data_7BJ0 # _model_server_result.job_id niTGagdluYAIYbrkqkmLMQ _model_server_result.datetime_utc '2024-11-02 19:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7BJ0 # _exptl.entry_id 7BJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-4-chloranyl-3-(4-chlorophenyl)-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-2-[(4-nitrophenyl)methyl]isoindol-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BJ0 _cell.length_a 96.538 _cell.length_b 96.538 _cell.length_c 72.984 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H22 Cl2 N2 O5' _chem_comp.formula_weight 513.369 _chem_comp.id TVH _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-4-chloranyl-3-(4-chlorophenyl)-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-2-[(4-nitrophenyl)methyl]isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 TVH doub 306 n y C22 C21 TVH sing 307 n y C23 C24 TVH sing 308 n y C21 C20 TVH doub 309 n y C34 C35 TVH sing 310 n n C34 C3 TVH sing 311 n n C24 CL1 TVH sing 312 n n C24 C26 TVH doub 313 n y C20 C26 TVH sing 314 n y C20 C18 TVH sing 315 n n C26 C6 TVH sing 316 n n C4 C3 TVH sing 317 n n C4 O5 TVH sing 318 n n C35 C3 TVH sing 319 n n C3 C2 TVH sing 320 n n O19 C18 TVH doub 321 n n C18 N7 TVH sing 322 n n O5 C6 TVH sing 323 n n C2 O1 TVH sing 324 n n C6 N7 TVH sing 325 n n C6 C27 TVH sing 326 n n N7 C8 TVH sing 327 n n C8 C9 TVH sing 328 n n C27 C33 TVH doub 329 n y C27 C28 TVH sing 330 n y C33 C32 TVH sing 331 n y C9 C14 TVH doub 332 n y C9 C10 TVH sing 333 n y C14 C13 TVH sing 334 n y C28 C29 TVH doub 335 n y C32 C30 TVH doub 336 n y C10 C11 TVH doub 337 n y C13 C12 TVH doub 338 n y C29 C30 TVH sing 339 n y C30 CL2 TVH sing 340 n n C11 C12 TVH sing 341 n y C12 N15 TVH sing 342 n n N15 O17 TVH doub 343 n n N15 O16 TVH sing 344 n n C2 H38 TVH sing 345 n n C2 H37 TVH sing 346 n n C8 H41 TVH sing 347 n n C8 H42 TVH sing 348 n n C10 H43 TVH sing 349 n n C11 H44 TVH sing 350 n n C13 H45 TVH sing 351 n n C14 H46 TVH sing 352 n n C21 H47 TVH sing 353 n n C22 H48 TVH sing 354 n n C23 H49 TVH sing 355 n n C28 H50 TVH sing 356 n n C35 H57 TVH sing 357 n n C35 H56 TVH sing 358 n n O1 H36 TVH sing 359 n n C4 H39 TVH sing 360 n n C4 H40 TVH sing 361 n n C29 H51 TVH sing 362 n n C32 H52 TVH sing 363 n n C33 H53 TVH sing 364 n n C34 H54 TVH sing 365 n n C34 H55 TVH sing 366 n n # _atom_sites.entry_id 7BJ0 _atom_sites.fract_transf_matrix[1][1] 0.010359 _atom_sites.fract_transf_matrix[1][2] 0.005981 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TVH A 1 201 1 TVH L01 . D 2 TVH B 1 201 1 TVH L02 . E 3 HOH A 1 301 38 HOH HOH . E 3 HOH A 2 302 303 HOH HOH . E 3 HOH A 3 303 30 HOH HOH . E 3 HOH A 4 304 25 HOH HOH . E 3 HOH A 5 305 15 HOH HOH . E 3 HOH A 6 306 301 HOH HOH . E 3 HOH A 7 307 296 HOH HOH . E 3 HOH A 8 308 87 HOH HOH . E 3 HOH A 9 309 76 HOH HOH . E 3 HOH A 10 310 115 HOH HOH . E 3 HOH A 11 311 92 HOH HOH . E 3 HOH A 12 312 6 HOH HOH . E 3 HOH A 13 313 27 HOH HOH . E 3 HOH A 14 314 328 HOH HOH . E 3 HOH A 15 315 108 HOH HOH . E 3 HOH A 16 316 20 HOH HOH . E 3 HOH A 17 317 84 HOH HOH . E 3 HOH A 18 318 101 HOH HOH . E 3 HOH A 19 319 307 HOH HOH . E 3 HOH A 20 320 91 HOH HOH . E 3 HOH A 21 321 4 HOH HOH . E 3 HOH A 22 322 19 HOH HOH . E 3 HOH A 23 323 12 HOH HOH . E 3 HOH A 24 324 62 HOH HOH . E 3 HOH A 25 325 77 HOH HOH . E 3 HOH A 26 326 48 HOH HOH . E 3 HOH A 27 327 21 HOH HOH . E 3 HOH A 28 328 7 HOH HOH . E 3 HOH A 29 329 25 HOH HOH . E 3 HOH A 30 330 47 HOH HOH . E 3 HOH A 31 331 23 HOH HOH . E 3 HOH A 32 332 44 HOH HOH . E 3 HOH A 33 333 69 HOH HOH . E 3 HOH A 34 334 94 HOH HOH . E 3 HOH A 35 335 316 HOH HOH . E 3 HOH A 36 336 75 HOH HOH . E 3 HOH A 37 337 31 HOH HOH . E 3 HOH A 38 338 3 HOH HOH . E 3 HOH A 39 339 80 HOH HOH . E 3 HOH A 40 340 131 HOH HOH . E 3 HOH A 41 341 314 HOH HOH . E 3 HOH A 42 342 28 HOH HOH . E 3 HOH A 43 343 24 HOH HOH . E 3 HOH A 44 344 308 HOH HOH . E 3 HOH A 45 345 49 HOH HOH . E 3 HOH A 46 346 16 HOH HOH . E 3 HOH A 47 347 14 HOH HOH . E 3 HOH A 48 348 29 HOH HOH . E 3 HOH A 49 349 74 HOH HOH . E 3 HOH A 50 350 103 HOH HOH . E 3 HOH A 51 351 310 HOH HOH . E 3 HOH A 52 352 60 HOH HOH . E 3 HOH A 53 353 84 HOH HOH . E 3 HOH A 54 354 135 HOH HOH . E 3 HOH A 55 355 23 HOH HOH . E 3 HOH A 56 356 77 HOH HOH . E 3 HOH A 57 357 112 HOH HOH . E 3 HOH A 58 358 147 HOH HOH . E 3 HOH A 59 359 42 HOH HOH . E 3 HOH A 60 360 50 HOH HOH . E 3 HOH A 61 361 59 HOH HOH . E 3 HOH A 62 362 41 HOH HOH . E 3 HOH A 63 363 238 HOH HOH . E 3 HOH A 64 364 36 HOH HOH . E 3 HOH A 65 365 61 HOH HOH . E 3 HOH A 66 366 225 HOH HOH . E 3 HOH A 67 367 283 HOH HOH . E 3 HOH A 68 368 324 HOH HOH . F 3 HOH B 1 301 317 HOH HOH . F 3 HOH B 2 302 14 HOH HOH . F 3 HOH B 3 303 66 HOH HOH . F 3 HOH B 4 304 164 HOH HOH . F 3 HOH B 5 305 40 HOH HOH . F 3 HOH B 6 306 80 HOH HOH . F 3 HOH B 7 307 298 HOH HOH . F 3 HOH B 8 308 67 HOH HOH . F 3 HOH B 9 309 294 HOH HOH . F 3 HOH B 10 310 55 HOH HOH . F 3 HOH B 11 311 157 HOH HOH . F 3 HOH B 12 312 26 HOH HOH . F 3 HOH B 13 313 48 HOH HOH . F 3 HOH B 14 314 11 HOH HOH . F 3 HOH B 15 315 299 HOH HOH . F 3 HOH B 16 316 37 HOH HOH . F 3 HOH B 17 317 31 HOH HOH . F 3 HOH B 18 318 78 HOH HOH . F 3 HOH B 19 319 18 HOH HOH . F 3 HOH B 20 320 2 HOH HOH . F 3 HOH B 21 321 13 HOH HOH . F 3 HOH B 22 322 33 HOH HOH . F 3 HOH B 23 323 42 HOH HOH . F 3 HOH B 24 324 309 HOH HOH . F 3 HOH B 25 325 302 HOH HOH . F 3 HOH B 26 326 7 HOH HOH . F 3 HOH B 27 327 11 HOH HOH . F 3 HOH B 28 328 64 HOH HOH . F 3 HOH B 29 329 304 HOH HOH . F 3 HOH B 30 330 21 HOH HOH . F 3 HOH B 31 331 28 HOH HOH . F 3 HOH B 32 332 57 HOH HOH . F 3 HOH B 33 333 107 HOH HOH . F 3 HOH B 34 334 321 HOH HOH . F 3 HOH B 35 335 99 HOH HOH . F 3 HOH B 36 336 305 HOH HOH . F 3 HOH B 37 337 18 HOH HOH . F 3 HOH B 38 338 4 HOH HOH . F 3 HOH B 39 339 114 HOH HOH . F 3 HOH B 40 340 93 HOH HOH . F 3 HOH B 41 341 72 HOH HOH . F 3 HOH B 42 342 41 HOH HOH . F 3 HOH B 43 343 68 HOH HOH . F 3 HOH B 44 344 10 HOH HOH . F 3 HOH B 45 345 120 HOH HOH . F 3 HOH B 46 346 33 HOH HOH . F 3 HOH B 47 347 300 HOH HOH . F 3 HOH B 48 348 326 HOH HOH . F 3 HOH B 49 349 8 HOH HOH . F 3 HOH B 50 350 148 HOH HOH . F 3 HOH B 51 351 325 HOH HOH . F 3 HOH B 52 352 56 HOH HOH . F 3 HOH B 53 353 36 HOH HOH . F 3 HOH B 54 354 327 HOH HOH . F 3 HOH B 55 355 292 HOH HOH . F 3 HOH B 56 356 132 HOH HOH . F 3 HOH B 57 357 16 HOH HOH . F 3 HOH B 58 358 293 HOH HOH . F 3 HOH B 59 359 322 HOH HOH . F 3 HOH B 60 360 1 HOH HOH . F 3 HOH B 61 361 63 HOH HOH . F 3 HOH B 62 362 127 HOH HOH . F 3 HOH B 63 363 26 HOH HOH . F 3 HOH B 64 364 130 HOH HOH . F 3 HOH B 65 365 295 HOH HOH . F 3 HOH B 66 366 297 HOH HOH . F 3 HOH B 67 367 27 HOH HOH . F 3 HOH B 68 368 224 HOH HOH . F 3 HOH B 69 369 311 HOH HOH . F 3 HOH B 70 370 38 HOH HOH . F 3 HOH B 71 371 32 HOH HOH . F 3 HOH B 72 372 291 HOH HOH . F 3 HOH B 73 373 320 HOH HOH . F 3 HOH B 74 374 43 HOH HOH . F 3 HOH B 75 375 106 HOH HOH . F 3 HOH B 76 376 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 TVH . . . C 2 -35.871 17.116 -4.537 1 55.57 ? C2 TVH 201 A 1 HETATM 2 C C3 TVH . . . C 2 -36.025 15.993 -5.534 1 51.55 ? C3 TVH 201 A 1 HETATM 3 C C6 TVH . . . C 2 -39.151 14.287 -4.452 1 45.57 ? C6 TVH 201 A 1 HETATM 4 C C8 TVH . . . C 2 -39.844 16.547 -3.423 1 49.7 ? C8 TVH 201 A 1 HETATM 5 C C10 TVH . . . C 2 -40.476 17.311 -1.126 1 54.45 ? C10 TVH 201 A 1 HETATM 6 C C11 TVH . . . C 2 -41.269 17.251 -0.001 1 56.63 ? C11 TVH 201 A 1 HETATM 7 C C12 TVH . . . C 2 -42.304 16.35 0.041 1 61.88 ? C12 TVH 201 A 1 HETATM 8 C C13 TVH . . . C 2 -42.568 15.507 -1.008 1 41.82 ? C13 TVH 201 A 1 HETATM 9 C C14 TVH . . . C 2 -41.773 15.567 -2.134 1 54.12 ? C14 TVH 201 A 1 HETATM 10 O O17 TVH . . . C 2 -43.612 15.205 1.561 1 91.57 -1 O17 TVH 201 A 1 HETATM 11 C C21 TVH . . . C 2 -41.225 14.041 -7.48 1 46.71 ? C21 TVH 201 A 1 HETATM 12 C C22 TVH . . . C 2 -40.764 12.916 -8.158 1 47.96 ? C22 TVH 201 A 1 HETATM 13 C C23 TVH . . . C 2 -39.725 12.18 -7.626 1 43.02 ? C23 TVH 201 A 1 HETATM 14 C C24 TVH . . . C 2 -39.152 12.569 -6.422 1 42.25 ? C24 TVH 201 A 1 HETATM 15 C C26 TVH . . . C 2 -39.603 13.677 -5.75 1 37.69 ? C26 TVH 201 A 1 HETATM 16 C C27 TVH . . . C 2 -39.345 13.404 -3.226 1 43.05 ? C27 TVH 201 A 1 HETATM 17 C C28 TVH . . . C 2 -38.55 13.592 -2.108 1 36.97 ? C28 TVH 201 A 1 HETATM 18 C C35 TVH . . . C 2 -34.881 15.039 -5.676 1 52.98 ? C35 TVH 201 A 1 HETATM 19 O O1 TVH . . . C 2 -35.413 16.623 -3.291 1 63.93 ? O1 TVH 201 A 1 HETATM 20 C C4 TVH . . . C 2 -37.416 15.429 -5.709 1 44.23 ? C4 TVH 201 A 1 HETATM 21 O O5 TVH . . . C 2 -37.774 14.666 -4.55 1 46.95 ? O5 TVH 201 A 1 HETATM 22 N N7 TVH . . . C 2 -40.047 15.447 -4.357 1 55.96 ? N7 TVH 201 A 1 HETATM 23 C C9 TVH . . . C 2 -40.718 16.471 -2.203 1 52.39 ? C9 TVH 201 A 1 HETATM 24 N N15 TVH . . . C 2 -43.146 16.288 1.238 1 76.46 1 N15 TVH 201 A 1 HETATM 25 O O16 TVH . . . C 2 -43.253 17.295 1.919 1 76.27 ? O16 TVH 201 A 1 HETATM 26 C C18 TVH . . . C 2 -40.933 15.536 -5.381 1 48.41 ? C18 TVH 201 A 1 HETATM 27 O O19 TVH . . . C 2 -41.792 16.4 -5.497 1 49.97 ? O19 TVH 201 A 1 HETATM 28 C C20 TVH . . . C 2 -40.637 14.407 -6.281 1 42.95 ? C20 TVH 201 A 1 HETATM 29 CL CL1 TVH . . . C 2 -37.853 11.644 -5.763 1 48.92 ? CL1 TVH 201 A 1 HETATM 30 C C29 TVH . . . C 2 -38.712 12.801 -0.99 1 43.66 ? C29 TVH 201 A 1 HETATM 31 C C30 TVH . . . C 2 -39.673 11.817 -0.986 1 39.1 ? C30 TVH 201 A 1 HETATM 32 CL CL2 TVH . . . C 2 -39.872 10.825 0.428 1 43.81 ? CL2 TVH 201 A 1 HETATM 33 C C32 TVH . . . C 2 -40.471 11.61 -2.072 1 40.13 ? C32 TVH 201 A 1 HETATM 34 C C33 TVH . . . C 2 -40.311 12.401 -3.197 1 48.94 ? C33 TVH 201 A 1 HETATM 35 C C34 TVH . . . C 2 -35.156 16.042 -6.753 1 55.08 ? C34 TVH 201 A 1 HETATM 36 H H38 TVH . . . C 2 -36.737 17.565 -4.413 1 56.08 ? H38 TVH 201 A 1 HETATM 37 H H37 TVH . . . C 2 -35.23 17.772 -4.882 1 56.25 ? H37 TVH 201 A 1 HETATM 38 H H41 TVH . . . C 2 -40.022 17.395 -3.889 1 51.51 ? H41 TVH 201 A 1 HETATM 39 H H42 TVH . . . C 2 -38.902 16.551 -3.139 1 51.46 ? H42 TVH 201 A 1 HETATM 40 H H43 TVH . . . C 2 -39.754 17.934 -1.165 1 54.53 ? H43 TVH 201 A 1 HETATM 41 H H44 TVH . . . C 2 -41.102 17.83 0.739 1 55.57 ? H44 TVH 201 A 1 HETATM 42 H H45 TVH . . . C 2 -43.292 14.887 -0.96 1 51 ? H45 TVH 201 A 1 HETATM 43 H H46 TVH . . . C 2 -41.949 14.984 -2.869 1 52.8 ? H46 TVH 201 A 1 HETATM 44 H H47 TVH . . . C 2 -41.944 14.557 -7.839 1 45.52 ? H47 TVH 201 A 1 HETATM 45 H H48 TVH . . . C 2 -41.164 12.657 -8.985 1 45.68 ? H48 TVH 201 A 1 HETATM 46 H H49 TVH . . . C 2 -39.4 11.407 -8.083 1 44.27 ? H49 TVH 201 A 1 HETATM 47 H H50 TVH . . . C 2 -37.883 14.275 -2.112 1 40.47 ? H50 TVH 201 A 1 HETATM 48 H H57 TVH . . . C 2 -34.099 15.182 -5.107 1 52.64 ? H57 TVH 201 A 1 HETATM 49 H H56 TVH . . . C 2 -35.092 14.102 -5.859 1 52.56 ? H56 TVH 201 A 1 HETATM 50 H H36 TVH . . . C 2 -35.328 15.783 -3.344 0 72.67 ? H36 TVH 201 A 1 HETATM 51 H H39 TVH . . . C 2 -37.442 14.855 -6.507 1 46.39 ? H39 TVH 201 A 1 HETATM 52 H H40 TVH . . . C 2 -38.058 16.164 -5.837 1 46.46 ? H40 TVH 201 A 1 HETATM 53 H H51 TVH . . . C 2 -38.161 12.936 -0.222 1 41.52 ? H51 TVH 201 A 1 HETATM 54 H H52 TVH . . . C 2 -41.134 10.923 -2.056 1 41.58 ? H52 TVH 201 A 1 HETATM 55 H H53 TVH . . . C 2 -40.868 12.258 -3.959 1 43.82 ? H53 TVH 201 A 1 HETATM 56 H H54 TVH . . . C 2 -35.535 15.716 -7.594 1 53.73 ? H54 TVH 201 A 1 HETATM 57 H H55 TVH . . . C 2 -34.542 16.798 -6.843 1 53.84 ? H55 TVH 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 57 #