data_7BKP # _model_server_result.job_id PA3pG2PaWtLKW2hxfv09sg _model_server_result.datetime_utc '2025-03-06 06:58:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1102}' # _entry.id 7BKP # _exptl.entry_id 7BKP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BKP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 910 A CYS 910 1_555 A SG CYS 964 A CYS 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc1 A SG CYS 907 A CYS 907 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc2 A SG CYS 910 A CYS 910 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A SG CYS 962 A CYS 962 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 A SG CYS 964 A CYS 964 1_555 D ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 E O3G ATP . A ATP 1102 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc6 E O2B ATP . A ATP 1102 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? hydrog WATSON-CRICK hydrog1 B N3 C 1 Z C 1 1_555 C N1 G 14 X G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 C 1 Z C 1 1_555 C O6 G 14 X G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 C 1 Z C 1 1_555 C N2 G 14 X G 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 U 2 Z U 2 1_555 C N1 A 13 X A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 U 2 Z U 2 1_555 C N6 A 13 X A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 C 3 Z C 3 1_555 C N1 G 12 X G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 C 3 Z C 3 1_555 C O6 G 12 X G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 C 3 Z C 3 1_555 C N2 G 12 X G 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 U 4 Z U 4 1_555 C N1 A 11 X A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 U 4 Z U 4 1_555 C N6 A 11 X A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 C 5 Z C 5 1_555 C N1 G 10 X G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N4 C 5 Z C 5 1_555 C O6 G 10 X G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O2 C 5 Z C 5 1_555 C N2 G 10 X G 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 C 6 Z C 6 1_555 C N1 G 9 X G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 C 6 Z C 6 1_555 C O6 G 9 X G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 C 6 Z C 6 1_555 C N2 G 9 X G 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 U 7 Z U 7 1_555 C N1 A 8 X A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 U 7 Z U 7 1_555 C N6 A 8 X A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 C 8 Z C 8 1_555 C N1 G 7 X G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N4 C 8 Z C 8 1_555 C O6 G 7 X G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O2 C 8 Z C 8 1_555 C N2 G 7 X G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 G 9 Z G 9 1_555 C N3 C 6 X C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N2 G 9 Z G 9 1_555 C O2 C 6 X C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O6 G 9 Z G 9 1_555 C N4 C 6 X C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 G 10 Z G 10 1_555 C N3 C 5 X C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 G 10 Z G 10 1_555 C O2 C 5 X C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 G 10 Z G 10 1_555 C N4 C 5 X C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 C 11 Z C 11 1_555 C N1 G 4 X G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N4 C 11 Z C 11 1_555 C O6 G 4 X G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O2 C 11 Z C 11 1_555 C N2 G 4 X G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 U 12 Z U 12 1_555 C N1 A 3 X A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O4 U 12 Z U 12 1_555 C N6 A 3 X A 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 U 13 Z U 13 1_555 C N1 A 2 X A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B O4 U 13 Z U 13 1_555 C N6 A 2 X A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B N1 G 14 Z G 14 1_555 C N3 C 1 X C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N2 G 14 Z G 14 1_555 C O2 C 1 X C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B O6 G 14 Z G 14 1_555 C N4 C 1 X C 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 7BKP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1101 1101 ZN ZN . E 5 ATP A 1 1102 1102 ATP ATP . F 6 MG A 1 1103 1103 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 92.658 130.352 119.463 1 48.98 ? PG ATP 1102 A 1 HETATM 2 O O1G ATP . . . E 5 93.168 130.074 118.072 1 48.98 ? O1G ATP 1102 A 1 HETATM 3 O O2G ATP . . . E 5 93.364 131.459 120.202 1 48.98 ? O2G ATP 1102 A 1 HETATM 4 O O3G ATP . . . E 5 92.395 129.107 120.278 1 48.98 ? O3G ATP 1102 A 1 HETATM 5 P PB ATP . . . E 5 89.938 129.983 119.504 1 48.98 ? PB ATP 1102 A 1 HETATM 6 O O1B ATP . . . E 5 89.318 129.607 118.186 1 48.98 ? O1B ATP 1102 A 1 HETATM 7 O O2B ATP . . . E 5 90.369 128.919 120.477 1 48.98 ? O2B ATP 1102 A 1 HETATM 8 O O3B ATP . . . E 5 91.187 130.951 119.241 1 48.98 ? O3B ATP 1102 A 1 HETATM 9 P PA ATP . . . E 5 88.832 130.824 121.853 1 48.98 ? PA ATP 1102 A 1 HETATM 10 O O1A ATP . . . E 5 90.148 131.26 122.443 1 48.98 ? O1A ATP 1102 A 1 HETATM 11 O O2A ATP . . . E 5 88.272 129.466 122.183 1 48.98 ? O2A ATP 1102 A 1 HETATM 12 O O3A ATP . . . E 5 88.942 130.973 120.263 1 48.98 ? O3A ATP 1102 A 1 HETATM 13 O O5' ATP . . . E 5 87.742 131.933 122.23 1 48.98 ? O5' ATP 1102 A 1 HETATM 14 C C5' ATP . . . E 5 87.394 132.062 123.598 1 48.98 ? C5' ATP 1102 A 1 HETATM 15 C C4' ATP . . . E 5 86.827 133.442 123.885 1 48.98 ? C4' ATP 1102 A 1 HETATM 16 O O4' ATP . . . E 5 85.682 133.678 123.082 1 48.98 ? O4' ATP 1102 A 1 HETATM 17 C C3' ATP . . . E 5 86.419 133.563 125.341 1 48.98 ? C3' ATP 1102 A 1 HETATM 18 O O3' ATP . . . E 5 87.203 134.596 125.947 1 48.98 ? O3' ATP 1102 A 1 HETATM 19 C C2' ATP . . . E 5 84.933 133.868 125.335 1 48.98 ? C2' ATP 1102 A 1 HETATM 20 O O2' ATP . . . E 5 84.667 135.044 126.096 1 48.98 ? O2' ATP 1102 A 1 HETATM 21 C C1' ATP . . . E 5 84.538 134.013 123.867 1 48.98 ? C1' ATP 1102 A 1 HETATM 22 N N9 ATP . . . E 5 83.448 133.084 123.474 1 48.98 ? N9 ATP 1102 A 1 HETATM 23 C C8 ATP . . . E 5 83.497 132.266 122.411 1 48.98 ? C8 ATP 1102 A 1 HETATM 24 N N7 ATP . . . E 5 82.353 131.551 122.3 1 48.98 ? N7 ATP 1102 A 1 HETATM 25 C C5 ATP . . . E 5 81.552 131.917 123.307 1 48.98 ? C5 ATP 1102 A 1 HETATM 26 C C6 ATP . . . E 5 80.204 131.549 123.772 1 48.98 ? C6 ATP 1102 A 1 HETATM 27 N N6 ATP . . . E 5 79.47 130.625 123.119 1 48.98 ? N6 ATP 1102 A 1 HETATM 28 N N1 ATP . . . E 5 79.732 132.17 124.869 1 48.98 ? N1 ATP 1102 A 1 HETATM 29 C C2 ATP . . . E 5 80.453 133.094 125.529 1 48.98 ? C2 ATP 1102 A 1 HETATM 30 N N3 ATP . . . E 5 81.684 133.475 125.161 1 48.98 ? N3 ATP 1102 A 1 HETATM 31 C C4 ATP . . . E 5 82.276 132.935 124.078 1 48.98 ? C4 ATP 1102 A 1 HETATM 32 H "H5'1" ATP . . . E 5 88.183 131.91 124.142 1 48.98 ? "H5'1" ATP 1102 A 1 HETATM 33 H "H5'2" ATP . . . E 5 86.734 131.388 123.826 1 48.98 ? "H5'2" ATP 1102 A 1 HETATM 34 H H4' ATP . . . E 5 87.512 134.1 123.689 1 48.98 ? H4' ATP 1102 A 1 HETATM 35 H H3' ATP . . . E 5 86.568 132.717 125.792 1 48.98 ? H3' ATP 1102 A 1 HETATM 36 H HO3' ATP . . . E 5 87.223 135.26 125.433 1 48.98 ? HO3' ATP 1102 A 1 HETATM 37 H H2' ATP . . . E 5 84.452 133.122 125.727 1 48.98 ? H2' ATP 1102 A 1 HETATM 38 H HO2' ATP . . . E 5 85.363 135.508 126.168 1 48.98 ? HO2' ATP 1102 A 1 HETATM 39 H H1' ATP . . . E 5 84.272 134.93 123.693 1 48.98 ? H1' ATP 1102 A 1 HETATM 40 H H8 ATP . . . E 5 84.249 132.194 121.803 1 48.98 ? H8 ATP 1102 A 1 HETATM 41 H HN61 ATP . . . E 5 79.78 130.236 122.417 1 48.98 ? HN61 ATP 1102 A 1 HETATM 42 H HN62 ATP . . . E 5 78.684 130.426 123.405 1 48.98 ? HN62 ATP 1102 A 1 HETATM 43 H H2 ATP . . . E 5 80.065 133.507 126.316 1 48.98 ? H2 ATP 1102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #