data_7BM7 # _model_server_result.job_id n0Orf-7a8UUpZN9xKz5Bfg _model_server_result.datetime_utc '2024-11-29 08:08:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 7BM7 # _exptl.entry_id 7BM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.286 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-Naphthalenepentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BM7 _cell.length_a 59.595 _cell.length_b 71.543 _cell.length_c 78.562 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C15 H16 O2' _chem_comp.formula_weight 228.286 _chem_comp.id U3Q _chem_comp.mon_nstd_flag . _chem_comp.name '1-Naphthalenepentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-naphthalen-1-ylpentanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 U3Q doub 401 n y C01 C17 U3Q sing 402 n y C02 C03 U3Q sing 403 n y C10 C11 U3Q sing 404 n n C10 C09 U3Q sing 405 n n C17 C16 U3Q doub 406 n y C11 C12 U3Q sing 407 n n O15 C13 U3Q doub 408 n n C03 C04 U3Q doub 409 n y O14 C13 U3Q sing 410 n n C13 C12 U3Q sing 411 n n C16 C04 U3Q sing 412 n y C16 C08 U3Q sing 413 n y C04 C05 U3Q sing 414 n y C09 C08 U3Q sing 415 n n C08 C07 U3Q doub 416 n y C05 C06 U3Q doub 417 n y C07 C06 U3Q sing 418 n y C01 H1 U3Q sing 419 n n C02 H2 U3Q sing 420 n n C03 H3 U3Q sing 421 n n C05 H4 U3Q sing 422 n n C06 H5 U3Q sing 423 n n C07 H6 U3Q sing 424 n n C09 H7 U3Q sing 425 n n C09 H8 U3Q sing 426 n n C10 H9 U3Q sing 427 n n C10 H10 U3Q sing 428 n n C11 H11 U3Q sing 429 n n C11 H12 U3Q sing 430 n n C12 H13 U3Q sing 431 n n C12 H14 U3Q sing 432 n n C17 H15 U3Q sing 433 n n O14 H16 U3Q sing 434 n n # _atom_sites.entry_id 7BM7 _atom_sites.fract_transf_matrix[1][1] 0.01678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 4 DMS A 1 504 1601 DMS DMS . F 5 U3Q A 1 505 1801 U3Q XXX . G 2 SO4 A 1 506 8 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 2 SO4 A 1 508 14 SO4 SO4 . J 6 HOH A 1 601 27 HOH HOH . J 6 HOH A 2 602 11 HOH HOH . J 6 HOH A 3 603 1070 HOH HOH . J 6 HOH A 4 604 1051 HOH HOH . J 6 HOH A 5 605 1027 HOH HOH . J 6 HOH A 6 606 22 HOH HOH . J 6 HOH A 7 607 1043 HOH HOH . J 6 HOH A 8 608 1001 HOH HOH . J 6 HOH A 9 609 1197 HOH HOH . J 6 HOH A 10 610 1008 HOH HOH . J 6 HOH A 11 611 1007 HOH HOH . J 6 HOH A 12 612 1068 HOH HOH . J 6 HOH A 13 613 57 HOH HOH . J 6 HOH A 14 614 1062 HOH HOH . J 6 HOH A 15 615 1019 HOH HOH . J 6 HOH A 16 616 23 HOH HOH . J 6 HOH A 17 617 1047 HOH HOH . J 6 HOH A 18 618 1040 HOH HOH . J 6 HOH A 19 619 1003 HOH HOH . J 6 HOH A 20 620 1082 HOH HOH . J 6 HOH A 21 621 1048 HOH HOH . J 6 HOH A 22 622 1004 HOH HOH . J 6 HOH A 23 623 1006 HOH HOH . J 6 HOH A 24 624 1005 HOH HOH . J 6 HOH A 25 625 1036 HOH HOH . J 6 HOH A 26 626 1091 HOH HOH . J 6 HOH A 27 627 1035 HOH HOH . J 6 HOH A 28 628 1012 HOH HOH . J 6 HOH A 29 629 1029 HOH HOH . J 6 HOH A 30 630 1033 HOH HOH . J 6 HOH A 31 631 1149 HOH HOH . J 6 HOH A 32 632 1058 HOH HOH . J 6 HOH A 33 633 1196 HOH HOH . J 6 HOH A 34 634 1018 HOH HOH . J 6 HOH A 35 635 1016 HOH HOH . J 6 HOH A 36 636 1002 HOH HOH . J 6 HOH A 37 637 1013 HOH HOH . J 6 HOH A 38 638 1038 HOH HOH . J 6 HOH A 39 639 1037 HOH HOH . J 6 HOH A 40 640 1073 HOH HOH . J 6 HOH A 41 641 1011 HOH HOH . J 6 HOH A 42 642 1109 HOH HOH . J 6 HOH A 43 643 1190 HOH HOH . J 6 HOH A 44 644 1030 HOH HOH . J 6 HOH A 45 645 1014 HOH HOH . J 6 HOH A 46 646 1064 HOH HOH . J 6 HOH A 47 647 1041 HOH HOH . J 6 HOH A 48 648 1023 HOH HOH . J 6 HOH A 49 649 1067 HOH HOH . J 6 HOH A 50 650 1052 HOH HOH . J 6 HOH A 51 651 1114 HOH HOH . J 6 HOH A 52 652 1026 HOH HOH . J 6 HOH A 53 653 1015 HOH HOH . J 6 HOH A 54 654 1092 HOH HOH . J 6 HOH A 55 655 1017 HOH HOH . J 6 HOH A 56 656 1078 HOH HOH . J 6 HOH A 57 657 30 HOH HOH . J 6 HOH A 58 658 1039 HOH HOH . J 6 HOH A 59 659 1010 HOH HOH . J 6 HOH A 60 660 1071 HOH HOH . J 6 HOH A 61 661 1042 HOH HOH . J 6 HOH A 62 662 29 HOH HOH . J 6 HOH A 63 663 1142 HOH HOH . J 6 HOH A 64 664 1049 HOH HOH . J 6 HOH A 65 665 1074 HOH HOH . J 6 HOH A 66 666 1079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 U3Q . . . F 5 -0.228 -4.89 4.464 1 27.72 ? C01 U3Q 505 A 1 HETATM 2 C C02 U3Q . . . F 5 -0.895 -6.098 4.613 1 28.42 ? C02 U3Q 505 A 1 HETATM 3 C C03 U3Q . . . F 5 -0.293 -7.125 5.327 1 26.59 ? C03 U3Q 505 A 1 HETATM 4 C C04 U3Q . . . F 5 0.988 -6.938 5.873 1 27.6 ? C04 U3Q 505 A 1 HETATM 5 C C05 U3Q . . . F 5 1.588 -7.997 6.569 1 31.16 ? C05 U3Q 505 A 1 HETATM 6 C C06 U3Q . . . F 5 2.855 -7.832 7.117 1 27.63 ? C06 U3Q 505 A 1 HETATM 7 C C07 U3Q . . . F 5 3.522 -6.614 6.974 1 27.74 ? C07 U3Q 505 A 1 HETATM 8 C C08 U3Q . . . F 5 2.953 -5.558 6.286 1 27.8 ? C08 U3Q 505 A 1 HETATM 9 C C09 U3Q . . . F 5 3.779 -4.269 6.184 1 30.66 ? C09 U3Q 505 A 1 HETATM 10 C C10 U3Q . . . F 5 4.766 -4.217 5.001 1 26.16 ? C10 U3Q 505 A 1 HETATM 11 C C11 U3Q . . . F 5 6.08 -5.004 5.086 1 9.91 ? C11 U3Q 505 A 1 HETATM 12 C C12 U3Q . . . F 5 7.083 -4.358 6.052 1 24.66 ? C12 U3Q 505 A 1 HETATM 13 C C13 U3Q . . . F 5 7.923 -3.205 5.513 1 24.77 ? C13 U3Q 505 A 1 HETATM 14 C C16 U3Q . . . F 5 1.656 -5.726 5.723 1 31.7 ? C16 U3Q 505 A 1 HETATM 15 C C17 U3Q . . . F 5 1.034 -4.692 5.007 1 28.38 ? C17 U3Q 505 A 1 HETATM 16 O O14 U3Q . . . F 5 9.186 -3.295 5.437 1 27.88 ? O14 U3Q 505 A 1 HETATM 17 O O15 U3Q . . . F 5 7.344 -2.148 5.147 1 22.95 -1 O15 U3Q 505 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #