data_7BM3 # _model_server_result.job_id utlaXDeuZQppNo-96oZz8w _model_server_result.datetime_utc '2024-11-28 09:52:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":517}' # _entry.id 7BM3 # _exptl.entry_id 7BM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.315 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-(3,4-dihydroxyphenyl)-2-{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}propanoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BM3 _cell.length_a 60.14 _cell.length_b 73.8 _cell.length_c 79.04 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C18 H16 O8' _chem_comp.formula_weight 360.315 _chem_comp.id ROA _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-(3,4-dihydroxyphenyl)-2-{[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Rosmarinic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAU CAV ROA doub 316 n y CAU CAS ROA sing 317 n y CAU HAU ROA sing 318 n n CAV OAY ROA sing 319 n n CAV CAW ROA sing 320 n y OAY HOAY ROA sing 321 n n CAW OAZ ROA sing 322 n n CAW CAX ROA doub 323 n y OAZ HOAZ ROA sing 324 n n CAX CAT ROA sing 325 n y CAX HAX ROA sing 326 n n CAT CAS ROA doub 327 n y CAT HAT ROA sing 328 n n CAS CAO ROA sing 329 n n CAO CAN ROA sing 330 n n CAO HAO ROA sing 331 n n CAO HAOA ROA sing 332 n n CAN CAP ROA sing 333 n n CAN OAM ROA sing 334 n n CAN HAN ROA sing 335 n n CAP OAR ROA doub 336 n n CAP OAQ ROA sing 337 n n OAQ H18 ROA sing 338 n n OAM CAK ROA sing 339 n n CAK OAL ROA doub 340 n n CAK CAJ ROA sing 341 n n CAJ CAI ROA doub 342 e n CAJ HAJ ROA sing 343 n n CAI CAC ROA sing 344 n n CAI HAI ROA sing 345 n n CAC CAD ROA doub 346 n y CAC CAA ROA sing 347 n y CAD CAE ROA sing 348 n y CAD HAD ROA sing 349 n n CAE OAG ROA sing 350 n n CAE CAF ROA doub 351 n y OAG HOAG ROA sing 352 n n CAF OAH ROA sing 353 n n CAF CAB ROA sing 354 n y OAH HOAH ROA sing 355 n n CAB CAA ROA doub 356 n y CAB HAB ROA sing 357 n n CAA HAA ROA sing 358 n n # _atom_sites.entry_id 7BM3 _atom_sites.fract_transf_matrix[1][1] 0.016628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 2 SO4 A 1 503 8 SO4 SO4 . E 2 SO4 A 1 504 9 SO4 SO4 . F 2 SO4 A 1 505 10 SO4 SO4 . G 2 SO4 A 1 506 13 SO4 SO4 . H 2 SO4 A 1 507 14 SO4 SO4 . I 2 SO4 A 1 508 15 SO4 SO4 . J 2 SO4 A 1 509 16 SO4 SO4 . K 2 SO4 A 1 510 17 SO4 SO4 . L 4 EDO A 1 511 8 EDO EDO . M 4 EDO A 1 512 10 EDO EDO . N 4 EDO A 1 513 11 EDO EDO . O 4 EDO A 1 514 12 EDO EDO . P 5 ROA A 1 515 1 ROA DRG . Q 5 ROA A 1 516 3 ROA DRG . R 5 ROA A 1 517 4 ROA DRG . S 6 HOH A 1 601 1050 HOH HOH . S 6 HOH A 2 602 25 HOH HOH . S 6 HOH A 3 603 1097 HOH HOH . S 6 HOH A 4 604 63 HOH HOH . S 6 HOH A 5 605 1193 HOH HOH . S 6 HOH A 6 606 34 HOH HOH . S 6 HOH A 7 607 36 HOH HOH . S 6 HOH A 8 608 1047 HOH HOH . S 6 HOH A 9 609 1197 HOH HOH . S 6 HOH A 10 610 23 HOH HOH . S 6 HOH A 11 611 1045 HOH HOH . S 6 HOH A 12 612 1008 HOH HOH . S 6 HOH A 13 613 60 HOH HOH . S 6 HOH A 14 614 1027 HOH HOH . S 6 HOH A 15 615 1148 HOH HOH . S 6 HOH A 16 616 1123 HOH HOH . S 6 HOH A 17 617 1082 HOH HOH . S 6 HOH A 18 618 1004 HOH HOH . S 6 HOH A 19 619 1070 HOH HOH . S 6 HOH A 20 620 1035 HOH HOH . S 6 HOH A 21 621 1001 HOH HOH . S 6 HOH A 22 622 1031 HOH HOH . S 6 HOH A 23 623 1040 HOH HOH . S 6 HOH A 24 624 1091 HOH HOH . S 6 HOH A 25 625 1048 HOH HOH . S 6 HOH A 26 626 54 HOH HOH . S 6 HOH A 27 627 1003 HOH HOH . S 6 HOH A 28 628 1154 HOH HOH . S 6 HOH A 29 629 1059 HOH HOH . S 6 HOH A 30 630 1033 HOH HOH . S 6 HOH A 31 631 1086 HOH HOH . S 6 HOH A 32 632 1018 HOH HOH . S 6 HOH A 33 633 1010 HOH HOH . S 6 HOH A 34 634 1063 HOH HOH . S 6 HOH A 35 635 1051 HOH HOH . S 6 HOH A 36 636 1029 HOH HOH . S 6 HOH A 37 637 1052 HOH HOH . S 6 HOH A 38 638 1087 HOH HOH . S 6 HOH A 39 639 1118 HOH HOH . S 6 HOH A 40 640 1036 HOH HOH . S 6 HOH A 41 641 1046 HOH HOH . S 6 HOH A 42 642 1016 HOH HOH . S 6 HOH A 43 643 48 HOH HOH . S 6 HOH A 44 644 1098 HOH HOH . S 6 HOH A 45 645 1058 HOH HOH . S 6 HOH A 46 646 11 HOH HOH . S 6 HOH A 47 647 1043 HOH HOH . S 6 HOH A 48 648 21 HOH HOH . S 6 HOH A 49 649 1019 HOH HOH . S 6 HOH A 50 650 70 HOH HOH . S 6 HOH A 51 651 56 HOH HOH . S 6 HOH A 52 652 1071 HOH HOH . S 6 HOH A 53 653 1054 HOH HOH . S 6 HOH A 54 654 22 HOH HOH . S 6 HOH A 55 655 1190 HOH HOH . S 6 HOH A 56 656 1007 HOH HOH . S 6 HOH A 57 657 61 HOH HOH . S 6 HOH A 58 658 1145 HOH HOH . S 6 HOH A 59 659 50 HOH HOH . S 6 HOH A 60 660 18 HOH HOH . S 6 HOH A 61 661 1074 HOH HOH . S 6 HOH A 62 662 1081 HOH HOH . S 6 HOH A 63 663 1149 HOH HOH . S 6 HOH A 64 664 1038 HOH HOH . S 6 HOH A 65 665 1062 HOH HOH . S 6 HOH A 66 666 1064 HOH HOH . S 6 HOH A 67 667 69 HOH HOH . S 6 HOH A 68 668 1114 HOH HOH . S 6 HOH A 69 669 1002 HOH HOH . S 6 HOH A 70 670 1057 HOH HOH . S 6 HOH A 71 671 7 HOH HOH . S 6 HOH A 72 672 71 HOH HOH . S 6 HOH A 73 673 1015 HOH HOH . S 6 HOH A 74 674 65 HOH HOH . S 6 HOH A 75 675 1037 HOH HOH . S 6 HOH A 76 676 1012 HOH HOH . S 6 HOH A 77 677 1073 HOH HOH . S 6 HOH A 78 678 1017 HOH HOH . S 6 HOH A 79 679 1085 HOH HOH . S 6 HOH A 80 680 1120 HOH HOH . S 6 HOH A 81 681 1093 HOH HOH . S 6 HOH A 82 682 1030 HOH HOH . S 6 HOH A 83 683 17 HOH HOH . S 6 HOH A 84 684 1106 HOH HOH . S 6 HOH A 85 685 1011 HOH HOH . S 6 HOH A 86 686 1065 HOH HOH . S 6 HOH A 87 687 1020 HOH HOH . S 6 HOH A 88 688 1079 HOH HOH . S 6 HOH A 89 689 1083 HOH HOH . S 6 HOH A 90 690 72 HOH HOH . S 6 HOH A 91 691 30 HOH HOH . S 6 HOH A 92 692 1005 HOH HOH . S 6 HOH A 93 693 1026 HOH HOH . S 6 HOH A 94 694 1014 HOH HOH . S 6 HOH A 95 695 1041 HOH HOH . S 6 HOH A 96 696 1152 HOH HOH . S 6 HOH A 97 697 1006 HOH HOH . S 6 HOH A 98 698 1109 HOH HOH . S 6 HOH A 99 699 4 HOH HOH . S 6 HOH A 100 700 1013 HOH HOH . S 6 HOH A 101 701 1068 HOH HOH . S 6 HOH A 102 702 1067 HOH HOH . S 6 HOH A 103 703 1077 HOH HOH . S 6 HOH A 104 704 1039 HOH HOH . S 6 HOH A 105 705 1191 HOH HOH . S 6 HOH A 106 706 1042 HOH HOH . S 6 HOH A 107 707 66 HOH HOH . S 6 HOH A 108 708 67 HOH HOH . S 6 HOH A 109 709 62 HOH HOH . S 6 HOH A 110 710 1022 HOH HOH . S 6 HOH A 111 711 1142 HOH HOH . S 6 HOH A 112 712 1140 HOH HOH . S 6 HOH A 113 713 1078 HOH HOH . S 6 HOH A 114 714 1049 HOH HOH . S 6 HOH A 115 715 1080 HOH HOH . S 6 HOH A 116 716 1115 HOH HOH . S 6 HOH A 117 717 1124 HOH HOH . S 6 HOH A 118 718 35 HOH HOH . S 6 HOH A 119 719 16 HOH HOH . S 6 HOH A 120 720 1155 HOH HOH . S 6 HOH A 121 721 64 HOH HOH . S 6 HOH A 122 722 5 HOH HOH . S 6 HOH A 123 723 1162 HOH HOH . S 6 HOH A 124 724 1112 HOH HOH . S 6 HOH A 125 725 51 HOH HOH . S 6 HOH A 126 726 42 HOH HOH . S 6 HOH A 127 727 1129 HOH HOH . S 6 HOH A 128 728 1153 HOH HOH . S 6 HOH A 129 729 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU ROA . . . R 5 15.589 -22.744 -10.07 1 28.75 ? CAU ROA 517 A 1 HETATM 2 C CAV ROA . . . R 5 15.646 -21.493 -10.658 1 28.13 ? CAV ROA 517 A 1 HETATM 3 O OAY ROA . . . R 5 14.509 -20.683 -10.61 1 26.33 ? OAY ROA 517 A 1 HETATM 4 C CAW ROA . . . R 5 16.81 -21.064 -11.289 1 29.8 ? CAW ROA 517 A 1 HETATM 5 O OAZ ROA . . . R 5 16.879 -19.796 -11.891 1 31.21 ? OAZ ROA 517 A 1 HETATM 6 C CAX ROA . . . R 5 17.918 -21.894 -11.337 1 32.08 ? CAX ROA 517 A 1 HETATM 7 C CAT ROA . . . R 5 17.855 -23.151 -10.758 1 35.92 ? CAT ROA 517 A 1 HETATM 8 C CAS ROA . . . R 5 16.698 -23.569 -10.117 1 32.26 ? CAS ROA 517 A 1 HETATM 9 C CAO ROA . . . R 5 16.637 -24.952 -9.479 1 33.21 ? CAO ROA 517 A 1 HETATM 10 C CAN ROA . . . R 5 16.114 -25.971 -10.487 1 35.93 ? CAN ROA 517 A 1 HETATM 11 C CAP ROA . . . R 5 15.559 -27.218 -9.807 1 36.12 ? CAP ROA 517 A 1 HETATM 12 O OAR ROA . . . R 5 16.283 -28.236 -9.634 1 37.35 -1 OAR ROA 517 A 1 HETATM 13 O OAQ ROA . . . R 5 14.364 -27.211 -9.419 1 45.59 ? OAQ ROA 517 A 1 HETATM 14 O OAM ROA . . . R 5 17.178 -26.329 -11.324 1 38.22 ? OAM ROA 517 A 1 HETATM 15 C CAK ROA . . . R 5 16.828 -26.858 -12.572 1 41.55 ? CAK ROA 517 A 1 HETATM 16 O OAL ROA . . . R 5 15.713 -27.188 -12.808 1 42.07 ? OAL ROA 517 A 1 HETATM 17 C CAJ ROA . . . R 5 17.922 -26.994 -13.63 1 41.88 ? CAJ ROA 517 A 1 HETATM 18 C CAI ROA . . . R 5 17.652 -27.365 -14.866 1 46.33 ? CAI ROA 517 A 1 HETATM 19 C CAC ROA . . . R 5 18.81 -27.469 -15.857 1 45.68 ? CAC ROA 517 A 1 HETATM 20 C CAD ROA . . . R 5 19.983 -26.774 -15.604 1 45.16 ? CAD ROA 517 A 1 HETATM 21 C CAE ROA . . . R 5 21.044 -26.854 -16.49 1 46.73 ? CAE ROA 517 A 1 HETATM 22 O OAG ROA . . . R 5 22.226 -26.148 -16.228 1 50.2 ? OAG ROA 517 A 1 HETATM 23 C CAF ROA . . . R 5 20.93 -27.634 -17.632 1 49.94 ? CAF ROA 517 A 1 HETATM 24 O OAH ROA . . . R 5 22.004 -27.717 -18.531 1 51.04 ? OAH ROA 517 A 1 HETATM 25 C CAB ROA . . . R 5 19.756 -28.329 -17.887 1 48.78 ? CAB ROA 517 A 1 HETATM 26 C CAA ROA . . . R 5 18.694 -28.249 -16.998 1 47.65 ? CAA ROA 517 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #