data_7BKA # _model_server_result.job_id p7eYI1cOCyN8VcZ6nh_0pA _model_server_result.datetime_utc '2024-11-23 03:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":202}' # _entry.id 7BKA # _exptl.entry_id 7BKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.14 _cell.angle_gamma 90 _cell.entry_id 7BKA _cell.length_a 113.67 _cell.length_b 142.03 _cell.length_c 77.9 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,P 1 1,2 B,C,H,I,J,K,Q,R 2 1 D,E,L,M,N,O,S,T 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 106 n n S C1 DMS sing 107 n n S C2 DMS sing 108 n n C1 H11 DMS sing 109 n n C1 H12 DMS sing 110 n n C1 H13 DMS sing 111 n n C2 H21 DMS sing 112 n n C2 H22 DMS sing 113 n n C2 H23 DMS sing 114 n n # _atom_sites.entry_id 7BKA _atom_sites.fract_transf_matrix[1][1] 0.008797 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003943 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 4JC A 1 201 201 4JC DRG . G 3 DMS A 1 202 301 DMS DMS . H 2 4JC B 1 201 201 4JC DRG . I 3 DMS B 1 202 301 DMS DMS . J 2 4JC C 1 201 201 4JC DRG . K 3 DMS C 1 202 301 DMS DMS . L 2 4JC D 1 201 201 4JC DRG . M 3 DMS D 1 202 301 DMS DMS . N 2 4JC E 1 201 201 4JC DRG . O 3 DMS E 1 202 301 DMS DMS . P 4 HOH A 1 301 163 HOH HOH . P 4 HOH A 2 302 109 HOH HOH . P 4 HOH A 3 303 93 HOH HOH . P 4 HOH A 4 304 42 HOH HOH . P 4 HOH A 5 305 92 HOH HOH . P 4 HOH A 6 306 102 HOH HOH . P 4 HOH A 7 307 167 HOH HOH . P 4 HOH A 8 308 38 HOH HOH . P 4 HOH A 9 309 12 HOH HOH . P 4 HOH A 10 310 171 HOH HOH . P 4 HOH A 11 311 63 HOH HOH . P 4 HOH A 12 312 165 HOH HOH . P 4 HOH A 13 313 143 HOH HOH . P 4 HOH A 14 314 18 HOH HOH . P 4 HOH A 15 315 36 HOH HOH . P 4 HOH A 16 316 98 HOH HOH . P 4 HOH A 17 317 141 HOH HOH . P 4 HOH A 18 318 185 HOH HOH . P 4 HOH A 19 319 72 HOH HOH . P 4 HOH A 20 320 71 HOH HOH . P 4 HOH A 21 321 32 HOH HOH . P 4 HOH A 22 322 70 HOH HOH . P 4 HOH A 23 323 60 HOH HOH . P 4 HOH A 24 324 158 HOH HOH . P 4 HOH A 25 325 20 HOH HOH . P 4 HOH A 26 326 145 HOH HOH . P 4 HOH A 27 327 164 HOH HOH . P 4 HOH A 28 328 39 HOH HOH . P 4 HOH A 29 329 23 HOH HOH . P 4 HOH A 30 330 34 HOH HOH . P 4 HOH A 31 331 13 HOH HOH . P 4 HOH A 32 332 129 HOH HOH . P 4 HOH A 33 333 68 HOH HOH . P 4 HOH A 34 334 50 HOH HOH . P 4 HOH A 35 335 51 HOH HOH . P 4 HOH A 36 336 130 HOH HOH . P 4 HOH A 37 337 144 HOH HOH . P 4 HOH A 38 338 55 HOH HOH . P 4 HOH A 39 339 168 HOH HOH . P 4 HOH A 40 340 44 HOH HOH . P 4 HOH A 41 341 155 HOH HOH . P 4 HOH A 42 342 59 HOH HOH . P 4 HOH A 43 343 57 HOH HOH . P 4 HOH A 44 344 138 HOH HOH . Q 4 HOH B 1 301 80 HOH HOH . Q 4 HOH B 2 302 75 HOH HOH . Q 4 HOH B 3 303 24 HOH HOH . Q 4 HOH B 4 304 111 HOH HOH . Q 4 HOH B 5 305 10 HOH HOH . Q 4 HOH B 6 306 175 HOH HOH . Q 4 HOH B 7 307 26 HOH HOH . Q 4 HOH B 8 308 89 HOH HOH . Q 4 HOH B 9 309 125 HOH HOH . Q 4 HOH B 10 310 169 HOH HOH . Q 4 HOH B 11 311 41 HOH HOH . Q 4 HOH B 12 312 179 HOH HOH . Q 4 HOH B 13 313 151 HOH HOH . Q 4 HOH B 14 314 22 HOH HOH . Q 4 HOH B 15 315 77 HOH HOH . Q 4 HOH B 16 316 112 HOH HOH . Q 4 HOH B 17 317 126 HOH HOH . Q 4 HOH B 18 318 25 HOH HOH . Q 4 HOH B 19 319 4 HOH HOH . Q 4 HOH B 20 320 90 HOH HOH . Q 4 HOH B 21 321 147 HOH HOH . Q 4 HOH B 22 322 159 HOH HOH . Q 4 HOH B 23 323 16 HOH HOH . Q 4 HOH B 24 324 9 HOH HOH . Q 4 HOH B 25 325 116 HOH HOH . Q 4 HOH B 26 326 180 HOH HOH . Q 4 HOH B 27 327 106 HOH HOH . Q 4 HOH B 28 328 19 HOH HOH . Q 4 HOH B 29 329 66 HOH HOH . Q 4 HOH B 30 330 115 HOH HOH . Q 4 HOH B 31 331 197 HOH HOH . Q 4 HOH B 32 332 184 HOH HOH . Q 4 HOH B 33 333 192 HOH HOH . Q 4 HOH B 34 334 83 HOH HOH . Q 4 HOH B 35 335 122 HOH HOH . Q 4 HOH B 36 336 84 HOH HOH . Q 4 HOH B 37 337 160 HOH HOH . Q 4 HOH B 38 338 181 HOH HOH . Q 4 HOH B 39 339 146 HOH HOH . Q 4 HOH B 40 340 110 HOH HOH . Q 4 HOH B 41 341 43 HOH HOH . Q 4 HOH B 42 342 131 HOH HOH . Q 4 HOH B 43 343 82 HOH HOH . R 4 HOH C 1 301 124 HOH HOH . R 4 HOH C 2 302 134 HOH HOH . R 4 HOH C 3 303 193 HOH HOH . R 4 HOH C 4 304 152 HOH HOH . R 4 HOH C 5 305 99 HOH HOH . R 4 HOH C 6 306 64 HOH HOH . R 4 HOH C 7 307 189 HOH HOH . R 4 HOH C 8 308 52 HOH HOH . R 4 HOH C 9 309 61 HOH HOH . R 4 HOH C 10 310 172 HOH HOH . R 4 HOH C 11 311 188 HOH HOH . R 4 HOH C 12 312 40 HOH HOH . R 4 HOH C 13 313 174 HOH HOH . R 4 HOH C 14 314 8 HOH HOH . R 4 HOH C 15 315 91 HOH HOH . R 4 HOH C 16 316 94 HOH HOH . R 4 HOH C 17 317 79 HOH HOH . R 4 HOH C 18 318 183 HOH HOH . R 4 HOH C 19 319 120 HOH HOH . R 4 HOH C 20 320 46 HOH HOH . R 4 HOH C 21 321 31 HOH HOH . R 4 HOH C 22 322 76 HOH HOH . R 4 HOH C 23 323 154 HOH HOH . R 4 HOH C 24 324 88 HOH HOH . R 4 HOH C 25 325 140 HOH HOH . S 4 HOH D 1 301 162 HOH HOH . S 4 HOH D 2 302 49 HOH HOH . S 4 HOH D 3 303 73 HOH HOH . S 4 HOH D 4 304 133 HOH HOH . S 4 HOH D 5 305 27 HOH HOH . S 4 HOH D 6 306 30 HOH HOH . S 4 HOH D 7 307 156 HOH HOH . S 4 HOH D 8 308 96 HOH HOH . S 4 HOH D 9 309 114 HOH HOH . S 4 HOH D 10 310 173 HOH HOH . S 4 HOH D 11 311 149 HOH HOH . S 4 HOH D 12 312 100 HOH HOH . S 4 HOH D 13 313 190 HOH HOH . S 4 HOH D 14 314 105 HOH HOH . S 4 HOH D 15 315 176 HOH HOH . S 4 HOH D 16 316 177 HOH HOH . S 4 HOH D 17 317 81 HOH HOH . S 4 HOH D 18 318 62 HOH HOH . S 4 HOH D 19 319 47 HOH HOH . S 4 HOH D 20 320 87 HOH HOH . S 4 HOH D 21 321 142 HOH HOH . S 4 HOH D 22 322 187 HOH HOH . S 4 HOH D 23 323 182 HOH HOH . S 4 HOH D 24 324 101 HOH HOH . S 4 HOH D 25 325 194 HOH HOH . S 4 HOH D 26 326 153 HOH HOH . S 4 HOH D 27 327 33 HOH HOH . S 4 HOH D 28 328 67 HOH HOH . S 4 HOH D 29 329 74 HOH HOH . S 4 HOH D 30 330 95 HOH HOH . S 4 HOH D 31 331 104 HOH HOH . S 4 HOH D 32 332 195 HOH HOH . S 4 HOH D 33 333 108 HOH HOH . S 4 HOH D 34 334 118 HOH HOH . S 4 HOH D 35 335 35 HOH HOH . S 4 HOH D 36 336 54 HOH HOH . S 4 HOH D 37 337 103 HOH HOH . S 4 HOH D 38 338 139 HOH HOH . S 4 HOH D 39 339 135 HOH HOH . T 4 HOH E 1 301 69 HOH HOH . T 4 HOH E 2 302 56 HOH HOH . T 4 HOH E 3 303 161 HOH HOH . T 4 HOH E 4 304 14 HOH HOH . T 4 HOH E 5 305 150 HOH HOH . T 4 HOH E 6 306 170 HOH HOH . T 4 HOH E 7 307 186 HOH HOH . T 4 HOH E 8 308 121 HOH HOH . T 4 HOH E 9 309 148 HOH HOH . T 4 HOH E 10 310 127 HOH HOH . T 4 HOH E 11 311 137 HOH HOH . T 4 HOH E 12 312 117 HOH HOH . T 4 HOH E 13 313 45 HOH HOH . T 4 HOH E 14 314 86 HOH HOH . T 4 HOH E 15 315 166 HOH HOH . T 4 HOH E 16 316 17 HOH HOH . T 4 HOH E 17 317 123 HOH HOH . T 4 HOH E 18 318 78 HOH HOH . T 4 HOH E 19 319 191 HOH HOH . T 4 HOH E 20 320 157 HOH HOH . T 4 HOH E 21 321 29 HOH HOH . T 4 HOH E 22 322 21 HOH HOH . T 4 HOH E 23 323 37 HOH HOH . T 4 HOH E 24 324 196 HOH HOH . T 4 HOH E 25 325 128 HOH HOH . T 4 HOH E 26 326 107 HOH HOH . T 4 HOH E 27 327 113 HOH HOH . T 4 HOH E 28 328 178 HOH HOH . T 4 HOH E 29 329 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . O 3 15.524 45.809 30.263 1 44.23 ? S DMS 202 E 1 HETATM 2 O O DMS . . . O 3 14.589 46.315 31.291 1 39.67 ? O DMS 202 E 1 HETATM 3 C C1 DMS . . . O 3 15.622 44.077 30.537 1 46.98 ? C1 DMS 202 E 1 HETATM 4 C C2 DMS . . . O 3 17.158 46.172 30.862 1 51.27 ? C2 DMS 202 E 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #