data_7BJ3 # _model_server_result.job_id cyt9COVNhpHziqvQ0qM4ZA _model_server_result.datetime_utc '2024-12-26 02:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1104}' # _entry.id 7BJ3 # _exptl.entry_id 7BJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BJ3 _cell.length_a 167.39 _cell.length_b 167.39 _cell.length_c 141.84 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 520 A MET 550 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A O SER 521 A SER 551 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc3 A O ALA 523 A ALA 553 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc4 A O ALA 542 A ALA 572 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 A O SER 673 A SER 703 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc6 A OG SER 673 A SER 703 1_555 C NA NA . A NA 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 A O SER 792 A SER 822 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc8 A OG SER 792 A SER 822 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc9 A OD1 ASN 794 A ASN 824 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 A OD1 ASP 796 A ASP 826 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc11 A O ASN 798 A ASN 828 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc12 A OD1 ASP 800 A ASP 830 1_555 B CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc13 B CA CA . A CA 1101 1_555 Q O HOH . A HOH 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 257 n n C1 O1B MLA doub 258 n n C1 C2 MLA sing 259 n n O1A H1A MLA sing 260 n n C2 C3 MLA sing 261 n n C2 HC21 MLA sing 262 n n C2 HC22 MLA sing 263 n n C3 O3A MLA doub 264 n n C3 O3B MLA sing 265 n n O3B H3B MLA sing 266 n n # _atom_sites.entry_id 7BJ3 _atom_sites.fract_transf_matrix[1][1] 0.005974 _atom_sites.fract_transf_matrix[1][2] 0.003449 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00705 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1101 1 CA CA . C 3 NA A 1 1102 2 NA NA . D 4 EPE A 1 1103 3 EPE EPE . E 5 MLA A 1 1104 4 MLA MLA . F 6 SO4 A 1 1105 5 SO4 SO4 . G 6 SO4 A 1 1106 6 SO4 SO4 . H 6 SO4 A 1 1107 7 SO4 SO4 . I 6 SO4 A 1 1108 8 SO4 SO4 . J 6 SO4 A 1 1109 9 SO4 SO4 . K 6 SO4 A 1 1110 10 SO4 SO4 . L 6 SO4 A 1 1111 11 SO4 SO4 . M 6 SO4 A 1 1112 12 SO4 SO4 . N 6 SO4 A 1 1113 13 SO4 SO4 . O 6 SO4 A 1 1114 14 SO4 SO4 . P 6 SO4 A 1 1115 15 SO4 SO4 . Q 7 HOH A 1 1201 69 HOH HOH . Q 7 HOH A 2 1202 76 HOH HOH . Q 7 HOH A 3 1203 168 HOH HOH . Q 7 HOH A 4 1204 137 HOH HOH . Q 7 HOH A 5 1205 90 HOH HOH . Q 7 HOH A 6 1206 75 HOH HOH . Q 7 HOH A 7 1207 166 HOH HOH . Q 7 HOH A 8 1208 172 HOH HOH . Q 7 HOH A 9 1209 43 HOH HOH . Q 7 HOH A 10 1210 17 HOH HOH . Q 7 HOH A 11 1211 139 HOH HOH . Q 7 HOH A 12 1212 30 HOH HOH . Q 7 HOH A 13 1213 123 HOH HOH . Q 7 HOH A 14 1214 38 HOH HOH . Q 7 HOH A 15 1215 22 HOH HOH . Q 7 HOH A 16 1216 7 HOH HOH . Q 7 HOH A 17 1217 160 HOH HOH . Q 7 HOH A 18 1218 119 HOH HOH . Q 7 HOH A 19 1219 24 HOH HOH . Q 7 HOH A 20 1220 149 HOH HOH . Q 7 HOH A 21 1221 146 HOH HOH . Q 7 HOH A 22 1222 29 HOH HOH . Q 7 HOH A 23 1223 112 HOH HOH . Q 7 HOH A 24 1224 12 HOH HOH . Q 7 HOH A 25 1225 84 HOH HOH . Q 7 HOH A 26 1226 127 HOH HOH . Q 7 HOH A 27 1227 16 HOH HOH . Q 7 HOH A 28 1228 70 HOH HOH . Q 7 HOH A 29 1229 145 HOH HOH . Q 7 HOH A 30 1230 20 HOH HOH . Q 7 HOH A 31 1231 161 HOH HOH . Q 7 HOH A 32 1232 3 HOH HOH . Q 7 HOH A 33 1233 1 HOH HOH . Q 7 HOH A 34 1234 143 HOH HOH . Q 7 HOH A 35 1235 133 HOH HOH . Q 7 HOH A 36 1236 175 HOH HOH . Q 7 HOH A 37 1237 48 HOH HOH . Q 7 HOH A 38 1238 131 HOH HOH . Q 7 HOH A 39 1239 164 HOH HOH . Q 7 HOH A 40 1240 8 HOH HOH . Q 7 HOH A 41 1241 101 HOH HOH . Q 7 HOH A 42 1242 71 HOH HOH . Q 7 HOH A 43 1243 5 HOH HOH . Q 7 HOH A 44 1244 39 HOH HOH . Q 7 HOH A 45 1245 6 HOH HOH . Q 7 HOH A 46 1246 115 HOH HOH . Q 7 HOH A 47 1247 15 HOH HOH . Q 7 HOH A 48 1248 183 HOH HOH . Q 7 HOH A 49 1249 167 HOH HOH . Q 7 HOH A 50 1250 162 HOH HOH . Q 7 HOH A 51 1251 51 HOH HOH . Q 7 HOH A 52 1252 114 HOH HOH . Q 7 HOH A 53 1253 28 HOH HOH . Q 7 HOH A 54 1254 117 HOH HOH . Q 7 HOH A 55 1255 32 HOH HOH . Q 7 HOH A 56 1256 111 HOH HOH . Q 7 HOH A 57 1257 40 HOH HOH . Q 7 HOH A 58 1258 176 HOH HOH . Q 7 HOH A 59 1259 26 HOH HOH . Q 7 HOH A 60 1260 147 HOH HOH . Q 7 HOH A 61 1261 124 HOH HOH . Q 7 HOH A 62 1262 108 HOH HOH . Q 7 HOH A 63 1263 10 HOH HOH . Q 7 HOH A 64 1264 138 HOH HOH . Q 7 HOH A 65 1265 73 HOH HOH . Q 7 HOH A 66 1266 21 HOH HOH . Q 7 HOH A 67 1267 132 HOH HOH . Q 7 HOH A 68 1268 136 HOH HOH . Q 7 HOH A 69 1269 65 HOH HOH . Q 7 HOH A 70 1270 18 HOH HOH . Q 7 HOH A 71 1271 57 HOH HOH . Q 7 HOH A 72 1272 126 HOH HOH . Q 7 HOH A 73 1273 53 HOH HOH . Q 7 HOH A 74 1274 77 HOH HOH . Q 7 HOH A 75 1275 182 HOH HOH . Q 7 HOH A 76 1276 23 HOH HOH . Q 7 HOH A 77 1277 134 HOH HOH . Q 7 HOH A 78 1278 110 HOH HOH . Q 7 HOH A 79 1279 179 HOH HOH . Q 7 HOH A 80 1280 41 HOH HOH . Q 7 HOH A 81 1281 63 HOH HOH . Q 7 HOH A 82 1282 31 HOH HOH . Q 7 HOH A 83 1283 130 HOH HOH . Q 7 HOH A 84 1284 118 HOH HOH . Q 7 HOH A 85 1285 11 HOH HOH . Q 7 HOH A 86 1286 80 HOH HOH . Q 7 HOH A 87 1287 59 HOH HOH . Q 7 HOH A 88 1288 14 HOH HOH . Q 7 HOH A 89 1289 36 HOH HOH . Q 7 HOH A 90 1290 27 HOH HOH . Q 7 HOH A 91 1291 2 HOH HOH . Q 7 HOH A 92 1292 25 HOH HOH . Q 7 HOH A 93 1293 19 HOH HOH . Q 7 HOH A 94 1294 55 HOH HOH . Q 7 HOH A 95 1295 96 HOH HOH . Q 7 HOH A 96 1296 45 HOH HOH . Q 7 HOH A 97 1297 9 HOH HOH . Q 7 HOH A 98 1298 82 HOH HOH . Q 7 HOH A 99 1299 81 HOH HOH . Q 7 HOH A 100 1300 13 HOH HOH . Q 7 HOH A 101 1301 72 HOH HOH . Q 7 HOH A 102 1302 4 HOH HOH . Q 7 HOH A 103 1303 92 HOH HOH . Q 7 HOH A 104 1304 152 HOH HOH . Q 7 HOH A 105 1305 33 HOH HOH . Q 7 HOH A 106 1306 50 HOH HOH . Q 7 HOH A 107 1307 165 HOH HOH . Q 7 HOH A 108 1308 135 HOH HOH . Q 7 HOH A 109 1309 157 HOH HOH . Q 7 HOH A 110 1310 88 HOH HOH . Q 7 HOH A 111 1311 74 HOH HOH . Q 7 HOH A 112 1312 99 HOH HOH . Q 7 HOH A 113 1313 34 HOH HOH . Q 7 HOH A 114 1314 158 HOH HOH . Q 7 HOH A 115 1315 86 HOH HOH . Q 7 HOH A 116 1316 66 HOH HOH . Q 7 HOH A 117 1317 37 HOH HOH . Q 7 HOH A 118 1318 49 HOH HOH . Q 7 HOH A 119 1319 178 HOH HOH . Q 7 HOH A 120 1320 103 HOH HOH . Q 7 HOH A 121 1321 128 HOH HOH . Q 7 HOH A 122 1322 42 HOH HOH . Q 7 HOH A 123 1323 97 HOH HOH . Q 7 HOH A 124 1324 85 HOH HOH . Q 7 HOH A 125 1325 67 HOH HOH . Q 7 HOH A 126 1326 113 HOH HOH . Q 7 HOH A 127 1327 169 HOH HOH . Q 7 HOH A 128 1328 35 HOH HOH . Q 7 HOH A 129 1329 109 HOH HOH . Q 7 HOH A 130 1330 102 HOH HOH . Q 7 HOH A 131 1331 170 HOH HOH . Q 7 HOH A 132 1332 83 HOH HOH . Q 7 HOH A 133 1333 58 HOH HOH . Q 7 HOH A 134 1334 95 HOH HOH . Q 7 HOH A 135 1335 122 HOH HOH . Q 7 HOH A 136 1336 100 HOH HOH . Q 7 HOH A 137 1337 173 HOH HOH . Q 7 HOH A 138 1338 150 HOH HOH . Q 7 HOH A 139 1339 159 HOH HOH . Q 7 HOH A 140 1340 94 HOH HOH . Q 7 HOH A 141 1341 151 HOH HOH . Q 7 HOH A 142 1342 61 HOH HOH . Q 7 HOH A 143 1343 79 HOH HOH . Q 7 HOH A 144 1344 54 HOH HOH . Q 7 HOH A 145 1345 106 HOH HOH . Q 7 HOH A 146 1346 56 HOH HOH . Q 7 HOH A 147 1347 163 HOH HOH . Q 7 HOH A 148 1348 141 HOH HOH . Q 7 HOH A 149 1349 104 HOH HOH . Q 7 HOH A 150 1350 142 HOH HOH . Q 7 HOH A 151 1351 89 HOH HOH . Q 7 HOH A 152 1352 181 HOH HOH . Q 7 HOH A 153 1353 47 HOH HOH . Q 7 HOH A 154 1354 52 HOH HOH . Q 7 HOH A 155 1355 78 HOH HOH . Q 7 HOH A 156 1356 148 HOH HOH . Q 7 HOH A 157 1357 68 HOH HOH . Q 7 HOH A 158 1358 105 HOH HOH . Q 7 HOH A 159 1359 44 HOH HOH . Q 7 HOH A 160 1360 129 HOH HOH . Q 7 HOH A 161 1361 174 HOH HOH . Q 7 HOH A 162 1362 62 HOH HOH . Q 7 HOH A 163 1363 144 HOH HOH . Q 7 HOH A 164 1364 156 HOH HOH . Q 7 HOH A 165 1365 93 HOH HOH . Q 7 HOH A 166 1366 180 HOH HOH . Q 7 HOH A 167 1367 154 HOH HOH . Q 7 HOH A 168 1368 116 HOH HOH . Q 7 HOH A 169 1369 120 HOH HOH . Q 7 HOH A 170 1370 60 HOH HOH . Q 7 HOH A 171 1371 155 HOH HOH . Q 7 HOH A 172 1372 121 HOH HOH . Q 7 HOH A 173 1373 185 HOH HOH . Q 7 HOH A 174 1374 91 HOH HOH . Q 7 HOH A 175 1375 98 HOH HOH . Q 7 HOH A 176 1376 46 HOH HOH . Q 7 HOH A 177 1377 140 HOH HOH . Q 7 HOH A 178 1378 64 HOH HOH . Q 7 HOH A 179 1379 153 HOH HOH . Q 7 HOH A 180 1380 87 HOH HOH . Q 7 HOH A 181 1381 107 HOH HOH . Q 7 HOH A 182 1382 177 HOH HOH . Q 7 HOH A 183 1383 125 HOH HOH . Q 7 HOH A 184 1384 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . E 5 -66.983 16.389 15.394 1 44.81 ? C1 MLA 1104 A 1 HETATM 2 O O1A MLA . . . E 5 -67.63 15.313 15.498 1 45.86 ? O1A MLA 1104 A 1 HETATM 3 O O1B MLA . . . E 5 -66.36 16.647 14.329 1 42.58 ? O1B MLA 1104 A 1 HETATM 4 C C2 MLA . . . E 5 -66.958 17.372 16.564 1 41.99 ? C2 MLA 1104 A 1 HETATM 5 C C3 MLA . . . E 5 -66.847 18.806 16.055 1 42.27 ? C3 MLA 1104 A 1 HETATM 6 O O3A MLA . . . E 5 -65.785 19.202 15.508 1 47.42 ? O3A MLA 1104 A 1 HETATM 7 O O3B MLA . . . E 5 -67.816 19.597 16.189 1 44.98 ? O3B MLA 1104 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 7 #