data_7BJD # _model_server_result.job_id VMDcJHnj1unh5iF33ER_6g _model_server_result.datetime_utc '2024-10-19 16:34:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7BJD # _exptl.entry_id 7BJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.319 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-2-(3-methyl-4-{[4-(methylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1H-pyrazol-1-yl)propanenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.19 _cell.angle_gamma 90 _cell.entry_id 7BJD _cell.length_a 44.989 _cell.length_b 65.559 _cell.length_c 54.336 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H16 F3 N7' _chem_comp.formula_weight 339.319 _chem_comp.id TVT _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-2-(3-methyl-4-{[4-(methylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1H-pyrazol-1-yl)propanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-methyl-2-[3-methyl-4-[[4-(methylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]pyrazol-1-yl]propanenitrile # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C14 TVT sing 334 n n C9 C8 TVT sing 335 n n C1 N1 TVT sing 336 n n C10 C8 TVT sing 337 n n N1 C2 TVT sing 338 n n C14 F1 TVT sing 339 n n C14 F2 TVT sing 340 n n C14 C13 TVT sing 341 n n C8 N4 TVT sing 342 n n C8 C11 TVT sing 343 n n C2 C13 TVT doub 344 n y C2 N2 TVT sing 345 n y C13 C12 TVT sing 346 n y C5 N4 TVT sing 347 n y C5 C4 TVT doub 348 n y N2 C3 TVT doub 349 n y N4 N5 TVT sing 350 n y C11 N6 TVT trip 351 n n C12 N7 TVT doub 352 n y C3 N7 TVT sing 353 n y C3 N3 TVT sing 354 n n C4 N3 TVT sing 355 n n C4 C6 TVT sing 356 n y N5 C6 TVT doub 357 n y C6 C7 TVT sing 358 n n C1 H1 TVT sing 359 n n C1 H2 TVT sing 360 n n C1 H3 TVT sing 361 n n N1 H4 TVT sing 362 n n N3 H5 TVT sing 363 n n C5 H6 TVT sing 364 n n C7 H7 TVT sing 365 n n C7 H8 TVT sing 366 n n C7 H9 TVT sing 367 n n C9 H10 TVT sing 368 n n C9 H11 TVT sing 369 n n C9 H12 TVT sing 370 n n C10 H13 TVT sing 371 n n C10 H14 TVT sing 372 n n C10 H15 TVT sing 373 n n C12 H16 TVT sing 374 n n # _atom_sites.entry_id 7BJD _atom_sites.fract_transf_matrix[1][1] 0.022228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004803 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TVT A 1 301 1271 TVT UNL . C 3 CL A 1 302 1272 CL CL . D 3 CL A 1 303 1273 CL CL . E 4 HOH A 1 401 2067 HOH HOH . E 4 HOH A 2 402 2158 HOH HOH . E 4 HOH A 3 403 2163 HOH HOH . E 4 HOH A 4 404 2137 HOH HOH . E 4 HOH A 5 405 2189 HOH HOH . E 4 HOH A 6 406 2132 HOH HOH . E 4 HOH A 7 407 2147 HOH HOH . E 4 HOH A 8 408 2102 HOH HOH . E 4 HOH A 9 409 2049 HOH HOH . E 4 HOH A 10 410 2114 HOH HOH . E 4 HOH A 11 411 2192 HOH HOH . E 4 HOH A 12 412 2103 HOH HOH . E 4 HOH A 13 413 2140 HOH HOH . E 4 HOH A 14 414 2154 HOH HOH . E 4 HOH A 15 415 2134 HOH HOH . E 4 HOH A 16 416 2075 HOH HOH . E 4 HOH A 17 417 2133 HOH HOH . E 4 HOH A 18 418 2050 HOH HOH . E 4 HOH A 19 419 2194 HOH HOH . E 4 HOH A 20 420 2007 HOH HOH . E 4 HOH A 21 421 2059 HOH HOH . E 4 HOH A 22 422 2084 HOH HOH . E 4 HOH A 23 423 2196 HOH HOH . E 4 HOH A 24 424 2080 HOH HOH . E 4 HOH A 25 425 2036 HOH HOH . E 4 HOH A 26 426 2032 HOH HOH . E 4 HOH A 27 427 2063 HOH HOH . E 4 HOH A 28 428 2015 HOH HOH . E 4 HOH A 29 429 2048 HOH HOH . E 4 HOH A 30 430 2148 HOH HOH . E 4 HOH A 31 431 2181 HOH HOH . E 4 HOH A 32 432 2086 HOH HOH . E 4 HOH A 33 433 2120 HOH HOH . E 4 HOH A 34 434 2164 HOH HOH . E 4 HOH A 35 435 2073 HOH HOH . E 4 HOH A 36 436 2018 HOH HOH . E 4 HOH A 37 437 2038 HOH HOH . E 4 HOH A 38 438 2027 HOH HOH . E 4 HOH A 39 439 2011 HOH HOH . E 4 HOH A 40 440 2057 HOH HOH . E 4 HOH A 41 441 2066 HOH HOH . E 4 HOH A 42 442 2005 HOH HOH . E 4 HOH A 43 443 2058 HOH HOH . E 4 HOH A 44 444 2092 HOH HOH . E 4 HOH A 45 445 2028 HOH HOH . E 4 HOH A 46 446 2127 HOH HOH . E 4 HOH A 47 447 2070 HOH HOH . E 4 HOH A 48 448 2006 HOH HOH . E 4 HOH A 49 449 2130 HOH HOH . E 4 HOH A 50 450 2031 HOH HOH . E 4 HOH A 51 451 2143 HOH HOH . E 4 HOH A 52 452 2046 HOH HOH . E 4 HOH A 53 453 2020 HOH HOH . E 4 HOH A 54 454 2023 HOH HOH . E 4 HOH A 55 455 2039 HOH HOH . E 4 HOH A 56 456 2025 HOH HOH . E 4 HOH A 57 457 2017 HOH HOH . E 4 HOH A 58 458 2010 HOH HOH . E 4 HOH A 59 459 2037 HOH HOH . E 4 HOH A 60 460 2072 HOH HOH . E 4 HOH A 61 461 2151 HOH HOH . E 4 HOH A 62 462 2045 HOH HOH . E 4 HOH A 63 463 2094 HOH HOH . E 4 HOH A 64 464 2111 HOH HOH . E 4 HOH A 65 465 2088 HOH HOH . E 4 HOH A 66 466 2053 HOH HOH . E 4 HOH A 67 467 2064 HOH HOH . E 4 HOH A 68 468 2090 HOH HOH . E 4 HOH A 69 469 2004 HOH HOH . E 4 HOH A 70 470 2106 HOH HOH . E 4 HOH A 71 471 2022 HOH HOH . E 4 HOH A 72 472 2124 HOH HOH . E 4 HOH A 73 473 2013 HOH HOH . E 4 HOH A 74 474 2030 HOH HOH . E 4 HOH A 75 475 2003 HOH HOH . E 4 HOH A 76 476 2142 HOH HOH . E 4 HOH A 77 477 2091 HOH HOH . E 4 HOH A 78 478 2121 HOH HOH . E 4 HOH A 79 479 2024 HOH HOH . E 4 HOH A 80 480 2019 HOH HOH . E 4 HOH A 81 481 2166 HOH HOH . E 4 HOH A 82 482 2076 HOH HOH . E 4 HOH A 83 483 2052 HOH HOH . E 4 HOH A 84 484 2008 HOH HOH . E 4 HOH A 85 485 2156 HOH HOH . E 4 HOH A 86 486 2099 HOH HOH . E 4 HOH A 87 487 2146 HOH HOH . E 4 HOH A 88 488 2002 HOH HOH . E 4 HOH A 89 489 2136 HOH HOH . E 4 HOH A 90 490 2055 HOH HOH . E 4 HOH A 91 491 2184 HOH HOH . E 4 HOH A 92 492 2078 HOH HOH . E 4 HOH A 93 493 2042 HOH HOH . E 4 HOH A 94 494 2041 HOH HOH . E 4 HOH A 95 495 2065 HOH HOH . E 4 HOH A 96 496 2131 HOH HOH . E 4 HOH A 97 497 2178 HOH HOH . E 4 HOH A 98 498 2110 HOH HOH . E 4 HOH A 99 499 2012 HOH HOH . E 4 HOH A 100 500 2190 HOH HOH . E 4 HOH A 101 501 2128 HOH HOH . E 4 HOH A 102 502 2085 HOH HOH . E 4 HOH A 103 503 2034 HOH HOH . E 4 HOH A 104 504 2093 HOH HOH . E 4 HOH A 105 505 2062 HOH HOH . E 4 HOH A 106 506 2060 HOH HOH . E 4 HOH A 107 507 2054 HOH HOH . E 4 HOH A 108 508 2097 HOH HOH . E 4 HOH A 109 509 2026 HOH HOH . E 4 HOH A 110 510 2141 HOH HOH . E 4 HOH A 111 511 2162 HOH HOH . E 4 HOH A 112 512 2043 HOH HOH . E 4 HOH A 113 513 2047 HOH HOH . E 4 HOH A 114 514 2119 HOH HOH . E 4 HOH A 115 515 2188 HOH HOH . E 4 HOH A 116 516 2100 HOH HOH . E 4 HOH A 117 517 2040 HOH HOH . E 4 HOH A 118 518 2123 HOH HOH . E 4 HOH A 119 519 2195 HOH HOH . E 4 HOH A 120 520 2113 HOH HOH . E 4 HOH A 121 521 2035 HOH HOH . E 4 HOH A 122 522 2191 HOH HOH . E 4 HOH A 123 523 2098 HOH HOH . E 4 HOH A 124 524 2068 HOH HOH . E 4 HOH A 125 525 2104 HOH HOH . E 4 HOH A 126 526 2001 HOH HOH . E 4 HOH A 127 527 2129 HOH HOH . E 4 HOH A 128 528 2118 HOH HOH . E 4 HOH A 129 529 2083 HOH HOH . E 4 HOH A 130 530 2186 HOH HOH . E 4 HOH A 131 531 2126 HOH HOH . E 4 HOH A 132 532 2161 HOH HOH . E 4 HOH A 133 533 2061 HOH HOH . E 4 HOH A 134 534 2145 HOH HOH . E 4 HOH A 135 535 2193 HOH HOH . E 4 HOH A 136 536 2138 HOH HOH . E 4 HOH A 137 537 2105 HOH HOH . E 4 HOH A 138 538 2171 HOH HOH . E 4 HOH A 139 539 2177 HOH HOH . E 4 HOH A 140 540 2150 HOH HOH . E 4 HOH A 141 541 2168 HOH HOH . E 4 HOH A 142 542 2009 HOH HOH . E 4 HOH A 143 543 2077 HOH HOH . E 4 HOH A 144 544 2187 HOH HOH . E 4 HOH A 145 545 2107 HOH HOH . E 4 HOH A 146 546 2089 HOH HOH . E 4 HOH A 147 547 2155 HOH HOH . E 4 HOH A 148 548 2101 HOH HOH . E 4 HOH A 149 549 2169 HOH HOH . E 4 HOH A 150 550 2174 HOH HOH . E 4 HOH A 151 551 2144 HOH HOH . E 4 HOH A 152 552 2087 HOH HOH . E 4 HOH A 153 553 2108 HOH HOH . E 4 HOH A 154 554 2182 HOH HOH . E 4 HOH A 155 555 2199 HOH HOH . E 4 HOH A 156 556 2014 HOH HOH . E 4 HOH A 157 557 2079 HOH HOH . E 4 HOH A 158 558 2153 HOH HOH . E 4 HOH A 159 559 2044 HOH HOH . E 4 HOH A 160 560 2198 HOH HOH . E 4 HOH A 161 561 2135 HOH HOH . E 4 HOH A 162 562 2167 HOH HOH . E 4 HOH A 163 563 2175 HOH HOH . E 4 HOH A 164 564 2183 HOH HOH . E 4 HOH A 165 565 2165 HOH HOH . E 4 HOH A 166 566 2056 HOH HOH . E 4 HOH A 167 567 2117 HOH HOH . E 4 HOH A 168 568 2159 HOH HOH . E 4 HOH A 169 569 2179 HOH HOH . E 4 HOH A 170 570 2112 HOH HOH . E 4 HOH A 171 571 2081 HOH HOH . E 4 HOH A 172 572 2152 HOH HOH . E 4 HOH A 173 573 2160 HOH HOH . E 4 HOH A 174 574 2051 HOH HOH . E 4 HOH A 175 575 2197 HOH HOH . E 4 HOH A 176 576 2139 HOH HOH . E 4 HOH A 177 577 2095 HOH HOH . E 4 HOH A 178 578 2082 HOH HOH . E 4 HOH A 179 579 2125 HOH HOH . E 4 HOH A 180 580 2021 HOH HOH . E 4 HOH A 181 581 2149 HOH HOH . E 4 HOH A 182 582 2071 HOH HOH . E 4 HOH A 183 583 2115 HOH HOH . E 4 HOH A 184 584 2069 HOH HOH . E 4 HOH A 185 585 2029 HOH HOH . E 4 HOH A 186 586 2185 HOH HOH . E 4 HOH A 187 587 2074 HOH HOH . E 4 HOH A 188 588 2173 HOH HOH . E 4 HOH A 189 589 2109 HOH HOH . E 4 HOH A 190 590 2122 HOH HOH . E 4 HOH A 191 591 2096 HOH HOH . E 4 HOH A 192 592 2033 HOH HOH . E 4 HOH A 193 593 2157 HOH HOH . E 4 HOH A 194 594 2176 HOH HOH . E 4 HOH A 195 595 2016 HOH HOH . E 4 HOH A 196 596 2172 HOH HOH . E 4 HOH A 197 597 2116 HOH HOH . E 4 HOH A 198 598 2170 HOH HOH . E 4 HOH A 199 599 2180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TVT . . . B 2 4.427 -5.766 17.515 1 34.99 ? C1 TVT 301 A 1 HETATM 2 N N1 TVT . . . B 2 5.403 -4.772 17.894 1 32.2 ? N1 TVT 301 A 1 HETATM 3 C C2 TVT . . . B 2 5.092 -3.648 18.569 1 33.69 ? C2 TVT 301 A 1 HETATM 4 N N2 TVT . . . B 2 3.827 -3.508 19.023 1 32.1 ? N2 TVT 301 A 1 HETATM 5 C C3 TVT . . . B 2 3.554 -2.384 19.689 1 31.46 ? C3 TVT 301 A 1 HETATM 6 N N3 TVT . . . B 2 2.289 -2.163 20.162 1 32 ? N3 TVT 301 A 1 HETATM 7 C C4 TVT . . . B 2 1.207 -3.002 19.948 1 34.64 ? C4 TVT 301 A 1 HETATM 8 N N4 TVT . . . B 2 -0.107 -4.529 19.129 1 40.04 ? N4 TVT 301 A 1 HETATM 9 C C5 TVT . . . B 2 1.102 -3.967 18.985 1 37.03 ? C5 TVT 301 A 1 HETATM 10 N N5 TVT . . . B 2 -0.81 -3.966 20.174 1 39.63 ? N5 TVT 301 A 1 HETATM 11 C C6 TVT . . . B 2 0.008 -3.046 20.682 1 40.43 ? C6 TVT 301 A 1 HETATM 12 N N6 TVT . . . B 2 -0.934 -7.651 19.875 1 49.21 ? N6 TVT 301 A 1 HETATM 13 C C7 TVT . . . B 2 -0.42 -2.228 21.861 1 43.33 ? C7 TVT 301 A 1 HETATM 14 N N7 TVT . . . B 2 4.437 -1.405 19.932 1 35.44 ? N7 TVT 301 A 1 HETATM 15 C C8 TVT . . . B 2 -0.72 -5.575 18.328 1 46.95 ? C8 TVT 301 A 1 HETATM 16 C C9 TVT . . . B 2 0.14 -6.062 17.16 1 47.64 ? C9 TVT 301 A 1 HETATM 17 C C10 TVT . . . B 2 -2.093 -5.137 17.82 1 45.44 ? C10 TVT 301 A 1 HETATM 18 C C11 TVT . . . B 2 -0.879 -6.743 19.218 1 49.38 ? C11 TVT 301 A 1 HETATM 19 C C12 TVT . . . B 2 5.686 -1.566 19.49 1 34 ? C12 TVT 301 A 1 HETATM 20 C C13 TVT . . . B 2 6.09 -2.671 18.802 1 31.18 ? C13 TVT 301 A 1 HETATM 21 C C14 TVT . . . B 2 7.482 -2.77 18.264 1 37.4 ? C14 TVT 301 A 1 HETATM 22 F F1 TVT . . . B 2 8.259 -1.791 18.585 1 34.14 ? F1 TVT 301 A 1 HETATM 23 F F2 TVT . . . B 2 8.122 -3.883 18.656 1 35.63 ? F2 TVT 301 A 1 HETATM 24 F F3 TVT . . . B 2 7.49 -2.722 16.921 1 41.74 ? F3 TVT 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #