 1 HETATM 22 C C31 TV5 . . . C 3 22.148 9.513 11.398 1 38.29 ? C31 TV5 202 A 1 HETATM 23 C C35 TV5 . . . C 3 20.639 11.824 11.284 1 45.22 ? C35 TV5 202 A 1 HETATM 24 C C36 TV5 . . . C 3 20.666 11.067 12.445 1 42.15 ? C36 TV5 202 A 1 HETATM 25 O O4 TV5 . . . C 3 23.748 3.253 12.714 1 48.2 ? O4 TV5 202 A 1 HETATM 26 N N10 TV5 . . . C 3 22.69 9.168 14.509 1 49.51 ? N10 TV5 202 A 1 HETATM 27 CL CL1 TV5 . . . C 3 26.035 14.284 11.607 1 49.95 ? CL1 TV5 202 A 1 HETATM 28 C C17 TV5 . . . C 3 24.17 13.522 13.463 1 42.67 ? C17 TV5 202 A 1 HETATM 29 O O20 TV5 . . . C 3 20.322 9.312 14.645 1 53.56 ? O20 TV5 202 A 1 HETATM 30 O O23 TV5 . . . C 3 18.667 10.335 16.818 1 64.72 ? O23 TV5 202 A 1 HETATM 31 F F28 TV5 . . . C 3 19.363 7.317 12.167 1 45.17 ? F28 TV5 202 A 1 HETATM 32 C C29 TV5 . . . C 3 20.877 5.537 12.27 1 40.1 ? C29 TV5 202 A 1 HETATM 33 C C30 TV5 . . . C 3 21.413 9.894 12.523 1 39.71 ? C30 TV5 202 A 1 HETATM 34 C C32 TV5 . . . C 3 22.12 10.26 10.234 1 39.34 ? C32 TV5 202 A 1 HETATM 35 C C33 TV5 . . . C 3 21.373 11.41 10.192 1 41.64 ? C33 TV5 202 A 1 HETATM 36 CL CL2 TV5 . . . C 3 21.334 12.353 8.719 1 44.82 ? CL2 TV5 202 A 1 HETATM 37 H H38 TV5 . . . C 3 23.123 4.097 10.278 1 49.04 ? H38 TV5 202 A 1 HETATM 38 H H37 TV5 . . . C 3 21.509 3.419 10.263 1 49.05 ? H37 TV5 202 A 1 HETATM 39 H H39 TV5 . . . C 3 22.887 2.372 10.449 1 49.02 ? H39 TV5 202 A 1 HETATM 40 H H42 TV5 . . . C 3 20.418 2.718 12.578 1 44.66 ? H42 TV5 202 A 1 HETATM 41 H H41 TV5 . . . C 3 21.496 2.491 13.937 1 44.67 ? H41 TV5 202 A 1 HETATM 42 H H40 TV5 . . . C 3 21.639 1.484 12.508 1 44.64 ? H40 TV5 202 A 1 HETATM 43 H H44 TV5 . . . C 3 23.956 5.347 13.72 1 41.96 ? H44 TV5 202 A 1 HETATM 44 H H45 TV5 . . . C 3 22.271 10.935 15.53 1 45.83 ? H45 TV5 202 A 1 HETATM 45 H H46 TV5 . . . C 3 23.782 10.201 15.971 1 45.86 ? H46 TV5 202 A 1 HETATM 46 H H47 TV5 . . . C 3 25.232 9.863 13.358 1 41.02 ? H47 TV5 202 A 1 HETATM 47 H H48 TV5 . . . C 3 26.393 11.479 11.933 1 40.24 ? H48 TV5 202 A 1 HETATM 48 H H51 TV5 . . . C 3 21.011 9.258 16.638 1 59.45 ? H51 TV5 202 A 1 HETATM 49 H H50 TV5 . . . C 3 20.568 7.687 16.007 1 59.44 ? H50 TV5 202 A 1 HETATM 50 H H54 TV5 . . . C 3 17.99 7.557 14.975 1 69.38 ? H54 TV5 202 A 1 HETATM 51 H H53 TV5 . . . C 3 16.816 8.702 15.643 1 69.38 ? H53 TV5 202 A 1 HETATM 52 H H55 TV5 . . . C 3 18.749 6.979 17.437 1 67.97 ? H55 TV5 202 A 1 HETATM 53 H H56 TV5 . . . C 3 17.6 8.171 18.064 1 67.97 ? H56 TV5 202 A 1 HETATM 54 H H58 TV5 . . . C 3 22.757 8.611 11.375 1 38.27 ? H58 TV5 202 A 1 HETATM 55 H H60 TV5 . . . C 3 20.052 12.738 11.218 1 45.22 ? H60 TV5 202 A 1 HETATM 56 H H61 TV5 . . . C 3 20.072 11.416 13.288 1 42.15 ? H61 TV5 202 A 1 HETATM 57 H H43 TV5 . . . C 3 23.919 2.285 12.569 1 48.21 ? H43 TV5 202 A 1 HETATM 58 H H49 TV5 . . . C 3 23.83 14.554 13.53 1 42.65 ? H49 TV5 202 A 1 HETATM 59 H H52 TV5 . . . C 3 17.909 10.653 16.261 1 64.72 ? H52 TV5 202 A 1 HETATM 60 H H57 TV5 . . . C 3 20.165 4.947 11.696 1 40.1 ? H57 TV5 202 A 1 HETATM 61 H H59 TV5 . . . C 3 22.694 9.949 9.364 1 39.35 ? H59 TV5 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 61 #