data_7BJ6 # _model_server_result.job_id 4hIifZFcclm81a-Ep3p-yg _model_server_result.datetime_utc '2025-07-16 05:16:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 7BJ6 # _exptl.entry_id 7BJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 545.429 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BJ6 _cell.length_a 71.533 _cell.length_b 71.533 _cell.length_c 100.727 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H27 Cl2 F N2 O4' _chem_comp.formula_weight 545.429 _chem_comp.id TVK _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-2-[(5-chloranylpyridin-2-yl)methyl]-3-(4-chlorophenyl)-4-fluoranyl-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C32 TVK sing 328 n n C32 C31 TVK doub 329 n y C32 C34 TVK sing 330 n y C31 C30 TVK sing 331 n y C27 C25 TVK sing 332 n n C34 C35 TVK doub 333 n y C30 C29 TVK doub 334 n y CL1 C12 TVK sing 335 n n F23 C22 TVK sing 336 n n C21 C22 TVK doub 337 n y C21 C20 TVK sing 338 n y C35 C29 TVK sing 339 n y C25 C20 TVK sing 340 n n C25 O28 TVK sing 341 n n C25 C26 TVK sing 342 n n C29 C6 TVK sing 343 n n C22 C24 TVK sing 344 n y C11 C12 TVK doub 345 n y C11 C10 TVK sing 346 n y C12 C14 TVK sing 347 n y C20 C19 TVK doub 348 n y C24 C6 TVK sing 349 n n C24 C18 TVK doub 350 n y C10 C9 TVK doub 351 n y C19 C18 TVK sing 352 n y C14 N15 TVK doub 353 n y C6 O5 TVK sing 354 n n C6 N7 TVK sing 355 n n C18 C16 TVK sing 356 n n C9 N15 TVK sing 357 n y C9 C8 TVK sing 358 n n O5 C4 TVK sing 359 n n N7 C16 TVK sing 360 n n N7 C8 TVK sing 361 n n C16 O17 TVK doub 362 n n C4 C3 TVK sing 363 n n C37 C3 TVK sing 364 n n C37 C36 TVK sing 365 n n C3 C1 TVK sing 366 n n C3 C36 TVK sing 367 n n C1 O2 TVK sing 368 n n C1 H38 TVK sing 369 n n C1 H39 TVK sing 370 n n C8 H43 TVK sing 371 n n C8 H44 TVK sing 372 n n C10 H45 TVK sing 373 n n C11 H46 TVK sing 374 n n C14 H47 TVK sing 375 n n C19 H48 TVK sing 376 n n C21 H49 TVK sing 377 n n C26 H50 TVK sing 378 n n C26 H52 TVK sing 379 n n C26 H51 TVK sing 380 n n C27 H53 TVK sing 381 n n C27 H55 TVK sing 382 n n C27 H54 TVK sing 383 n n C31 H58 TVK sing 384 n n C35 H60 TVK sing 385 n n C36 H61 TVK sing 386 n n C36 H62 TVK sing 387 n n C37 H64 TVK sing 388 n n C37 H63 TVK sing 389 n n O2 H42 TVK sing 390 n n C4 H40 TVK sing 391 n n C4 H41 TVK sing 392 n n O28 H56 TVK sing 393 n n C30 H57 TVK sing 394 n n C34 H59 TVK sing 395 n n # _atom_sites.entry_id 7BJ6 _atom_sites.fract_transf_matrix[1][1] 0.01398 _atom_sites.fract_transf_matrix[1][2] 0.008071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 201 DMS DMS . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 SO4 A 1 204 1 SO4 SO4 . F 4 SO4 A 1 205 2 SO4 SO4 . G 4 SO4 A 1 206 3 SO4 SO4 . H 5 TVK A 1 207 1 TVK L01 . I 6 HOH A 1 301 23 HOH HOH . I 6 HOH A 2 302 8 HOH HOH . I 6 HOH A 3 303 14 HOH HOH . I 6 HOH A 4 304 11 HOH HOH . I 6 HOH A 5 305 142 HOH HOH . I 6 HOH A 6 306 7 HOH HOH . I 6 HOH A 7 307 111 HOH HOH . I 6 HOH A 8 308 20 HOH HOH . I 6 HOH A 9 309 5 HOH HOH . I 6 HOH A 10 310 6 HOH HOH . I 6 HOH A 11 311 1 HOH HOH . I 6 HOH A 12 312 41 HOH HOH . I 6 HOH A 13 313 26 HOH HOH . I 6 HOH A 14 314 13 HOH HOH . I 6 HOH A 15 315 6 HOH HOH . I 6 HOH A 16 316 12 HOH HOH . I 6 HOH A 17 317 14 HOH HOH . I 6 HOH A 18 318 50 HOH HOH . I 6 HOH A 19 319 135 HOH HOH . I 6 HOH A 20 320 25 HOH HOH . I 6 HOH A 21 321 15 HOH HOH . I 6 HOH A 22 322 20 HOH HOH . I 6 HOH A 23 323 22 HOH HOH . I 6 HOH A 24 324 3 HOH HOH . I 6 HOH A 25 325 19 HOH HOH . I 6 HOH A 26 326 131 HOH HOH . I 6 HOH A 27 327 30 HOH HOH . I 6 HOH A 28 328 22 HOH HOH . I 6 HOH A 29 329 9 HOH HOH . I 6 HOH A 30 330 10 HOH HOH . I 6 HOH A 31 331 49 HOH HOH . I 6 HOH A 32 332 130 HOH HOH . I 6 HOH A 33 333 3 HOH HOH . I 6 HOH A 34 334 25 HOH HOH . I 6 HOH A 35 335 24 HOH HOH . I 6 HOH A 36 336 15 HOH HOH . I 6 HOH A 37 337 26 HOH HOH . I 6 HOH A 38 338 4 HOH HOH . I 6 HOH A 39 339 17 HOH HOH . I 6 HOH A 40 340 2 HOH HOH . I 6 HOH A 41 341 12 HOH HOH . I 6 HOH A 42 342 43 HOH HOH . I 6 HOH A 43 343 7 HOH HOH . I 6 HOH A 44 344 13 HOH HOH . I 6 HOH A 45 345 136 HOH HOH . I 6 HOH A 46 346 23 HOH HOH . I 6 HOH A 47 347 11 HOH HOH . I 6 HOH A 48 348 37 HOH HOH . I 6 HOH A 49 349 36 HOH HOH . I 6 HOH A 50 350 16 HOH HOH . I 6 HOH A 51 351 38 HOH HOH . I 6 HOH A 52 352 27 HOH HOH . I 6 HOH A 53 353 16 HOH HOH . I 6 HOH A 54 354 97 HOH HOH . I 6 HOH A 55 355 134 HOH HOH . I 6 HOH A 56 356 10 HOH HOH . I 6 HOH A 57 357 33 HOH HOH . I 6 HOH A 58 358 62 HOH HOH . I 6 HOH A 59 359 35 HOH HOH . I 6 HOH A 60 360 51 HOH HOH . I 6 HOH A 61 361 63 HOH HOH . I 6 HOH A 62 362 28 HOH HOH . I 6 HOH A 63 363 18 HOH HOH . I 6 HOH A 64 364 122 HOH HOH . I 6 HOH A 65 365 57 HOH HOH . I 6 HOH A 66 366 8 HOH HOH . I 6 HOH A 67 367 27 HOH HOH . I 6 HOH A 68 368 21 HOH HOH . I 6 HOH A 69 369 48 HOH HOH . I 6 HOH A 70 370 2 HOH HOH . I 6 HOH A 71 371 141 HOH HOH . I 6 HOH A 72 372 65 HOH HOH . I 6 HOH A 73 373 48 HOH HOH . I 6 HOH A 74 374 31 HOH HOH . I 6 HOH A 75 375 51 HOH HOH . I 6 HOH A 76 376 66 HOH HOH . I 6 HOH A 77 377 76 HOH HOH . I 6 HOH A 78 378 83 HOH HOH . I 6 HOH A 79 379 44 HOH HOH . I 6 HOH A 80 380 28 HOH HOH . I 6 HOH A 81 381 56 HOH HOH . I 6 HOH A 82 382 47 HOH HOH . I 6 HOH A 83 383 58 HOH HOH . I 6 HOH A 84 384 17 HOH HOH . I 6 HOH A 85 385 132 HOH HOH . I 6 HOH A 86 386 40 HOH HOH . I 6 HOH A 87 387 4 HOH HOH . I 6 HOH A 88 388 144 HOH HOH . I 6 HOH A 89 389 138 HOH HOH . I 6 HOH A 90 390 72 HOH HOH . I 6 HOH A 91 391 32 HOH HOH . I 6 HOH A 92 392 39 HOH HOH . I 6 HOH A 93 393 50 HOH HOH . I 6 HOH A 94 394 143 HOH HOH . I 6 HOH A 95 395 44 HOH HOH . I 6 HOH A 96 396 52 HOH HOH . I 6 HOH A 97 397 9 HOH HOH . I 6 HOH A 98 398 34 HOH HOH . I 6 HOH A 99 399 60 HOH HOH . I 6 HOH A 100 400 29 HOH HOH . I 6 HOH A 101 401 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TVK . . . H 5 -18.504 -10.853 16.217 1 38.26 ? C1 TVK 207 A 1 HETATM 2 C C3 TVK . . . H 5 -18.66 -9.35 16.021 1 34.08 ? C3 TVK 207 A 1 HETATM 3 C C6 TVK . . . H 5 -21.449 -9.154 13.589 1 28.46 ? C6 TVK 207 A 1 HETATM 4 C C8 TVK . . . H 5 -23.086 -10.606 14.92 1 28.97 ? C8 TVK 207 A 1 HETATM 5 C C10 TVK . . . H 5 -24.903 -11.025 13.215 1 27.91 ? C10 TVK 207 A 1 HETATM 6 C C11 TVK . . . H 5 -25.626 -11.901 12.432 1 28.14 ? C11 TVK 207 A 1 HETATM 7 C C12 TVK . . . H 5 -25.406 -13.256 12.564 1 29.7 ? C12 TVK 207 A 1 HETATM 8 C C14 TVK . . . H 5 -24.416 -13.699 13.441 1 32.1 ? C14 TVK 207 A 1 HETATM 9 C C16 TVK . . . H 5 -23.431 -8.198 14.427 1 32.34 ? C16 TVK 207 A 1 HETATM 10 O O17 TVK . . . H 5 -24.486 -8.092 15.032 1 35.73 ? O17 TVK 207 A 1 HETATM 11 C C19 TVK . . . H 5 -23.08 -5.863 13.385 1 25.35 ? C19 TVK 207 A 1 HETATM 12 C C21 TVK . . . H 5 -21.068 -5.581 12.125 1 26.29 ? C21 TVK 207 A 1 HETATM 13 C C22 TVK . . . H 5 -20.713 -6.869 12.418 1 26.99 ? C22 TVK 207 A 1 HETATM 14 C C24 TVK . . . H 5 -21.526 -7.695 13.205 1 30.06 ? C24 TVK 207 A 1 HETATM 15 C C25 TVK . . . H 5 -22.698 -3.625 12.23 1 29.09 ? C25 TVK 207 A 1 HETATM 16 C C26 TVK . . . H 5 -21.8 -2.519 12.782 1 27.76 ? C26 TVK 207 A 1 HETATM 17 C C27 TVK . . . H 5 -22.815 -3.491 10.712 1 29.18 ? C27 TVK 207 A 1 HETATM 18 C C31 TVK . . . H 5 -22.301 -10.203 9.991 1 24.67 ? C31 TVK 207 A 1 HETATM 19 C C35 TVK . . . H 5 -20.86 -11.202 12.14 1 28.98 ? C35 TVK 207 A 1 HETATM 20 C C36 TVK . . . H 5 -17.999 -8.414 16.981 1 37.39 ? C36 TVK 207 A 1 HETATM 21 C C37 TVK . . . H 5 -17.481 -8.551 15.585 1 34.22 ? C37 TVK 207 A 1 HETATM 22 O O2 TVK . . . H 5 -19.574 -11.422 16.953 1 46.07 ? O2 TVK 207 A 1 HETATM 23 C C4 TVK . . . H 5 -20.04 -8.97 15.504 1 29.72 ? C4 TVK 207 A 1 HETATM 24 O O5 TVK . . . H 5 -20.264 -9.61 14.217 1 28.76 ? O5 TVK 207 A 1 HETATM 25 N N7 TVK . . . H 5 -22.685 -9.336 14.322 1 32.66 ? N7 TVK 207 A 1 HETATM 26 C C9 TVK . . . H 5 -23.934 -11.527 14.073 1 29.93 ? C9 TVK 207 A 1 HETATM 27 CL CL1 TVK . . . H 5 -26.33 -14.359 11.565 1 35.91 ? CL1 TVK 207 A 1 HETATM 28 N N15 TVK . . . H 5 -23.699 -12.849 14.205 1 33.55 ? N15 TVK 207 A 1 HETATM 29 C C18 TVK . . . H 5 -22.711 -7.163 13.674 1 27.83 ? C18 TVK 207 A 1 HETATM 30 C C20 TVK . . . H 5 -22.261 -5.04 12.603 1 26.34 ? C20 TVK 207 A 1 HETATM 31 F F23 TVK . . . H 5 -19.549 -7.361 11.956 1 30.39 ? F23 TVK 207 A 1 HETATM 32 O O28 TVK . . . H 5 -24.048 -3.519 12.726 1 31.11 ? O28 TVK 207 A 1 HETATM 33 C C29 TVK . . . H 5 -21.533 -9.987 12.289 1 27.14 ? C29 TVK 207 A 1 HETATM 34 C C30 TVK . . . H 5 -22.231 -9.492 11.183 1 28.7 ? C30 TVK 207 A 1 HETATM 35 C C32 TVK . . . H 5 -21.639 -11.396 9.885 1 25.74 ? C32 TVK 207 A 1 HETATM 36 CL CL2 TVK . . . H 5 -21.659 -12.251 8.345 1 27.15 ? CL2 TVK 207 A 1 HETATM 37 C C34 TVK . . . H 5 -20.917 -11.913 10.945 1 27.07 ? C34 TVK 207 A 1 HETATM 38 H H38 TVK . . . H 5 -17.54 -11.096 16.66 1 38.28 ? H38 TVK 207 A 1 HETATM 39 H H39 TVK . . . H 5 -18.558 -11.378 15.265 1 38.28 ? H39 TVK 207 A 1 HETATM 40 H H43 TVK . . . H 5 -22.184 -11.115 15.255 1 29.02 ? H43 TVK 207 A 1 HETATM 41 H H44 TVK . . . H 5 -23.62 -10.418 15.85 1 29 ? H44 TVK 207 A 1 HETATM 42 H H45 TVK . . . H 5 -25.096 -9.961 13.104 1 27.9 ? H45 TVK 207 A 1 HETATM 43 H H46 TVK . . . H 5 -26.397 -11.539 11.752 1 28.12 ? H46 TVK 207 A 1 HETATM 44 H H47 TVK . . . H 5 -24.184 -14.755 13.579 1 32.11 ? H47 TVK 207 A 1 HETATM 45 H H48 TVK . . . H 5 -24.05 -5.553 13.77 1 25.35 ? H48 TVK 207 A 1 HETATM 46 H H49 TVK . . . H 5 -20.408 -4.956 11.525 1 26.27 ? H49 TVK 207 A 1 HETATM 47 H H50 TVK . . . H 5 -20.747 -2.698 12.567 1 27.79 ? H50 TVK 207 A 1 HETATM 48 H H52 TVK . . . H 5 -21.89 -2.406 13.86 1 27.8 ? H52 TVK 207 A 1 HETATM 49 H H51 TVK . . . H 5 -22.013 -1.557 12.315 1 27.68 ? H51 TVK 207 A 1 HETATM 50 H H53 TVK . . . H 5 -23.337 -4.333 10.259 1 29.18 ? H53 TVK 207 A 1 HETATM 51 H H55 TVK . . . H 5 -21.844 -3.416 10.225 1 29.19 ? H55 TVK 207 A 1 HETATM 52 H H54 TVK . . . H 5 -23.367 -2.598 10.422 1 29.17 ? H54 TVK 207 A 1 HETATM 53 H H58 TVK . . . H 5 -22.847 -9.801 9.142 1 24.71 ? H58 TVK 207 A 1 HETATM 54 H H60 TVK . . . H 5 -20.278 -11.656 12.94 1 28.99 ? H60 TVK 207 A 1 HETATM 55 H H61 TVK . . . H 5 -18.483 -7.491 17.296 1 37.41 ? H61 TVK 207 A 1 HETATM 56 H H62 TVK . . . H 5 -17.44 -8.812 17.827 1 37.39 ? H62 TVK 207 A 1 HETATM 57 H H64 TVK . . . H 5 -17.597 -7.732 14.875 1 34.24 ? H64 TVK 207 A 1 HETATM 58 H H63 TVK . . . H 5 -16.526 -9.038 15.392 1 34.23 ? H63 TVK 207 A 1 HETATM 59 H H42 TVK . . . H 5 -19.196 -12.169 17.488 1 46.08 ? H42 TVK 207 A 1 HETATM 60 H H40 TVK . . . H 5 -20.781 -9.322 16.22 1 29.7 ? H40 TVK 207 A 1 HETATM 61 H H41 TVK . . . H 5 -20.116 -7.883 15.478 1 29.7 ? H41 TVK 207 A 1 HETATM 62 H H56 TVK . . . H 5 -24.287 -2.555 12.702 1 31.12 ? H56 TVK 207 A 1 HETATM 63 H H57 TVK . . . H 5 -22.777 -8.552 11.216 1 28.7 ? H57 TVK 207 A 1 HETATM 64 H H59 TVK . . . H 5 -20.391 -12.859 10.834 1 27.07 ? H59 TVK 207 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1326 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 64 #