data_7BKY # _model_server_result.job_id MdvJzbs_6XGwgehiTiN-uA _model_server_result.datetime_utc '2024-11-20 03:41:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":417}' # _entry.id 7BKY # _exptl.entry_id 7BKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.33 _cell.angle_gamma 90 _cell.entry_id 7BKY _cell.length_a 45.762 _cell.length_b 74.007 _cell.length_c 53.339 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.065 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 120 n n S C1 DMS sing 121 n n S C2 DMS sing 122 n n C1 H11 DMS sing 123 n n C1 H12 DMS sing 124 n n C1 H13 DMS sing 125 n n C2 H21 DMS sing 126 n n C2 H22 DMS sing 127 n n C2 H23 DMS sing 128 n n # _atom_sites.entry_id 7BKY _atom_sites.fract_transf_matrix[1][1] 0.021852 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1E A 1 401 401 U1E LIG . C 3 DMS A 1 402 501 DMS DMS . D 4 1PE A 1 403 701 1PE 1PE . E 3 DMS A 1 404 1 DMS DMS . F 3 DMS A 1 405 2 DMS DMS . G 3 DMS A 1 406 3 DMS DMS . H 3 DMS A 1 407 4 DMS DMS . I 3 DMS A 1 408 5 DMS DMS . J 3 DMS A 1 409 6 DMS DMS . K 3 DMS A 1 410 7 DMS DMS . L 3 DMS A 1 411 8 DMS DMS . M 3 DMS A 1 412 9 DMS DMS . N 3 DMS A 1 413 10 DMS DMS . O 3 DMS A 1 414 11 DMS DMS . P 3 DMS A 1 415 12 DMS DMS . Q 3 DMS A 1 416 13 DMS DMS . R 3 DMS A 1 417 14 DMS DMS . S 3 DMS A 1 418 15 DMS DMS . T 3 DMS A 1 419 16 DMS DMS . U 3 DMS A 1 420 18 DMS DMS . V 5 HOH A 1 501 119 HOH HOH . V 5 HOH A 2 502 71 HOH HOH . V 5 HOH A 3 503 111 HOH HOH . V 5 HOH A 4 504 32 HOH HOH . V 5 HOH A 5 505 51 HOH HOH . V 5 HOH A 6 506 86 HOH HOH . V 5 HOH A 7 507 34 HOH HOH . V 5 HOH A 8 508 135 HOH HOH . V 5 HOH A 9 509 67 HOH HOH . V 5 HOH A 10 510 10 HOH HOH . V 5 HOH A 11 511 8 HOH HOH . V 5 HOH A 12 512 7 HOH HOH . V 5 HOH A 13 513 3 HOH HOH . V 5 HOH A 14 514 118 HOH HOH . V 5 HOH A 15 515 27 HOH HOH . V 5 HOH A 16 516 28 HOH HOH . V 5 HOH A 17 517 59 HOH HOH . V 5 HOH A 18 518 84 HOH HOH . V 5 HOH A 19 519 68 HOH HOH . V 5 HOH A 20 520 75 HOH HOH . V 5 HOH A 21 521 99 HOH HOH . V 5 HOH A 22 522 64 HOH HOH . V 5 HOH A 23 523 56 HOH HOH . V 5 HOH A 24 524 106 HOH HOH . V 5 HOH A 25 525 136 HOH HOH . V 5 HOH A 26 526 22 HOH HOH . V 5 HOH A 27 527 55 HOH HOH . V 5 HOH A 28 528 11 HOH HOH . V 5 HOH A 29 529 105 HOH HOH . V 5 HOH A 30 530 109 HOH HOH . V 5 HOH A 31 531 33 HOH HOH . V 5 HOH A 32 532 83 HOH HOH . V 5 HOH A 33 533 1 HOH HOH . V 5 HOH A 34 534 63 HOH HOH . V 5 HOH A 35 535 35 HOH HOH . V 5 HOH A 36 536 140 HOH HOH . V 5 HOH A 37 537 77 HOH HOH . V 5 HOH A 38 538 81 HOH HOH . V 5 HOH A 39 539 4 HOH HOH . V 5 HOH A 40 540 2 HOH HOH . V 5 HOH A 41 541 14 HOH HOH . V 5 HOH A 42 542 61 HOH HOH . V 5 HOH A 43 543 17 HOH HOH . V 5 HOH A 44 544 79 HOH HOH . V 5 HOH A 45 545 133 HOH HOH . V 5 HOH A 46 546 25 HOH HOH . V 5 HOH A 47 547 144 HOH HOH . V 5 HOH A 48 548 57 HOH HOH . V 5 HOH A 49 549 117 HOH HOH . V 5 HOH A 50 550 60 HOH HOH . V 5 HOH A 51 551 43 HOH HOH . V 5 HOH A 52 552 58 HOH HOH . V 5 HOH A 53 553 26 HOH HOH . V 5 HOH A 54 554 116 HOH HOH . V 5 HOH A 55 555 21 HOH HOH . V 5 HOH A 56 556 5 HOH HOH . V 5 HOH A 57 557 44 HOH HOH . V 5 HOH A 58 558 15 HOH HOH . V 5 HOH A 59 559 164 HOH HOH . V 5 HOH A 60 560 9 HOH HOH . V 5 HOH A 61 561 41 HOH HOH . V 5 HOH A 62 562 6 HOH HOH . V 5 HOH A 63 563 92 HOH HOH . V 5 HOH A 64 564 73 HOH HOH . V 5 HOH A 65 565 42 HOH HOH . V 5 HOH A 66 566 93 HOH HOH . V 5 HOH A 67 567 96 HOH HOH . V 5 HOH A 68 568 19 HOH HOH . V 5 HOH A 69 569 36 HOH HOH . V 5 HOH A 70 570 16 HOH HOH . V 5 HOH A 71 571 72 HOH HOH . V 5 HOH A 72 572 76 HOH HOH . V 5 HOH A 73 573 50 HOH HOH . V 5 HOH A 74 574 45 HOH HOH . V 5 HOH A 75 575 65 HOH HOH . V 5 HOH A 76 576 104 HOH HOH . V 5 HOH A 77 577 74 HOH HOH . V 5 HOH A 78 578 29 HOH HOH . V 5 HOH A 79 579 125 HOH HOH . V 5 HOH A 80 580 88 HOH HOH . V 5 HOH A 81 581 94 HOH HOH . V 5 HOH A 82 582 115 HOH HOH . V 5 HOH A 83 583 82 HOH HOH . V 5 HOH A 84 584 47 HOH HOH . V 5 HOH A 85 585 48 HOH HOH . V 5 HOH A 86 586 78 HOH HOH . V 5 HOH A 87 587 39 HOH HOH . V 5 HOH A 88 588 89 HOH HOH . V 5 HOH A 89 589 54 HOH HOH . V 5 HOH A 90 590 87 HOH HOH . V 5 HOH A 91 591 38 HOH HOH . V 5 HOH A 92 592 70 HOH HOH . V 5 HOH A 93 593 37 HOH HOH . V 5 HOH A 94 594 152 HOH HOH . V 5 HOH A 95 595 62 HOH HOH . V 5 HOH A 96 596 12 HOH HOH . V 5 HOH A 97 597 31 HOH HOH . V 5 HOH A 98 598 13 HOH HOH . V 5 HOH A 99 599 129 HOH HOH . V 5 HOH A 100 600 149 HOH HOH . V 5 HOH A 101 601 40 HOH HOH . V 5 HOH A 102 602 123 HOH HOH . V 5 HOH A 103 603 131 HOH HOH . V 5 HOH A 104 604 49 HOH HOH . V 5 HOH A 105 605 158 HOH HOH . V 5 HOH A 106 606 80 HOH HOH . V 5 HOH A 107 607 102 HOH HOH . V 5 HOH A 108 608 97 HOH HOH . V 5 HOH A 109 609 138 HOH HOH . V 5 HOH A 110 610 69 HOH HOH . V 5 HOH A 111 611 23 HOH HOH . V 5 HOH A 112 612 66 HOH HOH . V 5 HOH A 113 613 52 HOH HOH . V 5 HOH A 114 614 150 HOH HOH . V 5 HOH A 115 615 30 HOH HOH . V 5 HOH A 116 616 120 HOH HOH . V 5 HOH A 117 617 107 HOH HOH . V 5 HOH A 118 618 143 HOH HOH . V 5 HOH A 119 619 98 HOH HOH . V 5 HOH A 120 620 156 HOH HOH . V 5 HOH A 121 621 101 HOH HOH . V 5 HOH A 122 622 110 HOH HOH . V 5 HOH A 123 623 145 HOH HOH . V 5 HOH A 124 624 24 HOH HOH . V 5 HOH A 125 625 103 HOH HOH . V 5 HOH A 126 626 100 HOH HOH . V 5 HOH A 127 627 90 HOH HOH . V 5 HOH A 128 628 134 HOH HOH . V 5 HOH A 129 629 154 HOH HOH . V 5 HOH A 130 630 18 HOH HOH . V 5 HOH A 131 631 200 HOH HOH . V 5 HOH A 132 632 91 HOH HOH . V 5 HOH A 133 633 95 HOH HOH . V 5 HOH A 134 634 46 HOH HOH . V 5 HOH A 135 635 190 HOH HOH . V 5 HOH A 136 636 127 HOH HOH . V 5 HOH A 137 637 198 HOH HOH . V 5 HOH A 138 638 180 HOH HOH . V 5 HOH A 139 639 148 HOH HOH . V 5 HOH A 140 640 53 HOH HOH . V 5 HOH A 141 641 172 HOH HOH . V 5 HOH A 142 642 157 HOH HOH . V 5 HOH A 143 643 199 HOH HOH . V 5 HOH A 144 644 168 HOH HOH . V 5 HOH A 145 645 194 HOH HOH . V 5 HOH A 146 646 173 HOH HOH . V 5 HOH A 147 647 126 HOH HOH . V 5 HOH A 148 648 166 HOH HOH . V 5 HOH A 149 649 189 HOH HOH . V 5 HOH A 150 650 181 HOH HOH . V 5 HOH A 151 651 108 HOH HOH . V 5 HOH A 152 652 178 HOH HOH . V 5 HOH A 153 653 177 HOH HOH . V 5 HOH A 154 654 113 HOH HOH . V 5 HOH A 155 655 137 HOH HOH . V 5 HOH A 156 656 196 HOH HOH . V 5 HOH A 157 657 184 HOH HOH . V 5 HOH A 158 658 124 HOH HOH . V 5 HOH A 159 659 147 HOH HOH . V 5 HOH A 160 660 163 HOH HOH . V 5 HOH A 161 661 183 HOH HOH . V 5 HOH A 162 662 160 HOH HOH . V 5 HOH A 163 663 165 HOH HOH . V 5 HOH A 164 664 186 HOH HOH . V 5 HOH A 165 665 169 HOH HOH . V 5 HOH A 166 666 187 HOH HOH . V 5 HOH A 167 667 85 HOH HOH . V 5 HOH A 168 668 191 HOH HOH . V 5 HOH A 169 669 167 HOH HOH . V 5 HOH A 170 670 132 HOH HOH . V 5 HOH A 171 671 182 HOH HOH . V 5 HOH A 172 672 128 HOH HOH . V 5 HOH A 173 673 112 HOH HOH . V 5 HOH A 174 674 192 HOH HOH . V 5 HOH A 175 675 188 HOH HOH . V 5 HOH A 176 676 139 HOH HOH . V 5 HOH A 177 677 142 HOH HOH . V 5 HOH A 178 678 155 HOH HOH . V 5 HOH A 179 679 130 HOH HOH . V 5 HOH A 180 680 185 HOH HOH . V 5 HOH A 181 681 179 HOH HOH . V 5 HOH A 182 682 171 HOH HOH . V 5 HOH A 183 683 197 HOH HOH . V 5 HOH A 184 684 159 HOH HOH . V 5 HOH A 185 685 122 HOH HOH . V 5 HOH A 186 686 195 HOH HOH . V 5 HOH A 187 687 161 HOH HOH . V 5 HOH A 188 688 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . R 3 -15.986 -21.157 -1.729 1 70.4 ? S DMS 417 A 1 HETATM 2 O O DMS . . . R 3 -17.039 -22.16 -2.094 1 70.67 ? O DMS 417 A 1 HETATM 3 C C1 DMS . . . R 3 -15.946 -19.735 -2.862 1 69.23 ? C1 DMS 417 A 1 HETATM 4 C C2 DMS . . . R 3 -14.335 -21.767 -2.168 1 69.68 ? C2 DMS 417 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #