data_7BIX
#
_model_server_result.job_id            k8TNYvVTvT_ZEyGF0H2eDA 
_model_server_result.datetime_utc      '2024-10-12 01:27:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bix 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    7BIX 
#
_exptl.entry_id    7BIX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.39 
_cell.angle_gamma         90 
_cell.entry_id            7BIX 
_cell.length_a            197.47 
_cell.length_b            152.82 
_cell.length_c            125.11 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BIX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,AA,BA,CA,DA,EA,FA 1 1 
G,H,I,J,K,L,T,U,V,W,X,Y,Z,GA,HA,IA,JA,KA,LA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 T N N 
? 2 V N N 
? 2 X N N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 370 n n 
PA O2A UTP sing 371 n n 
PA O3A UTP sing 372 n n 
PA O5' UTP sing 373 n n 
O2A H2A UTP sing 374 n n 
O3A PB UTP sing 375 n n 
O5' C5' UTP sing 376 n n 
PB O1B UTP sing 377 n n 
PB O2B UTP doub 378 n n 
PB O3B UTP sing 379 n n 
O1B H1B UTP sing 380 n n 
O3B PG UTP sing 381 n n 
PG O1G UTP sing 382 n n 
PG O2G UTP doub 383 n n 
PG O3G UTP sing 384 n n 
O1G H1G UTP sing 385 n n 
O3G H3G UTP sing 386 n n 
C5' C4' UTP sing 387 n n 
C5' "H5'1" UTP sing 388 n n 
C5' "H5'2" UTP sing 389 n n 
C4' O4' UTP sing 390 n n 
C4' C3' UTP sing 391 n n 
C4' H4' UTP sing 392 n n 
O4' C1' UTP sing 393 n n 
C1' C2' UTP sing 394 n n 
C1' N1 UTP sing 395 n n 
C1' H1' UTP sing 396 n n 
C2' O2' UTP sing 397 n n 
C2' C3' UTP sing 398 n n 
C2' H2' UTP sing 399 n n 
O2' HA UTP sing 400 n n 
C3' O3' UTP sing 401 n n 
C3' H3' UTP sing 402 n n 
O3' HB UTP sing 403 n n 
N1 C6 UTP sing 404 n y 
N1 C2 UTP sing 405 n y 
C6 C5 UTP doub 406 n y 
C6 H6 UTP sing 407 n n 
C2 O2 UTP doub 408 n n 
C2 N3 UTP sing 409 n y 
N3 C4 UTP sing 410 n y 
N3 H3 UTP sing 411 n n 
C4 O4 UTP doub 412 n n 
C4 C5 UTP sing 413 n y 
C5 H5 UTP sing 414 n n 
#
_atom_sites.entry_id                     7BIX 
_atom_sites.fract_transf_matrix[1][1]    0.005064 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00309 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006544 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009363 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 UTP A 1 301 1 UTP UTP . 
N 3 UDP B 1 300 300 UDP UDP . 
O 2 UTP C 1 301 2 UTP UTP . 
P 3 UDP C 1 302 300 UDP UDP . 
Q 2 UTP D 1 301 5 UTP UTP . 
R 3 UDP D 1 302 263 UDP UDP . 
S 3 UDP E 1 301 263 UDP UDP . 
T 2 UTP G 1 301 4 UTP UTP . 
U 3 UDP H 1 301 263 UDP UDP . 
V 2 UTP I 1 301 3 UTP UTP . 
W 3 UDP I 1 302 263 UDP UDP . 
X 2 UTP J 1 301 6 UTP UTP . 
Y 3 UDP J 1 302 263 UDP UDP . 
Z 3 UDP K 1 301 263 UDP UDP . 
AA 4 HOH A 1 401 26 HOH HOH . 
AA 4 HOH A 2 402 22 HOH HOH . 
AA 4 HOH A 3 403 21 HOH HOH . 
BA 4 HOH B 1 401 25 HOH HOH . 
BA 4 HOH B 2 402 23 HOH HOH . 
CA 4 HOH C 1 401 31 HOH HOH . 
CA 4 HOH C 2 402 32 HOH HOH . 
CA 4 HOH C 3 403 7 HOH HOH . 
CA 4 HOH C 4 404 34 HOH HOH . 
DA 4 HOH D 1 401 15 HOH HOH . 
DA 4 HOH D 2 402 24 HOH HOH . 
DA 4 HOH D 3 403 38 HOH HOH . 
DA 4 HOH D 4 404 20 HOH HOH . 
DA 4 HOH D 5 405 37 HOH HOH . 
EA 4 HOH E 1 401 6 HOH HOH . 
EA 4 HOH E 2 402 33 HOH HOH . 
EA 4 HOH E 3 403 5 HOH HOH . 
EA 4 HOH E 4 404 36 HOH HOH . 
EA 4 HOH E 5 405 27 HOH HOH . 
FA 4 HOH F 1 301 17 HOH HOH . 
FA 4 HOH F 2 302 19 HOH HOH . 
FA 4 HOH F 3 303 18 HOH HOH . 
FA 4 HOH F 4 304 16 HOH HOH . 
FA 4 HOH F 5 305 28 HOH HOH . 
FA 4 HOH F 6 306 35 HOH HOH . 
GA 4 HOH G 1 401 44 HOH HOH . 
GA 4 HOH G 2 402 2 HOH HOH . 
GA 4 HOH G 3 403 1 HOH HOH . 
GA 4 HOH G 4 404 30 HOH HOH . 
GA 4 HOH G 5 405 3 HOH HOH . 
GA 4 HOH G 6 406 4 HOH HOH . 
HA 4 HOH H 1 401 29 HOH HOH . 
IA 4 HOH I 1 401 46 HOH HOH . 
IA 4 HOH I 2 402 8 HOH HOH . 
IA 4 HOH I 3 403 45 HOH HOH . 
IA 4 HOH I 4 404 39 HOH HOH . 
IA 4 HOH I 5 405 40 HOH HOH . 
JA 4 HOH J 1 401 4 HOH HOH . 
JA 4 HOH J 2 402 13 HOH HOH . 
JA 4 HOH J 3 403 9 HOH HOH . 
JA 4 HOH J 4 404 42 HOH HOH . 
JA 4 HOH J 5 405 43 HOH HOH . 
JA 4 HOH J 6 406 14 HOH HOH . 
JA 4 HOH J 7 407 41 HOH HOH . 
JA 4 HOH J 8 408 2 HOH HOH . 
KA 4 HOH K 1 401 47 HOH HOH . 
KA 4 HOH K 2 402 1 HOH HOH . 
KA 4 HOH K 3 403 3 HOH HOH . 
KA 4 HOH K 4 404 12 HOH HOH . 
LA 4 HOH L 1 301 8 HOH HOH . 
LA 4 HOH L 2 302 5 HOH HOH . 
LA 4 HOH L 3 303 7 HOH HOH . 
LA 4 HOH L 4 304 6 HOH HOH . 
LA 4 HOH L 5 305 10 HOH HOH . 
LA 4 HOH L 6 306 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . M 2 6.684 -46.697 21.02 1 75.85 ? PA UTP 301 A 1 
HETATM 2 O O1A UTP . . . M 2 5.83 -45.563 20.673 1 73.77 ? O1A UTP 301 A 1 
HETATM 3 O O2A UTP . . . M 2 5.809 -47.831 20.734 1 79.84 ? O2A UTP 301 A 1 
HETATM 4 O O3A UTP . . . M 2 8.063 -46.726 20.102 1 82.62 ? O3A UTP 301 A 1 
HETATM 5 O O5' UTP . . . M 2 7.097 -46.677 22.614 1 70.53 ? O5' UTP 301 A 1 
HETATM 6 P PB UTP . . . M 2 8.719 -48.058 19.369 1 85.93 ? PB UTP 301 A 1 
HETATM 7 O O1B UTP . . . M 2 9.457 -48.926 20.29 1 87.87 ? O1B UTP 301 A 1 
HETATM 8 O O2B UTP . . . M 2 7.67 -48.966 18.916 1 94.85 -1 O2B UTP 301 A 1 
HETATM 9 O O3B UTP . . . M 2 9.701 -47.602 18.126 1 91.23 ? O3B UTP 301 A 1 
HETATM 10 P PG UTP . . . M 2 9.149 -46.984 16.702 1 98.39 ? PG UTP 301 A 1 
HETATM 11 O O1G UTP . . . M 2 8.727 -45.586 16.787 1 96.01 ? O1G UTP 301 A 1 
HETATM 12 O O2G UTP . . . M 2 10.14 -47.006 15.627 1 101.54 -1 O2G UTP 301 A 1 
HETATM 13 O O3G UTP . . . M 2 7.993 -47.689 16.15 1 97.89 ? O3G UTP 301 A 1 
HETATM 14 C C5' UTP . . . M 2 8.295 -47.32 22.929 1 66.33 ? C5' UTP 301 A 1 
HETATM 15 C C4' UTP . . . M 2 8.188 -48.113 24.189 1 60.95 ? C4' UTP 301 A 1 
HETATM 16 O O4' UTP . . . M 2 6.936 -47.842 24.88 1 59.67 ? O4' UTP 301 A 1 
HETATM 17 C C1' UTP . . . M 2 6.388 -49.112 25.347 1 57.8 ? C1' UTP 301 A 1 
HETATM 18 C C2' UTP . . . M 2 6.986 -50.18 24.483 1 66.79 ? C2' UTP 301 A 1 
HETATM 19 O O2' UTP . . . M 2 7.349 -51.355 25.205 1 73.95 ? O2' UTP 301 A 1 
HETATM 20 C C3' UTP . . . M 2 8.21 -49.584 23.892 1 68.53 ? C3' UTP 301 A 1 
HETATM 21 O O3' UTP . . . M 2 9.386 -50.126 24.506 1 75.92 ? O3' UTP 301 A 1 
HETATM 22 N N1 UTP . . . M 2 4.964 -49.161 25.236 1 53.45 ? N1 UTP 301 A 1 
HETATM 23 C C6 UTP . . . M 2 4.243 -49.278 23.931 1 58.23 ? C6 UTP 301 A 1 
HETATM 24 C C2 UTP . . . M 2 4.207 -49.101 26.472 1 47.82 ? C2 UTP 301 A 1 
HETATM 25 O O2 UTP . . . M 2 4.78 -49.008 27.506 1 38.49 ? O2 UTP 301 A 1 
HETATM 26 N N3 UTP . . . M 2 2.789 -49.148 26.447 1 54.4 ? N3 UTP 301 A 1 
HETATM 27 C C4 UTP . . . M 2 2.108 -49.261 25.208 1 55.1 ? C4 UTP 301 A 1 
HETATM 28 O O4 UTP . . . M 2 0.926 -49.302 25.19 1 55.39 ? O4 UTP 301 A 1 
HETATM 29 C C5 UTP . . . M 2 2.893 -49.328 23.901 1 57.98 ? C5 UTP 301 A 1 
HETATM 30 H "H5'1" UTP . . . M 2 8.531 -47.917 22.202 1 79.78 ? "H5'1" UTP 301 A 1 
HETATM 31 H "H5'2" UTP . . . M 2 8.99 -46.652 23.036 1 79.78 ? "H5'2" UTP 301 A 1 
HETATM 32 H H4' UTP . . . M 2 8.935 -47.873 24.76 1 73.32 ? H4' UTP 301 A 1 
HETATM 33 H H1' UTP . . . M 2 6.632 -49.229 26.279 1 69.54 ? H1' UTP 301 A 1 
HETATM 34 H H2' UTP . . . M 2 6.33 -50.43 23.814 1 80.33 ? H2' UTP 301 A 1 
HETATM 35 H HA UTP . . . M 2 7.553 -51.973 24.658 1 88.91 ? HA UTP 301 A 1 
HETATM 36 H H3' UTP . . . M 2 8.202 -49.758 22.938 1 82.41 ? H3' UTP 301 A 1 
HETATM 37 H HB UTP . . . M 2 9.992 -49.53 24.533 1 91.28 ? HB UTP 301 A 1 
HETATM 38 H H6 UTP . . . M 2 4.726 -49.316 23.137 1 70.05 ? H6 UTP 301 A 1 
HETATM 39 H H3 UTP . . . M 2 2.343 -49.109 27.181 1 65.45 ? H3 UTP 301 A 1 
HETATM 40 H H5 UTP . . . M 2 2.445 -49.402 23.089 1 69.75 ? H5 UTP 301 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#