data_7BJ0 # _model_server_result.job_id DJptw4Y-eCyb3PKIg_SzCQ _model_server_result.datetime_utc '2024-11-02 19:40:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7BJ0 # _exptl.entry_id 7BJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-4-chloranyl-3-(4-chlorophenyl)-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-2-[(4-nitrophenyl)methyl]isoindol-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BJ0 _cell.length_a 96.538 _cell.length_b 96.538 _cell.length_c 72.984 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H22 Cl2 N2 O5' _chem_comp.formula_weight 513.369 _chem_comp.id TVH _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-4-chloranyl-3-(4-chlorophenyl)-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-2-[(4-nitrophenyl)methyl]isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 TVH doub 306 n y C22 C21 TVH sing 307 n y C23 C24 TVH sing 308 n y C21 C20 TVH doub 309 n y C34 C35 TVH sing 310 n n C34 C3 TVH sing 311 n n C24 CL1 TVH sing 312 n n C24 C26 TVH doub 313 n y C20 C26 TVH sing 314 n y C20 C18 TVH sing 315 n n C26 C6 TVH sing 316 n n C4 C3 TVH sing 317 n n C4 O5 TVH sing 318 n n C35 C3 TVH sing 319 n n C3 C2 TVH sing 320 n n O19 C18 TVH doub 321 n n C18 N7 TVH sing 322 n n O5 C6 TVH sing 323 n n C2 O1 TVH sing 324 n n C6 N7 TVH sing 325 n n C6 C27 TVH sing 326 n n N7 C8 TVH sing 327 n n C8 C9 TVH sing 328 n n C27 C33 TVH doub 329 n y C27 C28 TVH sing 330 n y C33 C32 TVH sing 331 n y C9 C14 TVH doub 332 n y C9 C10 TVH sing 333 n y C14 C13 TVH sing 334 n y C28 C29 TVH doub 335 n y C32 C30 TVH doub 336 n y C10 C11 TVH doub 337 n y C13 C12 TVH doub 338 n y C29 C30 TVH sing 339 n y C30 CL2 TVH sing 340 n n C11 C12 TVH sing 341 n y C12 N15 TVH sing 342 n n N15 O17 TVH doub 343 n n N15 O16 TVH sing 344 n n C2 H38 TVH sing 345 n n C2 H37 TVH sing 346 n n C8 H41 TVH sing 347 n n C8 H42 TVH sing 348 n n C10 H43 TVH sing 349 n n C11 H44 TVH sing 350 n n C13 H45 TVH sing 351 n n C14 H46 TVH sing 352 n n C21 H47 TVH sing 353 n n C22 H48 TVH sing 354 n n C23 H49 TVH sing 355 n n C28 H50 TVH sing 356 n n C35 H57 TVH sing 357 n n C35 H56 TVH sing 358 n n O1 H36 TVH sing 359 n n C4 H39 TVH sing 360 n n C4 H40 TVH sing 361 n n C29 H51 TVH sing 362 n n C32 H52 TVH sing 363 n n C33 H53 TVH sing 364 n n C34 H54 TVH sing 365 n n C34 H55 TVH sing 366 n n # _atom_sites.entry_id 7BJ0 _atom_sites.fract_transf_matrix[1][1] 0.010359 _atom_sites.fract_transf_matrix[1][2] 0.005981 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TVH A 1 201 1 TVH L01 . D 2 TVH B 1 201 1 TVH L02 . E 3 HOH A 1 301 38 HOH HOH . E 3 HOH A 2 302 303 HOH HOH . E 3 HOH A 3 303 30 HOH HOH . E 3 HOH A 4 304 25 HOH HOH . E 3 HOH A 5 305 15 HOH HOH . E 3 HOH A 6 306 301 HOH HOH . E 3 HOH A 7 307 296 HOH HOH . E 3 HOH A 8 308 87 HOH HOH . E 3 HOH A 9 309 76 HOH HOH . E 3 HOH A 10 310 115 HOH HOH . E 3 HOH A 11 311 92 HOH HOH . E 3 HOH A 12 312 6 HOH HOH . E 3 HOH A 13 313 27 HOH HOH . E 3 HOH A 14 314 328 HOH HOH . E 3 HOH A 15 315 108 HOH HOH . E 3 HOH A 16 316 20 HOH HOH . E 3 HOH A 17 317 84 HOH HOH . E 3 HOH A 18 318 101 HOH HOH . E 3 HOH A 19 319 307 HOH HOH . E 3 HOH A 20 320 91 HOH HOH . E 3 HOH A 21 321 4 HOH HOH . E 3 HOH A 22 322 19 HOH HOH . E 3 HOH A 23 323 12 HOH HOH . E 3 HOH A 24 324 62 HOH HOH . E 3 HOH A 25 325 77 HOH HOH . E 3 HOH A 26 326 48 HOH HOH . E 3 HOH A 27 327 21 HOH HOH . E 3 HOH A 28 328 7 HOH HOH . E 3 HOH A 29 329 25 HOH HOH . E 3 HOH A 30 330 47 HOH HOH . E 3 HOH A 31 331 23 HOH HOH . E 3 HOH A 32 332 44 HOH HOH . E 3 HOH A 33 333 69 HOH HOH . E 3 HOH A 34 334 94 HOH HOH . E 3 HOH A 35 335 316 HOH HOH . E 3 HOH A 36 336 75 HOH HOH . E 3 HOH A 37 337 31 HOH HOH . E 3 HOH A 38 338 3 HOH HOH . E 3 HOH A 39 339 80 HOH HOH . E 3 HOH A 40 340 131 HOH HOH . E 3 HOH A 41 341 314 HOH HOH . E 3 HOH A 42 342 28 HOH HOH . E 3 HOH A 43 343 24 HOH HOH . E 3 HOH A 44 344 308 HOH HOH . E 3 HOH A 45 345 49 HOH HOH . E 3 HOH A 46 346 16 HOH HOH . E 3 HOH A 47 347 14 HOH HOH . E 3 HOH A 48 348 29 HOH HOH . E 3 HOH A 49 349 74 HOH HOH . E 3 HOH A 50 350 103 HOH HOH . E 3 HOH A 51 351 310 HOH HOH . E 3 HOH A 52 352 60 HOH HOH . E 3 HOH A 53 353 84 HOH HOH . E 3 HOH A 54 354 135 HOH HOH . E 3 HOH A 55 355 23 HOH HOH . E 3 HOH A 56 356 77 HOH HOH . E 3 HOH A 57 357 112 HOH HOH . E 3 HOH A 58 358 147 HOH HOH . E 3 HOH A 59 359 42 HOH HOH . E 3 HOH A 60 360 50 HOH HOH . E 3 HOH A 61 361 59 HOH HOH . E 3 HOH A 62 362 41 HOH HOH . E 3 HOH A 63 363 238 HOH HOH . E 3 HOH A 64 364 36 HOH HOH . E 3 HOH A 65 365 61 HOH HOH . E 3 HOH A 66 366 225 HOH HOH . E 3 HOH A 67 367 283 HOH HOH . E 3 HOH A 68 368 324 HOH HOH . F 3 HOH B 1 301 317 HOH HOH . F 3 HOH B 2 302 14 HOH HOH . F 3 HOH B 3 303 66 HOH HOH . F 3 HOH B 4 304 164 HOH HOH . F 3 HOH B 5 305 40 HOH HOH . F 3 HOH B 6 306 80 HOH HOH . F 3 HOH B 7 307 298 HOH HOH . F 3 HOH B 8 308 67 HOH HOH . F 3 HOH B 9 309 294 HOH HOH . F 3 HOH B 10 310 55 HOH HOH . F 3 HOH B 11 311 157 HOH HOH . F 3 HOH B 12 312 26 HOH HOH . F 3 HOH B 13 313 48 HOH HOH . F 3 HOH B 14 314 11 HOH HOH . F 3 HOH B 15 315 299 HOH HOH . F 3 HOH B 16 316 37 HOH HOH . F 3 HOH B 17 317 31 HOH HOH . F 3 HOH B 18 318 78 HOH HOH . F 3 HOH B 19 319 18 HOH HOH . F 3 HOH B 20 320 2 HOH HOH . F 3 HOH B 21 321 13 HOH HOH . F 3 HOH B 22 322 33 HOH HOH . F 3 HOH B 23 323 42 HOH HOH . F 3 HOH B 24 324 309 HOH HOH . F 3 HOH B 25 325 302 HOH HOH . F 3 HOH B 26 326 7 HOH HOH . F 3 HOH B 27 327 11 HOH HOH . F 3 HOH B 28 328 64 HOH HOH . F 3 HOH B 29 329 304 HOH HOH . F 3 HOH B 30 330 21 HOH HOH . F 3 HOH B 31 331 28 HOH HOH . F 3 HOH B 32 332 57 HOH HOH . F 3 HOH B 33 333 107 HOH HOH . F 3 HOH B 34 334 321 HOH HOH . F 3 HOH B 35 335 99 HOH HOH . F 3 HOH B 36 336 305 HOH HOH . F 3 HOH B 37 337 18 HOH HOH . F 3 HOH B 38 338 4 HOH HOH . F 3 HOH B 39 339 114 HOH HOH . F 3 HOH B 40 340 93 HOH HOH . F 3 HOH B 41 341 72 HOH HOH . F 3 HOH B 42 342 41 HOH HOH . F 3 HOH B 43 343 68 HOH HOH . F 3 HOH B 44 344 10 HOH HOH . F 3 HOH B 45 345 120 HOH HOH . F 3 HOH B 46 346 33 HOH HOH . F 3 HOH B 47 347 300 HOH HOH . F 3 HOH B 48 348 326 HOH HOH . F 3 HOH B 49 349 8 HOH HOH . F 3 HOH B 50 350 148 HOH HOH . F 3 HOH B 51 351 325 HOH HOH . F 3 HOH B 52 352 56 HOH HOH . F 3 HOH B 53 353 36 HOH HOH . F 3 HOH B 54 354 327 HOH HOH . F 3 HOH B 55 355 292 HOH HOH . F 3 HOH B 56 356 132 HOH HOH . F 3 HOH B 57 357 16 HOH HOH . F 3 HOH B 58 358 293 HOH HOH . F 3 HOH B 59 359 322 HOH HOH . F 3 HOH B 60 360 1 HOH HOH . F 3 HOH B 61 361 63 HOH HOH . F 3 HOH B 62 362 127 HOH HOH . F 3 HOH B 63 363 26 HOH HOH . F 3 HOH B 64 364 130 HOH HOH . F 3 HOH B 65 365 295 HOH HOH . F 3 HOH B 66 366 297 HOH HOH . F 3 HOH B 67 367 27 HOH HOH . F 3 HOH B 68 368 224 HOH HOH . F 3 HOH B 69 369 311 HOH HOH . F 3 HOH B 70 370 38 HOH HOH . F 3 HOH B 71 371 32 HOH HOH . F 3 HOH B 72 372 291 HOH HOH . F 3 HOH B 73 373 320 HOH HOH . F 3 HOH B 74 374 43 HOH HOH . F 3 HOH B 75 375 106 HOH HOH . F 3 HOH B 76 376 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 TVH . . . D 2 -58.72 14.982 -22.692 1 54.34 ? C2 TVH 201 B 1 HETATM 2 C C3 TVH . . . D 2 -58.438 13.945 -21.633 1 49.14 ? C3 TVH 201 B 1 HETATM 3 C C6 TVH . . . D 2 -55.458 12.237 -23.068 1 48.38 ? C6 TVH 201 B 1 HETATM 4 C C8 TVH . . . D 2 -55.011 14.347 -24.478 1 53.23 ? C8 TVH 201 B 1 HETATM 5 C C10 TVH . . . D 2 -54.517 15.018 -26.838 1 64.42 ? C10 TVH 201 B 1 HETATM 6 C C11 TVH . . . D 2 -53.802 14.911 -28.011 1 57.72 ? C11 TVH 201 B 1 HETATM 7 C C12 TVH . . . D 2 -52.785 13.996 -28.093 1 63.44 ? C12 TVH 201 B 1 HETATM 8 C C13 TVH . . . D 2 -52.462 13.184 -27.036 1 47.79 ? C13 TVH 201 B 1 HETATM 9 C C14 TVH . . . D 2 -53.178 13.291 -25.861 1 52.01 ? C14 TVH 201 B 1 HETATM 10 O O17 TVH . . . D 2 -51.857 12.773 -29.817 1 110.97 ? O17 TVH 201 B 1 HETATM 11 C C21 TVH . . . D 2 -52.902 12.34 -20.429 1 44.85 ? C21 TVH 201 B 1 HETATM 12 C C22 TVH . . . D 2 -53.196 11.278 -19.581 1 53.45 ? C22 TVH 201 B 1 HETATM 13 C C23 TVH . . . D 2 -54.281 10.463 -19.858 1 50.95 ? C23 TVH 201 B 1 HETATM 14 C C24 TVH . . . D 2 -55.064 10.714 -20.977 1 50.2 ? C24 TVH 201 B 1 HETATM 15 C C26 TVH . . . D 2 -54.774 11.764 -21.813 1 41.42 ? C26 TVH 201 B 1 HETATM 16 C C27 TVH . . . D 2 -55.379 11.255 -24.226 1 43.32 ? C27 TVH 201 B 1 HETATM 17 C C28 TVH . . . D 2 -54.378 10.287 -24.292 1 50.55 ? C28 TVH 201 B 1 HETATM 18 C C35 TVH . . . D 2 -59.114 14.112 -20.312 1 47.05 ? C35 TVH 201 B 1 HETATM 19 O O1 TVH . . . D 2 -59.295 14.395 -23.847 1 66.31 ? O1 TVH 201 B 1 HETATM 20 C C4 TVH . . . D 2 -57.046 13.355 -21.611 1 46.84 ? C4 TVH 201 B 1 HETATM 21 O O5 TVH . . . D 2 -56.794 12.681 -22.849 1 45.11 ? O5 TVH 201 B 1 HETATM 22 N N7 TVH . . . D 2 -54.637 13.396 -23.437 1 55.19 ? N7 TVH 201 B 1 HETATM 23 C C9 TVH . . . D 2 -54.216 14.212 -25.75 1 52.23 ? C9 TVH 201 B 1 HETATM 24 N N15 TVH . . . D 2 -52.026 13.883 -29.341 1 76.77 1 N15 TVH 201 B 1 HETATM 25 O O16 TVH . . . D 2 -51.588 14.908 -29.844 1 114.61 -1 O16 TVH 201 B 1 HETATM 26 C C18 TVH . . . D 2 -53.604 13.614 -22.579 1 51.79 ? C18 TVH 201 B 1 HETATM 27 O O19 TVH . . . D 2 -52.778 14.512 -22.684 1 49.81 ? O19 TVH 201 B 1 HETATM 28 C C20 TVH . . . D 2 -53.697 12.571 -21.538 1 46.74 ? C20 TVH 201 B 1 HETATM 29 CL CL1 TVH . . . D 2 -56.421 9.689 -21.315 1 46.73 ? CL1 TVH 201 B 1 HETATM 30 C C29 TVH . . . D 2 -54.326 9.403 -25.354 1 42.56 ? C29 TVH 201 B 1 HETATM 31 C C30 TVH . . . D 2 -55.267 9.485 -26.347 1 50.49 ? C30 TVH 201 B 1 HETATM 32 CL CL2 TVH . . . D 2 -55.201 8.374 -27.683 1 48.47 ? CL2 TVH 201 B 1 HETATM 33 C C32 TVH . . . D 2 -56.267 10.433 -26.305 1 44.8 ? C32 TVH 201 B 1 HETATM 34 C C33 TVH . . . D 2 -56.322 11.315 -25.246 1 41.32 ? C33 TVH 201 B 1 HETATM 35 C C34 TVH . . . D 2 -59.568 13.043 -21.254 1 50.06 ? C34 TVH 201 B 1 HETATM 36 H H38 TVH . . . D 2 -57.881 15.432 -22.938 1 55.56 ? H38 TVH 201 B 1 HETATM 37 H H37 TVH . . . D 2 -59.335 15.654 -22.331 1 55.25 ? H37 TVH 201 B 1 HETATM 38 H H41 TVH . . . D 2 -54.894 15.259 -24.128 1 53.35 ? H41 TVH 201 B 1 HETATM 39 H H42 TVH . . . D 2 -55.964 14.226 -24.687 1 53.26 ? H42 TVH 201 B 1 HETATM 40 H H43 TVH . . . D 2 -55.227 15.653 -26.772 1 59.06 ? H43 TVH 201 B 1 HETATM 41 H H44 TVH . . . D 2 -54.012 15.468 -28.758 1 59.2 ? H44 TVH 201 B 1 HETATM 42 H H45 TVH . . . D 2 -51.749 12.552 -27.112 1 54.5 ? H45 TVH 201 B 1 HETATM 43 H H46 TVH . . . D 2 -52.96 12.73 -25.12 1 54.13 ? H46 TVH 201 B 1 HETATM 44 H H47 TVH . . . D 2 -52.156 12.908 -20.247 1 47.51 ? H47 TVH 201 B 1 HETATM 45 H H48 TVH . . . D 2 -52.652 11.111 -18.814 1 49.55 ? H48 TVH 201 B 1 HETATM 46 H H49 TVH . . . D 2 -54.491 9.731 -19.282 1 49.84 ? H49 TVH 201 B 1 HETATM 47 H H50 TVH . . . D 2 -53.724 10.233 -23.598 1 46.63 ? H50 TVH 201 B 1 HETATM 48 H H57 TVH . . . D 2 -59.691 14.893 -20.193 1 48.24 ? H57 TVH 201 B 1 HETATM 49 H H56 TVH . . . D 2 -58.621 13.839 -19.513 1 48.16 ? H56 TVH 201 B 1 HETATM 50 H H36 TVH . . . D 2 -59.364 13.559 -23.72 0 72.67 ? H36 TVH 201 B 1 HETATM 51 H H39 TVH . . . D 2 -56.968 12.722 -20.864 1 46.91 ? H39 TVH 201 B 1 HETATM 52 H H40 TVH . . . D 2 -56.385 14.072 -21.48 1 46.97 ? H40 TVH 201 B 1 HETATM 53 H H51 TVH . . . D 2 -53.639 8.741 -25.397 1 45.63 ? H51 TVH 201 B 1 HETATM 54 H H52 TVH . . . D 2 -56.917 10.478 -27.003 1 45.13 ? H52 TVH 201 B 1 HETATM 55 H H53 TVH . . . D 2 -57.013 11.973 -25.214 1 43.66 ? H53 TVH 201 B 1 HETATM 56 H H54 TVH . . . D 2 -59.352 12.116 -21.031 1 48.85 ? H54 TVH 201 B 1 HETATM 57 H H55 TVH . . . D 2 -60.42 13.169 -21.712 1 48.96 ? H55 TVH 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 57 #