data_7BJY
#
_model_server_result.job_id            3QJfUvv4qjg8erQzHA_MmA 
_model_server_result.datetime_utc      '2024-11-05 08:03:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bjy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7BJY 
#
_exptl.entry_id    7BJY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              543.609 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7BJY 
_cell.length_a            57.04 
_cell.length_b            57.04 
_cell.length_c            407.87 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BJY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G 1 1 
B,D,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H35 F2 N7 O3' 
_chem_comp.formula_weight    543.609 
_chem_comp.id                79C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(9-cyclopentyl-7,7-difluoro-5-methyl-6-oxo-6,7,8,9-tetrahydro-5H-pyrimido[4,5-b][1,4]diazepin-2-yl)amino]-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F19 C18 79C sing 1 n n 
C18 F20 79C sing 2 n n 
C18 C21 79C sing 3 n n 
C18 C16 79C sing 4 n n 
O17 C16 79C doub 5 n n 
C21 N22 79C sing 6 n n 
C26 C25 79C sing 7 n n 
C26 C27 79C sing 8 n n 
C25 C24 79C sing 9 n n 
C16 N14 79C sing 10 n n 
C24 C23 79C sing 11 n n 
C27 C23 79C sing 12 n n 
N22 C23 79C sing 13 n n 
N22 C28 79C sing 14 n n 
N14 C15 79C sing 15 n n 
N14 C13 79C sing 16 n n 
C28 C13 79C doub 17 n y 
C28 N29 79C sing 18 n y 
C13 C12 79C sing 19 n y 
C37 N36 79C sing 20 n n 
N36 C35 79C sing 21 n n 
N36 C38 79C sing 22 n n 
N29 C10 79C doub 23 n y 
C35 C34 79C sing 24 n n 
C12 N11 79C doub 25 n y 
C34 C33 79C sing 26 n n 
C38 C39 79C sing 27 n n 
C39 C33 79C sing 28 n n 
C10 N11 79C sing 29 n y 
C10 N9 79C sing 30 n n 
C7 C6 79C doub 31 n y 
C7 C8 79C sing 32 n y 
N32 C33 79C sing 33 n n 
N32 C30 79C sing 34 n n 
C6 C5 79C sing 35 n y 
N9 C8 79C sing 36 n n 
C8 C3 79C doub 37 n y 
C5 C30 79C sing 38 n n 
C5 C4 79C doub 39 n y 
C30 O31 79C doub 40 n n 
C3 C4 79C sing 41 n y 
C3 O2 79C sing 42 n n 
O2 C1 79C sing 43 n n 
C4 H1 79C sing 44 n n 
C6 H2 79C sing 45 n n 
C7 H3 79C sing 46 n n 
C15 H4 79C sing 47 n n 
C15 H5 79C sing 48 n n 
C15 H6 79C sing 49 n n 
C21 H7 79C sing 50 n n 
C21 H8 79C sing 51 n n 
C24 H9 79C sing 52 n n 
C24 H10 79C sing 53 n n 
C26 H11 79C sing 54 n n 
C26 H12 79C sing 55 n n 
C1 H13 79C sing 56 n n 
C1 H14 79C sing 57 n n 
C1 H15 79C sing 58 n n 
N9 H16 79C sing 59 n n 
C12 H17 79C sing 60 n n 
C23 H18 79C sing 61 n n 
C25 H19 79C sing 62 n n 
C25 H20 79C sing 63 n n 
C27 H21 79C sing 64 n n 
C27 H22 79C sing 65 n n 
N32 H23 79C sing 66 n n 
C33 H24 79C sing 67 n n 
C34 H25 79C sing 68 n n 
C34 H26 79C sing 69 n n 
C35 H27 79C sing 70 n n 
C35 H28 79C sing 71 n n 
C37 H30 79C sing 72 n n 
C37 H31 79C sing 73 n n 
C37 H32 79C sing 74 n n 
C38 H33 79C sing 75 n n 
C38 H34 79C sing 76 n n 
C39 H35 79C sing 77 n n 
C39 H36 79C sing 78 n n 
#
_atom_sites.entry_id                     7BJY 
_atom_sites.fract_transf_matrix[1][1]    0.017532 
_atom_sites.fract_transf_matrix[1][2]    0.010122 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020244 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002452 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 79C A 1 201 1 79C 79C . 
D 2 79C B 1 201 2 79C 79C . 
E 3 EDO B 1 202 1 EDO EDO . 
F 3 EDO B 1 203 2 EDO EDO . 
G 4 HOH A 1 301 30 HOH HOH . 
G 4 HOH A 2 302 32 HOH HOH . 
G 4 HOH A 3 303 12 HOH HOH . 
G 4 HOH A 4 304 7 HOH HOH . 
G 4 HOH A 5 305 8 HOH HOH . 
G 4 HOH A 6 306 2 HOH HOH . 
G 4 HOH A 7 307 22 HOH HOH . 
G 4 HOH A 8 308 24 HOH HOH . 
G 4 HOH A 9 309 31 HOH HOH . 
G 4 HOH A 10 310 14 HOH HOH . 
G 4 HOH A 11 311 10 HOH HOH . 
G 4 HOH A 12 312 4 HOH HOH . 
G 4 HOH A 13 313 34 HOH HOH . 
G 4 HOH A 14 314 29 HOH HOH . 
G 4 HOH A 15 315 33 HOH HOH . 
G 4 HOH A 16 316 11 HOH HOH . 
G 4 HOH A 17 317 19 HOH HOH . 
G 4 HOH A 18 318 15 HOH HOH . 
H 4 HOH B 1 301 13 HOH HOH . 
H 4 HOH B 2 302 6 HOH HOH . 
H 4 HOH B 3 303 23 HOH HOH . 
H 4 HOH B 4 304 9 HOH HOH . 
H 4 HOH B 5 305 1 HOH HOH . 
H 4 HOH B 6 306 17 HOH HOH . 
H 4 HOH B 7 307 20 HOH HOH . 
H 4 HOH B 8 308 37 HOH HOH . 
H 4 HOH B 9 309 25 HOH HOH . 
H 4 HOH B 10 310 36 HOH HOH . 
H 4 HOH B 11 311 18 HOH HOH . 
H 4 HOH B 12 312 28 HOH HOH . 
H 4 HOH B 13 313 3 HOH HOH . 
H 4 HOH B 14 314 38 HOH HOH . 
H 4 HOH B 15 315 35 HOH HOH . 
H 4 HOH B 16 316 5 HOH HOH . 
H 4 HOH B 17 317 26 HOH HOH . 
H 4 HOH B 18 318 21 HOH HOH . 
H 4 HOH B 19 319 40 HOH HOH . 
H 4 HOH B 20 320 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 79C . . . D 2 -6.726 28.014 29.361 1 94.24 ? C4 79C 201 B 1 
HETATM 2 C C5 79C . . . D 2 -6.336 29.298 29.742 1 95.33 ? C5 79C 201 B 1 
HETATM 3 C C6 79C . . . D 2 -5.334 29.964 29.062 1 90.53 ? C6 79C 201 B 1 
HETATM 4 C C7 79C . . . D 2 -4.713 29.327 28.007 1 88.56 ? C7 79C 201 B 1 
HETATM 5 C C8 79C . . . D 2 -5.081 28.042 27.593 1 89.47 ? C8 79C 201 B 1 
HETATM 6 C C10 79C . . . D 2 -3.629 28.152 25.508 1 70.27 ? C10 79C 201 B 1 
HETATM 7 C C13 79C . . . D 2 -2.209 29.701 23.787 1 54.07 ? C13 79C 201 B 1 
HETATM 8 C C15 79C . . . D 2 0.01 30.264 22.884 1 49.35 ? C15 79C 201 B 1 
HETATM 9 C C21 79C . . . D 2 -3.886 32.527 23.344 1 53.88 ? C21 79C 201 B 1 
HETATM 10 C C24 79C . . . D 2 -5.925 31.765 25.383 1 54.54 ? C24 79C 201 B 1 
HETATM 11 C C26 79C . . . D 2 -5.806 34.179 25.681 1 53.22 ? C26 79C 201 B 1 
HETATM 12 C C28 79C . . . D 2 -3.223 30.265 24.55 1 58.6 ? C28 79C 201 B 1 
HETATM 13 C C1 79C . . . D 2 -5.585 25.051 28.218 1 90.14 ? C1 79C 201 B 1 
HETATM 14 O O2 79C . . . D 2 -6.48 26.08 27.892 1 89.71 ? O2 79C 201 B 1 
HETATM 15 C C3 79C . . . D 2 -6.095 27.378 28.286 1 93.28 ? C3 79C 201 B 1 
HETATM 16 N N9 79C . . . D 2 -4.424 27.385 26.451 1 80.93 ? N9 79C 201 B 1 
HETATM 17 N N11 79C . . . D 2 -2.654 27.578 24.802 1 71.72 ? N11 79C 201 B 1 
HETATM 18 C C12 79C . . . D 2 -1.933 28.308 23.95 1 67.16 ? C12 79C 201 B 1 
HETATM 19 N N14 79C . . . D 2 -1.423 30.534 22.895 1 44.47 ? N14 79C 201 B 1 
HETATM 20 C C16 79C . . . D 2 -1.878 31.62 22.074 1 42.37 ? C16 79C 201 B 1 
HETATM 21 O O17 79C . . . D 2 -1.097 32.233 21.434 1 42.84 ? O17 79C 201 B 1 
HETATM 22 C C18 79C . . . D 2 -3.375 31.908 22.053 1 55.24 ? C18 79C 201 B 1 
HETATM 23 F F19 79C . . . D 2 -3.998 30.718 21.81 1 54.61 ? F19 79C 201 B 1 
HETATM 24 F F20 79C . . . D 2 -3.706 32.749 21.035 1 62.87 ? F20 79C 201 B 1 
HETATM 25 N N22 79C . . . D 2 -3.649 31.699 24.505 1 57.69 ? N22 79C 201 B 1 
HETATM 26 C C23 79C . . . D 2 -4.412 32.213 25.647 1 53.12 ? C23 79C 201 B 1 
HETATM 27 C C25 79C . . . D 2 -6.702 32.792 25.853 1 60.69 ? C25 79C 201 B 1 
HETATM 28 C C27 79C . . . D 2 -4.503 33.795 25.872 1 50.17 ? C27 79C 201 B 1 
HETATM 29 N N29 79C . . . D 2 -3.902 29.437 25.367 1 64.16 ? N29 79C 201 B 1 
HETATM 30 C C30 79C . . . D 2 -7.001 30.031 30.902 1 102.01 ? C30 79C 201 B 1 
HETATM 31 O O31 79C . . . D 2 -7.812 29.464 31.552 1 107.71 ? O31 79C 201 B 1 
HETATM 32 N N32 79C . . . D 2 -6.617 31.427 31.14 1 98.42 ? N32 79C 201 B 1 
HETATM 33 C C33 79C . . . D 2 -7.16 32.278 32.197 1 94.89 ? C33 79C 201 B 1 
HETATM 34 C C34 79C . . . D 2 -8.388 32.876 31.745 1 95.33 ? C34 79C 201 B 1 
HETATM 35 C C35 79C . . . D 2 -8.811 34.002 32.687 1 96.59 ? C35 79C 201 B 1 
HETATM 36 N N36 79C . . . D 2 -8.629 33.67 34.078 1 99.6 ? N36 79C 201 B 1 
HETATM 37 C C37 79C . . . D 2 -9.554 34.076 34.747 1 99.8 ? C37 79C 201 B 1 
HETATM 38 C C38 79C . . . D 2 -8.329 32.284 34.381 1 99.06 ? C38 79C 201 B 1 
HETATM 39 C C39 79C . . . D 2 -7.359 31.566 33.434 1 92.84 ? C39 79C 201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#