data_7BLY
#
_model_server_result.job_id            fTxEUtnZk2kyH4qvJvRvzg 
_model_server_result.datetime_utc      '2024-12-01 07:27:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bly 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7BLY 
#
_exptl.entry_id    7BLY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.046 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BLY 
_cell.length_a            119.874 
_cell.length_b            119.874 
_cell.length_c            119.874 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BLY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        207 
_symmetry.space_group_name_Hall    'P 4 2 3' 
_symmetry.space_group_name_H-M     'P 4 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 226 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A OD1 ASP 48 A ASP 48 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc2 A NE2 HIS 97 A HIS 97 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc3 A NE2 HIS 101 A HIS 101 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C O6 MLI . A MLI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc5 B ZN ZN . A ZN 301 1_555 C O7 MLI . A MLI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc6 B ZN ZN . A ZN 301 1_555 E O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
#
_chem_comp.formula           'C3 H2 O4 -2' 
_chem_comp.formula_weight    102.046 
_chem_comp.id                MLI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MLI sing 237 n n 
C1 C3 MLI sing 238 n n 
C1 H11 MLI sing 239 n n 
C1 H12 MLI sing 240 n n 
C2 O6 MLI doub 241 n n 
C2 O7 MLI sing 242 n n 
C3 O8 MLI doub 243 n n 
C3 O9 MLI sing 244 n n 
#
_atom_sites.entry_id                     7BLY 
_atom_sites.fract_transf_matrix[1][1]    0.008342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008342 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 240 ZN ZN . 
C 3 MLI A 1 302 241 MLI MLI . 
D 4 CL A 1 303 242 CL CL . 
E 5 HOH A 1 401 61 HOH HOH . 
E 5 HOH A 2 402 192 HOH HOH . 
E 5 HOH A 3 403 109 HOH HOH . 
E 5 HOH A 4 404 197 HOH HOH . 
E 5 HOH A 5 405 130 HOH HOH . 
E 5 HOH A 6 406 140 HOH HOH . 
E 5 HOH A 7 407 174 HOH HOH . 
E 5 HOH A 8 408 126 HOH HOH . 
E 5 HOH A 9 409 78 HOH HOH . 
E 5 HOH A 10 410 131 HOH HOH . 
E 5 HOH A 11 411 199 HOH HOH . 
E 5 HOH A 12 412 84 HOH HOH . 
E 5 HOH A 13 413 143 HOH HOH . 
E 5 HOH A 14 414 102 HOH HOH . 
E 5 HOH A 15 415 43 HOH HOH . 
E 5 HOH A 16 416 129 HOH HOH . 
E 5 HOH A 17 417 58 HOH HOH . 
E 5 HOH A 18 418 93 HOH HOH . 
E 5 HOH A 19 419 5 HOH HOH . 
E 5 HOH A 20 420 127 HOH HOH . 
E 5 HOH A 21 421 49 HOH HOH . 
E 5 HOH A 22 422 11 HOH HOH . 
E 5 HOH A 23 423 234 HOH HOH . 
E 5 HOH A 24 424 19 HOH HOH . 
E 5 HOH A 25 425 125 HOH HOH . 
E 5 HOH A 26 426 10 HOH HOH . 
E 5 HOH A 27 427 29 HOH HOH . 
E 5 HOH A 28 428 8 HOH HOH . 
E 5 HOH A 29 429 72 HOH HOH . 
E 5 HOH A 30 430 56 HOH HOH . 
E 5 HOH A 31 431 42 HOH HOH . 
E 5 HOH A 32 432 28 HOH HOH . 
E 5 HOH A 33 433 165 HOH HOH . 
E 5 HOH A 34 434 90 HOH HOH . 
E 5 HOH A 35 435 164 HOH HOH . 
E 5 HOH A 36 436 22 HOH HOH . 
E 5 HOH A 37 437 119 HOH HOH . 
E 5 HOH A 38 438 91 HOH HOH . 
E 5 HOH A 39 439 40 HOH HOH . 
E 5 HOH A 40 440 70 HOH HOH . 
E 5 HOH A 41 441 122 HOH HOH . 
E 5 HOH A 42 442 41 HOH HOH . 
E 5 HOH A 43 443 36 HOH HOH . 
E 5 HOH A 44 444 46 HOH HOH . 
E 5 HOH A 45 445 7 HOH HOH . 
E 5 HOH A 46 446 62 HOH HOH . 
E 5 HOH A 47 447 100 HOH HOH . 
E 5 HOH A 48 448 31 HOH HOH . 
E 5 HOH A 49 449 123 HOH HOH . 
E 5 HOH A 50 450 99 HOH HOH . 
E 5 HOH A 51 451 177 HOH HOH . 
E 5 HOH A 52 452 71 HOH HOH . 
E 5 HOH A 53 453 107 HOH HOH . 
E 5 HOH A 54 454 55 HOH HOH . 
E 5 HOH A 55 455 35 HOH HOH . 
E 5 HOH A 56 456 20 HOH HOH . 
E 5 HOH A 57 457 63 HOH HOH . 
E 5 HOH A 58 458 48 HOH HOH . 
E 5 HOH A 59 459 16 HOH HOH . 
E 5 HOH A 60 460 170 HOH HOH . 
E 5 HOH A 61 461 6 HOH HOH . 
E 5 HOH A 62 462 134 HOH HOH . 
E 5 HOH A 63 463 50 HOH HOH . 
E 5 HOH A 64 464 81 HOH HOH . 
E 5 HOH A 65 465 117 HOH HOH . 
E 5 HOH A 66 466 59 HOH HOH . 
E 5 HOH A 67 467 18 HOH HOH . 
E 5 HOH A 68 468 80 HOH HOH . 
E 5 HOH A 69 469 185 HOH HOH . 
E 5 HOH A 70 470 86 HOH HOH . 
E 5 HOH A 71 471 66 HOH HOH . 
E 5 HOH A 72 472 118 HOH HOH . 
E 5 HOH A 73 473 115 HOH HOH . 
E 5 HOH A 74 474 132 HOH HOH . 
E 5 HOH A 75 475 1 HOH HOH . 
E 5 HOH A 76 476 44 HOH HOH . 
E 5 HOH A 77 477 9 HOH HOH . 
E 5 HOH A 78 478 173 HOH HOH . 
E 5 HOH A 79 479 17 HOH HOH . 
E 5 HOH A 80 480 158 HOH HOH . 
E 5 HOH A 81 481 142 HOH HOH . 
E 5 HOH A 82 482 57 HOH HOH . 
E 5 HOH A 83 483 51 HOH HOH . 
E 5 HOH A 84 484 3 HOH HOH . 
E 5 HOH A 85 485 195 HOH HOH . 
E 5 HOH A 86 486 69 HOH HOH . 
E 5 HOH A 87 487 39 HOH HOH . 
E 5 HOH A 88 488 166 HOH HOH . 
E 5 HOH A 89 489 82 HOH HOH . 
E 5 HOH A 90 490 188 HOH HOH . 
E 5 HOH A 91 491 214 HOH HOH . 
E 5 HOH A 92 492 106 HOH HOH . 
E 5 HOH A 93 493 168 HOH HOH . 
E 5 HOH A 94 494 154 HOH HOH . 
E 5 HOH A 95 495 147 HOH HOH . 
E 5 HOH A 96 496 224 HOH HOH . 
E 5 HOH A 97 497 64 HOH HOH . 
E 5 HOH A 98 498 23 HOH HOH . 
E 5 HOH A 99 499 4 HOH HOH . 
E 5 HOH A 100 500 2 HOH HOH . 
E 5 HOH A 101 501 21 HOH HOH . 
E 5 HOH A 102 502 25 HOH HOH . 
E 5 HOH A 103 503 53 HOH HOH . 
E 5 HOH A 104 504 87 HOH HOH . 
E 5 HOH A 105 505 179 HOH HOH . 
E 5 HOH A 106 506 151 HOH HOH . 
E 5 HOH A 107 507 27 HOH HOH . 
E 5 HOH A 108 508 54 HOH HOH . 
E 5 HOH A 109 509 136 HOH HOH . 
E 5 HOH A 110 510 47 HOH HOH . 
E 5 HOH A 111 511 121 HOH HOH . 
E 5 HOH A 112 512 111 HOH HOH . 
E 5 HOH A 113 513 171 HOH HOH . 
E 5 HOH A 114 514 95 HOH HOH . 
E 5 HOH A 115 515 38 HOH HOH . 
E 5 HOH A 116 516 148 HOH HOH . 
E 5 HOH A 117 517 26 HOH HOH . 
E 5 HOH A 118 518 12 HOH HOH . 
E 5 HOH A 119 519 89 HOH HOH . 
E 5 HOH A 120 520 108 HOH HOH . 
E 5 HOH A 121 521 15 HOH HOH . 
E 5 HOH A 122 522 155 HOH HOH . 
E 5 HOH A 123 523 32 HOH HOH . 
E 5 HOH A 124 524 68 HOH HOH . 
E 5 HOH A 125 525 110 HOH HOH . 
E 5 HOH A 126 526 114 HOH HOH . 
E 5 HOH A 127 527 33 HOH HOH . 
E 5 HOH A 128 528 14 HOH HOH . 
E 5 HOH A 129 529 236 HOH HOH . 
E 5 HOH A 130 530 77 HOH HOH . 
E 5 HOH A 131 531 83 HOH HOH . 
E 5 HOH A 132 532 205 HOH HOH . 
E 5 HOH A 133 533 65 HOH HOH . 
E 5 HOH A 134 534 24 HOH HOH . 
E 5 HOH A 135 535 144 HOH HOH . 
E 5 HOH A 136 536 88 HOH HOH . 
E 5 HOH A 137 537 13 HOH HOH . 
E 5 HOH A 138 538 73 HOH HOH . 
E 5 HOH A 139 539 79 HOH HOH . 
E 5 HOH A 140 540 157 HOH HOH . 
E 5 HOH A 141 541 201 HOH HOH . 
E 5 HOH A 142 542 45 HOH HOH . 
E 5 HOH A 143 543 105 HOH HOH . 
E 5 HOH A 144 544 98 HOH HOH . 
E 5 HOH A 145 545 186 HOH HOH . 
E 5 HOH A 146 546 30 HOH HOH . 
E 5 HOH A 147 547 230 HOH HOH . 
E 5 HOH A 148 548 176 HOH HOH . 
E 5 HOH A 149 549 231 HOH HOH . 
E 5 HOH A 150 550 76 HOH HOH . 
E 5 HOH A 151 551 225 HOH HOH . 
E 5 HOH A 152 552 103 HOH HOH . 
E 5 HOH A 153 553 37 HOH HOH . 
E 5 HOH A 154 554 96 HOH HOH . 
E 5 HOH A 155 555 152 HOH HOH . 
E 5 HOH A 156 556 52 HOH HOH . 
E 5 HOH A 157 557 162 HOH HOH . 
E 5 HOH A 158 558 163 HOH HOH . 
E 5 HOH A 159 559 60 HOH HOH . 
E 5 HOH A 160 560 113 HOH HOH . 
E 5 HOH A 161 561 85 HOH HOH . 
E 5 HOH A 162 562 149 HOH HOH . 
E 5 HOH A 163 563 175 HOH HOH . 
E 5 HOH A 164 564 215 HOH HOH . 
E 5 HOH A 165 565 150 HOH HOH . 
E 5 HOH A 166 566 139 HOH HOH . 
E 5 HOH A 167 567 75 HOH HOH . 
E 5 HOH A 168 568 92 HOH HOH . 
E 5 HOH A 169 569 204 HOH HOH . 
E 5 HOH A 170 570 156 HOH HOH . 
E 5 HOH A 171 571 196 HOH HOH . 
E 5 HOH A 172 572 161 HOH HOH . 
E 5 HOH A 173 573 210 HOH HOH . 
E 5 HOH A 174 574 34 HOH HOH . 
E 5 HOH A 175 575 189 HOH HOH . 
E 5 HOH A 176 576 128 HOH HOH . 
E 5 HOH A 177 577 211 HOH HOH . 
E 5 HOH A 178 578 74 HOH HOH . 
E 5 HOH A 179 579 232 HOH HOH . 
E 5 HOH A 180 580 141 HOH HOH . 
E 5 HOH A 181 581 160 HOH HOH . 
E 5 HOH A 182 582 229 HOH HOH . 
E 5 HOH A 183 583 217 HOH HOH . 
E 5 HOH A 184 584 172 HOH HOH . 
E 5 HOH A 185 585 223 HOH HOH . 
E 5 HOH A 186 586 235 HOH HOH . 
E 5 HOH A 187 587 202 HOH HOH . 
E 5 HOH A 188 588 213 HOH HOH . 
E 5 HOH A 189 589 104 HOH HOH . 
E 5 HOH A 190 590 178 HOH HOH . 
E 5 HOH A 191 591 208 HOH HOH . 
E 5 HOH A 192 592 124 HOH HOH . 
E 5 HOH A 193 593 184 HOH HOH . 
E 5 HOH A 194 594 190 HOH HOH . 
E 5 HOH A 195 595 203 HOH HOH . 
E 5 HOH A 196 596 219 HOH HOH . 
E 5 HOH A 197 597 206 HOH HOH . 
E 5 HOH A 198 598 216 HOH HOH . 
E 5 HOH A 199 599 218 HOH HOH . 
E 5 HOH A 200 600 138 HOH HOH . 
E 5 HOH A 201 601 167 HOH HOH . 
E 5 HOH A 202 602 233 HOH HOH . 
E 5 HOH A 203 603 193 HOH HOH . 
E 5 HOH A 204 604 194 HOH HOH . 
E 5 HOH A 205 605 169 HOH HOH . 
E 5 HOH A 206 606 191 HOH HOH . 
E 5 HOH A 207 607 159 HOH HOH . 
E 5 HOH A 208 608 182 HOH HOH . 
E 5 HOH A 209 609 222 HOH HOH . 
E 5 HOH A 210 610 120 HOH HOH . 
E 5 HOH A 211 611 146 HOH HOH . 
E 5 HOH A 212 612 227 HOH HOH . 
E 5 HOH A 213 613 212 HOH HOH . 
E 5 HOH A 214 614 237 HOH HOH . 
E 5 HOH A 215 615 209 HOH HOH . 
E 5 HOH A 216 616 101 HOH HOH . 
E 5 HOH A 217 617 200 HOH HOH . 
E 5 HOH A 218 618 180 HOH HOH . 
E 5 HOH A 219 619 94 HOH HOH . 
E 5 HOH A 220 620 137 HOH HOH . 
E 5 HOH A 221 621 181 HOH HOH . 
E 5 HOH A 222 622 226 HOH HOH . 
E 5 HOH A 223 623 133 HOH HOH . 
E 5 HOH A 224 624 187 HOH HOH . 
E 5 HOH A 225 625 207 HOH HOH . 
E 5 HOH A 226 626 220 HOH HOH . 
E 5 HOH A 227 627 67 HOH HOH . 
E 5 HOH A 228 628 135 HOH HOH . 
E 5 HOH A 229 629 97 HOH HOH . 
E 5 HOH A 230 630 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLI . . . C 3 23.03 53.587 -19.886 1 24.28 ? C1 MLI 302 A 1 
HETATM 2 C C2 MLI . . . C 3 23.486 52.656 -21.011 1 30.41 ? C2 MLI 302 A 1 
HETATM 3 C C3 MLI . . . C 3 23.267 55.023 -20.358 1 38.68 ? C3 MLI 302 A 1 
HETATM 4 O O6 MLI . . . C 3 22.652 52.336 -21.893 1 19.52 ? O6 MLI 302 A 1 
HETATM 5 O O7 MLI . . . C 3 24.687 52.241 -21.071 1 23.62 ? O7 MLI 302 A 1 
HETATM 6 O O8 MLI . . . C 3 24.241 55.286 -21.12 1 31.88 ? O8 MLI 302 A 1 
HETATM 7 O O9 MLI . . . C 3 22.489 55.944 -19.987 1 34.03 ? O9 MLI 302 A 1 
#
_model_server_stats.io_time_ms              93 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#