data_7BLW # _model_server_result.job_id 7PHtZRdBDt6r6KLPUlBIRw _model_server_result.datetime_utc '2024-11-08 22:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7blw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7BLW # _exptl.entry_id 7BLW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.338 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E,4E)-5-(2H-1,3-benzodioxol-5-yl)-1-(piperidin-1-yl)penta-2,4-dien-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BLW _cell.length_a 60.5 _cell.length_b 72.94 _cell.length_c 79.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BLW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C17 H19 N O3' _chem_comp.formula_weight 285.338 _chem_comp.id AYR _chem_comp.mon_nstd_flag . _chem_comp.name (2E,4E)-5-(2H-1,3-benzodioxol-5-yl)-1-(piperidin-1-yl)penta-2,4-dien-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 AYR doub 70 n y C7 C2 AYR sing 71 n y O15 C14 AYR doub 72 n n O10 C6 AYR sing 73 n n O10 C9 AYR sing 74 n n C1 C2 AYR sing 75 n n C1 C11 AYR doub 76 e n C6 C5 AYR sing 77 n y C2 C3 AYR doub 78 n y C12 C11 AYR sing 79 n n C12 C13 AYR doub 80 e n C9 O8 AYR sing 81 n n C14 C13 AYR sing 82 n n C14 N16 AYR sing 83 n n C21 C20 AYR sing 84 n n C21 N16 AYR sing 85 n n C5 O8 AYR sing 86 n n C5 C4 AYR doub 87 n y C3 C4 AYR sing 88 n y C20 C19 AYR sing 89 n n N16 C17 AYR sing 90 n n C19 C18 AYR sing 91 n n C17 C18 AYR sing 92 n n C1 H1 AYR sing 93 n n C3 H2 AYR sing 94 n n C4 H3 AYR sing 95 n n C7 H4 AYR sing 96 n n C9 H5 AYR sing 97 n n C11 H6 AYR sing 98 n n C12 H7 AYR sing 99 n n C13 H8 AYR sing 100 n n C17 H9 AYR sing 101 n n C17 H10 AYR sing 102 n n C18 H11 AYR sing 103 n n C18 H12 AYR sing 104 n n C19 H13 AYR sing 105 n n C19 H14 AYR sing 106 n n C20 H15 AYR sing 107 n n C20 H16 AYR sing 108 n n C21 H17 AYR sing 109 n n C21 H18 AYR sing 110 n n C9 H19 AYR sing 111 n n # _atom_sites.entry_id 7BLW _atom_sites.fract_transf_matrix[1][1] 0.016529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 4 DMS A 1 504 1601 DMS DMS . F 5 AYR A 1 505 1801 AYR XXX . G 2 SO4 A 1 506 8 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 2 SO4 A 1 508 13 SO4 SO4 . J 2 SO4 A 1 509 14 SO4 SO4 . K 6 HOH A 1 601 62 HOH HOH . K 6 HOH A 2 602 1047 HOH HOH . K 6 HOH A 3 603 1033 HOH HOH . K 6 HOH A 4 604 60 HOH HOH . K 6 HOH A 5 605 25 HOH HOH . K 6 HOH A 6 606 1118 HOH HOH . K 6 HOH A 7 607 1097 HOH HOH . K 6 HOH A 8 608 23 HOH HOH . K 6 HOH A 9 609 1027 HOH HOH . K 6 HOH A 10 610 1196 HOH HOH . K 6 HOH A 11 611 1149 HOH HOH . K 6 HOH A 12 612 1003 HOH HOH . K 6 HOH A 13 613 1046 HOH HOH . K 6 HOH A 14 614 36 HOH HOH . K 6 HOH A 15 615 1036 HOH HOH . K 6 HOH A 16 616 1001 HOH HOH . K 6 HOH A 17 617 1052 HOH HOH . K 6 HOH A 18 618 1197 HOH HOH . K 6 HOH A 19 619 1070 HOH HOH . K 6 HOH A 20 620 1045 HOH HOH . K 6 HOH A 21 621 1048 HOH HOH . K 6 HOH A 22 622 1082 HOH HOH . K 6 HOH A 23 623 1008 HOH HOH . K 6 HOH A 24 624 57 HOH HOH . K 6 HOH A 25 625 1031 HOH HOH . K 6 HOH A 26 626 1040 HOH HOH . K 6 HOH A 27 627 1023 HOH HOH . K 6 HOH A 28 628 1019 HOH HOH . K 6 HOH A 29 629 59 HOH HOH . K 6 HOH A 30 630 1059 HOH HOH . K 6 HOH A 31 631 1012 HOH HOH . K 6 HOH A 32 632 1058 HOH HOH . K 6 HOH A 33 633 1018 HOH HOH . K 6 HOH A 34 634 1091 HOH HOH . K 6 HOH A 35 635 1004 HOH HOH . K 6 HOH A 36 636 1043 HOH HOH . K 6 HOH A 37 637 12 HOH HOH . K 6 HOH A 38 638 1190 HOH HOH . K 6 HOH A 39 639 1073 HOH HOH . K 6 HOH A 40 640 1057 HOH HOH . K 6 HOH A 41 641 1029 HOH HOH . K 6 HOH A 42 642 64 HOH HOH . K 6 HOH A 43 643 61 HOH HOH . K 6 HOH A 44 644 22 HOH HOH . K 6 HOH A 45 645 1051 HOH HOH . K 6 HOH A 46 646 1016 HOH HOH . K 6 HOH A 47 647 1068 HOH HOH . K 6 HOH A 48 648 1145 HOH HOH . K 6 HOH A 49 649 1114 HOH HOH . K 6 HOH A 50 650 1007 HOH HOH . K 6 HOH A 51 651 1037 HOH HOH . K 6 HOH A 52 652 1093 HOH HOH . K 6 HOH A 53 653 1038 HOH HOH . K 6 HOH A 54 654 11 HOH HOH . K 6 HOH A 55 655 56 HOH HOH . K 6 HOH A 56 656 1148 HOH HOH . K 6 HOH A 57 657 1011 HOH HOH . K 6 HOH A 58 658 1065 HOH HOH . K 6 HOH A 59 659 28 HOH HOH . K 6 HOH A 60 660 27 HOH HOH . K 6 HOH A 61 661 17 HOH HOH . K 6 HOH A 62 662 1006 HOH HOH . K 6 HOH A 63 663 1109 HOH HOH . K 6 HOH A 64 664 1062 HOH HOH . K 6 HOH A 65 665 1002 HOH HOH . K 6 HOH A 66 666 1026 HOH HOH . K 6 HOH A 67 667 1005 HOH HOH . K 6 HOH A 68 668 1015 HOH HOH . K 6 HOH A 69 669 4 HOH HOH . K 6 HOH A 70 670 1063 HOH HOH . K 6 HOH A 71 671 1064 HOH HOH . K 6 HOH A 72 672 58 HOH HOH . K 6 HOH A 73 673 1071 HOH HOH . K 6 HOH A 74 674 1030 HOH HOH . K 6 HOH A 75 675 1041 HOH HOH . K 6 HOH A 76 676 1017 HOH HOH . K 6 HOH A 77 677 1078 HOH HOH . K 6 HOH A 78 678 1074 HOH HOH . K 6 HOH A 79 679 1067 HOH HOH . K 6 HOH A 80 680 1035 HOH HOH . K 6 HOH A 81 681 1013 HOH HOH . K 6 HOH A 82 682 29 HOH HOH . K 6 HOH A 83 683 1039 HOH HOH . K 6 HOH A 84 684 1014 HOH HOH . K 6 HOH A 85 685 63 HOH HOH . K 6 HOH A 86 686 1077 HOH HOH . K 6 HOH A 87 687 30 HOH HOH . K 6 HOH A 88 688 1042 HOH HOH . K 6 HOH A 89 689 1142 HOH HOH . K 6 HOH A 90 690 1049 HOH HOH . K 6 HOH A 91 691 65 HOH HOH . K 6 HOH A 92 692 1079 HOH HOH . K 6 HOH A 93 693 1115 HOH HOH . K 6 HOH A 94 694 1010 HOH HOH . K 6 HOH A 95 695 1153 HOH HOH . K 6 HOH A 96 696 1152 HOH HOH . K 6 HOH A 97 697 1112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AYR . . . F 5 3.193 -4.253 5.724 1 38.98 ? C1 AYR 505 A 1 HETATM 2 C C2 AYR . . . F 5 1.975 -5.148 5.723 1 63.22 ? C2 AYR 505 A 1 HETATM 3 C C3 AYR . . . F 5 1.984 -6.301 6.503 1 37.05 ? C3 AYR 505 A 1 HETATM 4 C C4 AYR . . . F 5 0.877 -7.135 6.497 1 43.19 ? C4 AYR 505 A 1 HETATM 5 C C5 AYR . . . F 5 -0.234 -6.8 5.69 1 32.01 ? C5 AYR 505 A 1 HETATM 6 C C6 AYR . . . F 5 -0.223 -5.67 4.917 1 34.43 ? C6 AYR 505 A 1 HETATM 7 C C7 AYR . . . F 5 0.898 -4.815 4.918 1 29.84 ? C7 AYR 505 A 1 HETATM 8 O O8 AYR . . . F 5 -1.47 -7.449 5.481 1 65.61 ? O8 AYR 505 A 1 HETATM 9 C C9 AYR . . . F 5 -1.953 -6.915 4.279 1 45.63 ? C9 AYR 505 A 1 HETATM 10 O O10 AYR . . . F 5 -1.448 -5.607 4.227 1 33.01 ? O10 AYR 505 A 1 HETATM 11 C C11 AYR . . . F 5 4.359 -4.85 5.779 1 41.37 ? C11 AYR 505 A 1 HETATM 12 C C12 AYR . . . F 5 5.566 -3.936 5.744 1 31.05 ? C12 AYR 505 A 1 HETATM 13 C C13 AYR . . . F 5 6.769 -4.427 5.577 1 64.88 ? C13 AYR 505 A 1 HETATM 14 C C14 AYR . . . F 5 7.847 -3.364 5.53 1 78.91 ? C14 AYR 505 A 1 HETATM 15 O O15 AYR . . . F 5 7.517 -2.248 5.321 1 20.67 ? O15 AYR 505 A 1 HETATM 16 N N16 AYR . . . F 5 9.241 -3.728 5.677 1 29.3 ? N16 AYR 505 A 1 HETATM 17 C C17 AYR . . . F 5 9.651 -5.162 5.897 1 42.05 ? C17 AYR 505 A 1 HETATM 18 C C18 AYR . . . F 5 11.084 -5.573 5.533 1 76.94 ? C18 AYR 505 A 1 HETATM 19 C C19 AYR . . . F 5 11.917 -4.475 5.011 1 54.25 ? C19 AYR 505 A 1 HETATM 20 C C20 AYR . . . F 5 11.749 -3.29 5.865 1 51.42 ? C20 AYR 505 A 1 HETATM 21 C C21 AYR . . . F 5 10.354 -2.721 5.617 1 30.76 ? C21 AYR 505 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #