data_7BIV # _model_server_result.job_id Iyw8k6-ZLZEudexWVNQd5w _model_server_result.datetime_utc '2024-11-26 05:39:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7biv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 7BIV # _exptl.entry_id 7BIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 535.994 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[[(1~{R})-1-(4-chlorophenyl)-7-fluoranyl-1-[[1-(hydroxymethyl)cyclopropyl]methoxy]-3-oxidanylidene-5-(2-oxidanylpropan-2-yl)isoindol-2-yl]methyl]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BIV _cell.length_a 71.646 _cell.length_b 71.646 _cell.length_c 100.483 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H27 Cl F N3 O4' _chem_comp.formula_weight 535.994 _chem_comp.id TUW _chem_comp.mon_nstd_flag . _chem_comp.name 6-[[(1~{R})-1-(4-chlorophenyl)-7-fluoranyl-1-[[1-(hydroxymethyl)cyclopropyl]methoxy]-3-oxidanylidene-5-(2-oxidanylpropan-2-yl)isoindol-2-yl]methyl]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C33 TUW sing 328 n n C33 C35 TUW doub 329 n y C33 C32 TUW sing 330 n y C35 C36 TUW sing 331 n y C28 C26 TUW sing 332 n n C32 C31 TUW doub 333 n y C36 C30 TUW doub 334 n y N14 C13 TUW trip 335 n n F24 C23 TUW sing 336 n n C13 C12 TUW sing 337 n n C22 C23 TUW doub 338 n y C22 C21 TUW sing 339 n y C26 C21 TUW sing 340 n n C26 O29 TUW sing 341 n n C26 C27 TUW sing 342 n n C31 C30 TUW sing 343 n y C30 C6 TUW sing 344 n n C23 C25 TUW sing 345 n y C21 C20 TUW doub 346 n y C11 C12 TUW doub 347 n y C11 C10 TUW sing 348 n y C12 C15 TUW sing 349 n y C25 C6 TUW sing 350 n n C25 C19 TUW doub 351 n y C20 C19 TUW sing 352 n y C10 C9 TUW doub 353 n y C6 O5 TUW sing 354 n n C6 N7 TUW sing 355 n n C15 N16 TUW doub 356 n y C19 C17 TUW sing 357 n n O5 C4 TUW sing 358 n n C9 N16 TUW sing 359 n y C9 C8 TUW sing 360 n n N7 C17 TUW sing 361 n n N7 C8 TUW sing 362 n n C17 O18 TUW doub 363 n n C38 C3 TUW sing 364 n n C38 C37 TUW sing 365 n n C4 C3 TUW sing 366 n n C3 C1 TUW sing 367 n n C3 C37 TUW sing 368 n n C1 O2 TUW sing 369 n n C1 H39 TUW sing 370 n n C1 H40 TUW sing 371 n n C8 H44 TUW sing 372 n n C8 H45 TUW sing 373 n n C10 H46 TUW sing 374 n n C11 H47 TUW sing 375 n n C15 H48 TUW sing 376 n n C22 H50 TUW sing 377 n n C27 H51 TUW sing 378 n n C27 H53 TUW sing 379 n n C27 H52 TUW sing 380 n n C28 H54 TUW sing 381 n n C28 H56 TUW sing 382 n n C28 H55 TUW sing 383 n n C31 H58 TUW sing 384 n n C35 H60 TUW sing 385 n n C36 H61 TUW sing 386 n n C37 H62 TUW sing 387 n n C37 H63 TUW sing 388 n n C38 H65 TUW sing 389 n n C38 H64 TUW sing 390 n n O2 H43 TUW sing 391 n n C4 H41 TUW sing 392 n n C4 H42 TUW sing 393 n n C20 H49 TUW sing 394 n n O29 H57 TUW sing 395 n n C32 H59 TUW sing 396 n n # _atom_sites.entry_id 7BIV _atom_sites.fract_transf_matrix[1][1] 0.013958 _atom_sites.fract_transf_matrix[1][2] 0.008058 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 201 DMS DMS . C 2 DMS A 1 202 301 DMS DMS . D 3 EDO A 1 203 401 EDO EDO . E 4 SO4 A 1 204 1 SO4 SO4 . F 4 SO4 A 1 205 2 SO4 SO4 . G 5 TUW A 1 206 1 TUW L01 . H 6 HOH A 1 301 32 HOH HOH . H 6 HOH A 2 302 40 HOH HOH . H 6 HOH A 3 303 87 HOH HOH . H 6 HOH A 4 304 91 HOH HOH . H 6 HOH A 5 305 17 HOH HOH . H 6 HOH A 6 306 22 HOH HOH . H 6 HOH A 7 307 1 HOH HOH . H 6 HOH A 8 308 52 HOH HOH . H 6 HOH A 9 309 28 HOH HOH . H 6 HOH A 10 310 100 HOH HOH . H 6 HOH A 11 311 43 HOH HOH . H 6 HOH A 12 312 21 HOH HOH . H 6 HOH A 13 313 51 HOH HOH . H 6 HOH A 14 314 16 HOH HOH . H 6 HOH A 15 315 7 HOH HOH . H 6 HOH A 16 316 36 HOH HOH . H 6 HOH A 17 317 23 HOH HOH . H 6 HOH A 18 318 77 HOH HOH . H 6 HOH A 19 319 41 HOH HOH . H 6 HOH A 20 320 19 HOH HOH . H 6 HOH A 21 321 37 HOH HOH . H 6 HOH A 22 322 13 HOH HOH . H 6 HOH A 23 323 57 HOH HOH . H 6 HOH A 24 324 25 HOH HOH . H 6 HOH A 25 325 14 HOH HOH . H 6 HOH A 26 326 47 HOH HOH . H 6 HOH A 27 327 5 HOH HOH . H 6 HOH A 28 328 42 HOH HOH . H 6 HOH A 29 329 85 HOH HOH . H 6 HOH A 30 330 96 HOH HOH . H 6 HOH A 31 331 12 HOH HOH . H 6 HOH A 32 332 54 HOH HOH . H 6 HOH A 33 333 46 HOH HOH . H 6 HOH A 34 334 3 HOH HOH . H 6 HOH A 35 335 64 HOH HOH . H 6 HOH A 36 336 44 HOH HOH . H 6 HOH A 37 337 62 HOH HOH . H 6 HOH A 38 338 35 HOH HOH . H 6 HOH A 39 339 11 HOH HOH . H 6 HOH A 40 340 50 HOH HOH . H 6 HOH A 41 341 26 HOH HOH . H 6 HOH A 42 342 66 HOH HOH . H 6 HOH A 43 343 56 HOH HOH . H 6 HOH A 44 344 24 HOH HOH . H 6 HOH A 45 345 33 HOH HOH . H 6 HOH A 46 346 61 HOH HOH . H 6 HOH A 47 347 18 HOH HOH . H 6 HOH A 48 348 69 HOH HOH . H 6 HOH A 49 349 10 HOH HOH . H 6 HOH A 50 350 29 HOH HOH . H 6 HOH A 51 351 20 HOH HOH . H 6 HOH A 52 352 4 HOH HOH . H 6 HOH A 53 353 94 HOH HOH . H 6 HOH A 54 354 27 HOH HOH . H 6 HOH A 55 355 73 HOH HOH . H 6 HOH A 56 356 78 HOH HOH . H 6 HOH A 57 357 59 HOH HOH . H 6 HOH A 58 358 53 HOH HOH . H 6 HOH A 59 359 45 HOH HOH . H 6 HOH A 60 360 76 HOH HOH . H 6 HOH A 61 361 79 HOH HOH . H 6 HOH A 62 362 80 HOH HOH . H 6 HOH A 63 363 39 HOH HOH . H 6 HOH A 64 364 93 HOH HOH . H 6 HOH A 65 365 70 HOH HOH . H 6 HOH A 66 366 60 HOH HOH . H 6 HOH A 67 367 8 HOH HOH . H 6 HOH A 68 368 72 HOH HOH . H 6 HOH A 69 369 48 HOH HOH . H 6 HOH A 70 370 49 HOH HOH . H 6 HOH A 71 371 67 HOH HOH . H 6 HOH A 72 372 81 HOH HOH . H 6 HOH A 73 373 38 HOH HOH . H 6 HOH A 74 374 88 HOH HOH . H 6 HOH A 75 375 83 HOH HOH . H 6 HOH A 76 376 30 HOH HOH . H 6 HOH A 77 377 75 HOH HOH . H 6 HOH A 78 378 101 HOH HOH . H 6 HOH A 79 379 6 HOH HOH . H 6 HOH A 80 380 31 HOH HOH . H 6 HOH A 81 381 86 HOH HOH . H 6 HOH A 82 382 84 HOH HOH . H 6 HOH A 83 383 55 HOH HOH . H 6 HOH A 84 384 89 HOH HOH . H 6 HOH A 85 385 71 HOH HOH . H 6 HOH A 86 386 58 HOH HOH . H 6 HOH A 87 387 97 HOH HOH . H 6 HOH A 88 388 68 HOH HOH . H 6 HOH A 89 389 65 HOH HOH . H 6 HOH A 90 390 92 HOH HOH . H 6 HOH A 91 391 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TUW . . . G 5 18.441 10.653 16.311 0.94 35.12 ? C1 TUW 206 A 1 HETATM 2 C C3 TUW . . . G 5 18.579 9.155 16.071 0.94 33.22 ? C3 TUW 206 A 1 HETATM 3 C C6 TUW . . . G 5 21.41 8.872 13.74 0.94 24.28 ? C6 TUW 206 A 1 HETATM 4 C C8 TUW . . . G 5 22.979 10.282 15.159 0.94 28.03 ? C8 TUW 206 A 1 HETATM 5 C C10 TUW . . . G 5 24.814 10.723 13.479 0.94 27.11 ? C10 TUW 206 A 1 HETATM 6 C C11 TUW . . . G 5 25.553 11.624 12.734 0.94 26.38 ? C11 TUW 206 A 1 HETATM 7 C C12 TUW . . . G 5 25.343 12.979 12.884 0.94 26.44 ? C12 TUW 206 A 1 HETATM 8 C C13 TUW . . . G 5 26.113 13.927 12.113 0.94 32.06 ? C13 TUW 206 A 1 HETATM 9 C C15 TUW . . . G 5 24.341 13.383 13.767 0.94 29.96 ? C15 TUW 206 A 1 HETATM 10 C C19 TUW . . . G 5 22.672 6.895 13.79 0.94 28.16 ? C19 TUW 206 A 1 HETATM 11 C C21 TUW . . . G 5 22.256 4.827 12.64 0.94 25.77 ? C21 TUW 206 A 1 HETATM 12 C C22 TUW . . . G 5 21.075 5.389 12.151 0.94 26.2 ? C22 TUW 206 A 1 HETATM 13 C C23 TUW . . . G 5 20.68 6.657 12.474 0.94 26.69 ? C23 TUW 206 A 1 HETATM 14 C C25 TUW . . . G 5 21.492 7.427 13.316 0.94 28.01 ? C25 TUW 206 A 1 HETATM 15 C C26 TUW . . . G 5 22.706 3.428 12.221 0.94 29.9 ? C26 TUW 206 A 1 HETATM 16 C C27 TUW . . . G 5 21.802 2.323 12.754 0.94 26.57 ? C27 TUW 206 A 1 HETATM 17 C C28 TUW . . . G 5 22.842 3.311 10.702 0.94 27.67 ? C28 TUW 206 A 1 HETATM 18 C C31 TUW . . . G 5 20.891 10.965 12.307 0.94 28.3 ? C31 TUW 206 A 1 HETATM 19 C C35 TUW . . . G 5 22.404 10.003 10.195 0.94 27.48 ? C35 TUW 206 A 1 HETATM 20 C C36 TUW . . . G 5 22.302 9.274 11.379 0.94 28.48 ? C36 TUW 206 A 1 HETATM 21 C C37 TUW . . . G 5 17.853 8.244 17.009 0.94 36 ? C37 TUW 206 A 1 HETATM 22 C C38 TUW . . . G 5 17.384 8.406 15.585 0.94 32.87 ? C38 TUW 206 A 1 HETATM 23 O O2 TUW . . . G 5 19.534 11.177 17.035 0.94 41.09 ? O2 TUW 206 A 1 HETATM 24 C C4 TUW . . . G 5 19.957 8.712 15.597 0.94 30.14 ? C4 TUW 206 A 1 HETATM 25 O O5 TUW . . . G 5 20.233 9.341 14.301 0.94 28.28 ? O5 TUW 206 A 1 HETATM 26 N N7 TUW . . . G 5 22.587 9.022 14.54 0.94 29.89 ? N7 TUW 206 A 1 HETATM 27 C C9 TUW . . . G 5 23.829 11.206 14.324 0.94 30.54 ? C9 TUW 206 A 1 HETATM 28 N N14 TUW . . . G 5 26.743 14.651 11.483 0.94 34.64 ? N14 TUW 206 A 1 HETATM 29 N N16 TUW . . . G 5 23.593 12.52 14.48 0.94 31.14 ? N16 TUW 206 A 1 HETATM 30 C C17 TUW . . . G 5 23.348 7.905 14.613 0.94 31.59 ? C17 TUW 206 A 1 HETATM 31 O O18 TUW . . . G 5 24.384 7.797 15.25 0.94 33.08 ? O18 TUW 206 A 1 HETATM 32 C C20 TUW . . . G 5 23.068 5.617 13.467 0.94 24 ? C20 TUW 206 A 1 HETATM 33 F F24 TUW . . . G 5 19.515 7.129 12.003 0.94 29.26 ? F24 TUW 206 A 1 HETATM 34 O O29 TUW . . . G 5 24.038 3.27 12.744 0.94 34.09 ? O29 TUW 206 A 1 HETATM 35 C C30 TUW . . . G 5 21.554 9.741 12.458 0.94 26.55 ? C30 TUW 206 A 1 HETATM 36 C C32 TUW . . . G 5 21.004 11.709 11.132 0.94 26.83 ? C32 TUW 206 A 1 HETATM 37 C C33 TUW . . . G 5 21.776 11.212 10.097 0.94 26.29 ? C33 TUW 206 A 1 HETATM 38 CL CL1 TUW . . . G 5 21.866 12.1 8.579 0.94 27.01 ? CL1 TUW 206 A 1 HETATM 39 H H39 TUW . . . G 5 17.588 10.883 16.947 0.94 35.14 ? H39 TUW 206 A 1 HETATM 40 H H40 TUW . . . G 5 18.278 11.175 15.37 0.94 35.17 ? H40 TUW 206 A 1 HETATM 41 H H44 TUW . . . G 5 22.086 10.77 15.548 0.94 28.05 ? H44 TUW 206 A 1 HETATM 42 H H45 TUW . . . G 5 23.561 10.067 16.055 0.94 28.06 ? H45 TUW 206 A 1 HETATM 43 H H46 TUW . . . G 5 25.011 9.661 13.354 0.94 27.13 ? H46 TUW 206 A 1 HETATM 44 H H47 TUW . . . G 5 26.329 11.252 12.067 0.94 26.36 ? H47 TUW 206 A 1 HETATM 45 H H48 TUW . . . G 5 24.092 14.43 13.927 0.94 29.97 ? H48 TUW 206 A 1 HETATM 46 H H50 TUW . . . G 5 20.417 4.795 11.518 0.94 26.18 ? H50 TUW 206 A 1 HETATM 47 H H51 TUW . . . G 5 20.758 2.472 12.48 0.94 26.57 ? H51 TUW 206 A 1 HETATM 48 H H53 TUW . . . G 5 21.845 2.266 13.84 0.94 26.57 ? H53 TUW 206 A 1 HETATM 49 H H52 TUW . . . G 5 22.103 1.365 12.332 0.94 26.55 ? H52 TUW 206 A 1 HETATM 50 H H54 TUW . . . G 5 23.478 4.081 10.267 0.94 27.66 ? H54 TUW 206 A 1 HETATM 51 H H56 TUW . . . G 5 21.874 3.392 10.209 0.94 27.66 ? H56 TUW 206 A 1 HETATM 52 H H55 TUW . . . G 5 23.269 2.354 10.406 0.94 27.67 ? H55 TUW 206 A 1 HETATM 53 H H58 TUW . . . G 5 20.282 11.405 13.096 0.94 28.32 ? H58 TUW 206 A 1 HETATM 54 H H60 TUW . . . G 5 23.001 9.618 9.371 0.94 27.48 ? H60 TUW 206 A 1 HETATM 55 H H61 TUW . . . G 5 22.835 8.327 11.401 0.94 28.47 ? H61 TUW 206 A 1 HETATM 56 H H62 TUW . . . G 5 18.299 7.305 17.33 0.94 36.01 ? H62 TUW 206 A 1 HETATM 57 H H63 TUW . . . G 5 17.283 8.669 17.833 0.94 35.98 ? H63 TUW 206 A 1 HETATM 58 H H65 TUW . . . G 5 17.486 7.59 14.871 0.94 32.89 ? H65 TUW 206 A 1 HETATM 59 H H64 TUW . . . G 5 16.463 8.943 15.365 0.94 32.89 ? H64 TUW 206 A 1 HETATM 60 H H43 TUW . . . G 5 20.083 11.715 16.406 0.94 41.09 ? H43 TUW 206 A 1 HETATM 61 H H41 TUW . . . G 5 20.689 9.015 16.343 0.94 30.13 ? H41 TUW 206 A 1 HETATM 62 H H42 TUW . . . G 5 19.997 7.624 15.575 0.94 30.1 ? H42 TUW 206 A 1 HETATM 63 H H49 TUW . . . G 5 24.026 5.302 13.874 0.94 24.01 ? H49 TUW 206 A 1 HETATM 64 H H57 TUW . . . G 5 24.667 3.793 12.182 0.94 34.07 ? H57 TUW 206 A 1 HETATM 65 H H59 TUW . . . G 5 20.497 12.662 11.007 0.94 26.78 ? H59 TUW 206 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #