data_7BL7
#
_model_server_result.job_id            ytau4bRg49yP2jyxaTvrcw 
_model_server_result.datetime_utc      '2024-10-12 01:20:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":301}' 
#
_entry.id    7BL7 
#
_exptl.entry_id    7BL7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BL7 
_cell.length_a            151.23 
_cell.length_b            165.75 
_cell.length_c            125.02 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,CA,DA,EA,FA,GA,HA 1 1 
G,H,I,J,K,L,U,V,W,X,Y,Z,AA,BA,IA,JA,KA,LA,MA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 N N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
? 3 Z N N 
? 3 AA N N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 370 n n 
PA O2A UTP sing 371 n n 
PA O3A UTP sing 372 n n 
PA O5' UTP sing 373 n n 
O2A H2A UTP sing 374 n n 
O3A PB UTP sing 375 n n 
O5' C5' UTP sing 376 n n 
PB O1B UTP sing 377 n n 
PB O2B UTP doub 378 n n 
PB O3B UTP sing 379 n n 
O1B H1B UTP sing 380 n n 
O3B PG UTP sing 381 n n 
PG O1G UTP sing 382 n n 
PG O2G UTP doub 383 n n 
PG O3G UTP sing 384 n n 
O1G H1G UTP sing 385 n n 
O3G H3G UTP sing 386 n n 
C5' C4' UTP sing 387 n n 
C5' "H5'1" UTP sing 388 n n 
C5' "H5'2" UTP sing 389 n n 
C4' O4' UTP sing 390 n n 
C4' C3' UTP sing 391 n n 
C4' H4' UTP sing 392 n n 
O4' C1' UTP sing 393 n n 
C1' C2' UTP sing 394 n n 
C1' N1 UTP sing 395 n n 
C1' H1' UTP sing 396 n n 
C2' O2' UTP sing 397 n n 
C2' C3' UTP sing 398 n n 
C2' H2' UTP sing 399 n n 
O2' HA UTP sing 400 n n 
C3' O3' UTP sing 401 n n 
C3' H3' UTP sing 402 n n 
O3' HB UTP sing 403 n n 
N1 C6 UTP sing 404 n y 
N1 C2 UTP sing 405 n y 
C6 C5 UTP doub 406 n y 
C6 H6 UTP sing 407 n n 
C2 O2 UTP doub 408 n n 
C2 N3 UTP sing 409 n y 
N3 C4 UTP sing 410 n y 
N3 H3 UTP sing 411 n n 
C4 O4 UTP doub 412 n n 
C4 C5 UTP sing 413 n y 
C5 H5 UTP sing 414 n n 
#
_atom_sites.entry_id                     7BL7 
_atom_sites.fract_transf_matrix[1][1]    0.006612 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006033 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007999 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 UDP B 1 301 5 UDP UDP . 
N 3 UTP A 1 301 4 UTP UTP . 
O 3 UTP F 1 301 1 UTP UTP . 
P 2 UDP E 1 301 6 UDP UDP . 
Q 3 UTP D 1 301 2 UTP UTP . 
R 2 UDP D 1 302 2 UDP UDP . 
S 3 UTP C 1 301 3 UTP UTP . 
T 2 UDP C 1 302 1 UDP UDP . 
U 3 UTP I 1 301 2 UTP UTP . 
V 2 UDP I 1 302 4 UDP UDP . 
W 3 UTP J 1 301 3 UTP UTP . 
X 2 UDP J 1 302 3 UDP UDP . 
Y 2 UDP K 1 301 8 UDP UDP . 
Z 3 UTP L 1 301 4 UTP UTP . 
AA 3 UTP G 1 301 1 UTP UTP . 
BA 2 UDP H 1 301 7 UDP UDP . 
CA 4 HOH B 1 401 19 HOH HOH . 
CA 4 HOH B 2 402 1 HOH HOH . 
CA 4 HOH B 3 403 32 HOH HOH . 
CA 4 HOH B 4 404 18 HOH HOH . 
CA 4 HOH B 5 405 24 HOH HOH . 
CA 4 HOH B 6 406 9 HOH HOH . 
CA 4 HOH B 7 407 10 HOH HOH . 
DA 4 HOH A 1 401 22 HOH HOH . 
EA 4 HOH F 1 401 31 HOH HOH . 
FA 4 HOH E 1 401 8 HOH HOH . 
FA 4 HOH E 2 402 21 HOH HOH . 
FA 4 HOH E 3 403 20 HOH HOH . 
FA 4 HOH E 4 404 2 HOH HOH . 
FA 4 HOH E 5 405 36 HOH HOH . 
FA 4 HOH E 6 406 34 HOH HOH . 
GA 4 HOH D 1 401 7 HOH HOH . 
GA 4 HOH D 2 402 41 HOH HOH . 
GA 4 HOH D 3 403 35 HOH HOH . 
GA 4 HOH D 4 404 40 HOH HOH . 
GA 4 HOH D 5 405 30 HOH HOH . 
GA 4 HOH D 6 406 42 HOH HOH . 
HA 4 HOH C 1 401 43 HOH HOH . 
HA 4 HOH C 2 402 6 HOH HOH . 
HA 4 HOH C 3 403 39 HOH HOH . 
HA 4 HOH C 4 404 38 HOH HOH . 
IA 4 HOH I 1 401 33 HOH HOH . 
IA 4 HOH I 2 402 4 HOH HOH . 
IA 4 HOH I 3 403 11 HOH HOH . 
JA 4 HOH J 1 401 16 HOH HOH . 
JA 4 HOH J 2 402 15 HOH HOH . 
JA 4 HOH J 3 403 17 HOH HOH . 
KA 4 HOH L 1 401 37 HOH HOH . 
LA 4 HOH G 1 401 29 HOH HOH . 
LA 4 HOH G 2 402 28 HOH HOH . 
LA 4 HOH G 3 403 27 HOH HOH . 
LA 4 HOH G 4 404 5 HOH HOH . 
MA 4 HOH H 1 401 3 HOH HOH . 
MA 4 HOH H 2 402 23 HOH HOH . 
MA 4 HOH H 3 403 14 HOH HOH . 
MA 4 HOH H 4 404 13 HOH HOH . 
MA 4 HOH H 5 405 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . S 3 38.436 3.069 71.528 1 27.75 ? PA UTP 301 C 1 
HETATM 2 O O1A UTP . . . S 3 38.912 2.34 70.351 1 28.43 ? O1A UTP 301 C 1 
HETATM 3 O O2A UTP . . . S 3 39.154 4.358 71.487 1 35.79 ? O2A UTP 301 C 1 
HETATM 4 O O3A UTP . . . S 3 38.874 2.194 72.863 1 26.36 ? O3A UTP 301 C 1 
HETATM 5 O O5' UTP . . . S 3 36.809 3.331 71.422 1 23.9 ? O5' UTP 301 C 1 
HETATM 6 P PB UTP . . . S 3 37.874 1.039 73.457 1 25.09 ? PB UTP 301 C 1 
HETATM 7 O O1B UTP . . . S 3 37.255 1.528 74.692 1 26.3 ? O1B UTP 301 C 1 
HETATM 8 O O2B UTP . . . S 3 36.724 0.83 72.571 1 36.5 ? O2B UTP 301 C 1 
HETATM 9 O O3B UTP . . . S 3 38.612 -0.433 73.597 1 42.32 ? O3B UTP 301 C 1 
HETATM 10 P PG UTP . . . S 3 40.019 -0.643 74.405 1 36.1 ? PG UTP 301 C 1 
HETATM 11 O O1G UTP . . . S 3 40.624 0.667 74.682 1 29.96 ? O1G UTP 301 C 1 
HETATM 12 O O2G UTP . . . S 3 41.012 -1.422 73.643 1 34.19 ? O2G UTP 301 C 1 
HETATM 13 O O3G UTP . . . S 3 39.846 -1.29 75.717 1 45.4 ? O3G UTP 301 C 1 
HETATM 14 C C5' UTP . . . S 3 36.217 4.269 72.272 1 16.26 ? C5' UTP 301 C 1 
HETATM 15 C C4' UTP . . . S 3 34.889 4.693 71.719 1 22.68 ? C4' UTP 301 C 1 
HETATM 16 O O4' UTP . . . S 3 35.092 5.307 70.425 1 26.03 ? O4' UTP 301 C 1 
HETATM 17 C C1' UTP . . . S 3 34.046 4.845 69.52 1 24.61 ? C1' UTP 301 C 1 
HETATM 18 C C2' UTP . . . S 3 33.813 3.44 69.988 1 25.29 ? C2' UTP 301 C 1 
HETATM 19 O O2' UTP . . . S 3 32.503 2.936 69.674 1 30.53 ? O2' UTP 301 C 1 
HETATM 20 C C3' UTP . . . S 3 33.947 3.552 71.46 1 23 ? C3' UTP 301 C 1 
HETATM 21 O O3' UTP . . . S 3 32.649 3.844 71.992 1 25.69 ? O3' UTP 301 C 1 
HETATM 22 N N1 UTP . . . S 3 34.493 4.921 68.168 1 14.3 ? N1 UTP 301 C 1 
HETATM 23 C C6 UTP . . . S 3 35.516 3.973 67.757 1 8.16 ? C6 UTP 301 C 1 
HETATM 24 C C2 UTP . . . S 3 34.021 5.905 67.205 1 13.48 ? C2 UTP 301 C 1 
HETATM 25 O O2 UTP . . . S 3 33.207 6.728 67.493 1 9.32 ? O2 UTP 301 C 1 
HETATM 26 N N3 UTP . . . S 3 34.552 5.889 65.878 1 17.83 ? N3 UTP 301 C 1 
HETATM 27 C C4 UTP . . . S 3 35.539 4.95 65.477 1 12.07 ? C4 UTP 301 C 1 
HETATM 28 O O4 UTP . . . S 3 35.998 4.895 64.375 1 15.09 ? O4 UTP 301 C 1 
HETATM 29 C C5 UTP . . . S 3 36.007 3.968 66.512 1 11.22 ? C5 UTP 301 C 1 
#
_model_server_stats.io_time_ms              180 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#