data_7BMB
#
_model_server_result.job_id            G0M7UvZADcjc4qeXtzUwdA 
_model_server_result.datetime_utc      '2024-10-19 15:48:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bmb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    7BMB 
#
_exptl.entry_id    7BMB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BMB 
_cell.length_a            59.46 
_cell.length_b            72.25 
_cell.length_c            78.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     7BMB 
_atom_sites.fract_transf_matrix[1][1]    0.016818 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013841 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 501 602 SO4 SO4 . 
C 3 NAG A 1 502 1452 NAG NAG . 
D 4 DMS A 1 503 1501 DMS DMS . 
E 4 DMS A 1 504 1601 DMS DMS . 
F 5 GOL A 1 505 1701 GOL GOL . 
G 6 U3T A 1 506 1801 U3T XXX . 
H 2 SO4 A 1 507 8 SO4 SO4 . 
I 2 SO4 A 1 508 10 SO4 SO4 . 
J 2 SO4 A 1 509 13 SO4 SO4 . 
K 2 SO4 A 1 510 14 SO4 SO4 . 
L 7 HOH A 1 601 1043 HOH HOH . 
L 7 HOH A 2 602 1036 HOH HOH . 
L 7 HOH A 3 603 1035 HOH HOH . 
L 7 HOH A 4 604 1047 HOH HOH . 
L 7 HOH A 5 605 28 HOH HOH . 
L 7 HOH A 6 606 1031 HOH HOH . 
L 7 HOH A 7 607 56 HOH HOH . 
L 7 HOH A 8 608 25 HOH HOH . 
L 7 HOH A 9 609 1059 HOH HOH . 
L 7 HOH A 10 610 27 HOH HOH . 
L 7 HOH A 11 611 1018 HOH HOH . 
L 7 HOH A 12 612 1091 HOH HOH . 
L 7 HOH A 13 613 1046 HOH HOH . 
L 7 HOH A 14 614 1196 HOH HOH . 
L 7 HOH A 15 615 1051 HOH HOH . 
L 7 HOH A 16 616 1004 HOH HOH . 
L 7 HOH A 17 617 1008 HOH HOH . 
L 7 HOH A 18 618 1027 HOH HOH . 
L 7 HOH A 19 619 12 HOH HOH . 
L 7 HOH A 20 620 1003 HOH HOH . 
L 7 HOH A 21 621 57 HOH HOH . 
L 7 HOH A 22 622 1029 HOH HOH . 
L 7 HOH A 23 623 22 HOH HOH . 
L 7 HOH A 24 624 1040 HOH HOH . 
L 7 HOH A 25 625 1098 HOH HOH . 
L 7 HOH A 26 626 1068 HOH HOH . 
L 7 HOH A 27 627 1190 HOH HOH . 
L 7 HOH A 28 628 1197 HOH HOH . 
L 7 HOH A 29 629 1070 HOH HOH . 
L 7 HOH A 30 630 1045 HOH HOH . 
L 7 HOH A 31 631 1048 HOH HOH . 
L 7 HOH A 32 632 1007 HOH HOH . 
L 7 HOH A 33 633 1019 HOH HOH . 
L 7 HOH A 34 634 1001 HOH HOH . 
L 7 HOH A 35 635 1062 HOH HOH . 
L 7 HOH A 36 636 1023 HOH HOH . 
L 7 HOH A 37 637 1058 HOH HOH . 
L 7 HOH A 38 638 1078 HOH HOH . 
L 7 HOH A 39 639 1012 HOH HOH . 
L 7 HOH A 40 640 1082 HOH HOH . 
L 7 HOH A 41 641 1052 HOH HOH . 
L 7 HOH A 42 642 1038 HOH HOH . 
L 7 HOH A 43 643 36 HOH HOH . 
L 7 HOH A 44 644 1033 HOH HOH . 
L 7 HOH A 45 645 1145 HOH HOH . 
L 7 HOH A 46 646 1016 HOH HOH . 
L 7 HOH A 47 647 1118 HOH HOH . 
L 7 HOH A 48 648 1064 HOH HOH . 
L 7 HOH A 49 649 1114 HOH HOH . 
L 7 HOH A 50 650 11 HOH HOH . 
L 7 HOH A 51 651 1002 HOH HOH . 
L 7 HOH A 52 652 1073 HOH HOH . 
L 7 HOH A 53 653 1030 HOH HOH . 
L 7 HOH A 54 654 1063 HOH HOH . 
L 7 HOH A 55 655 1010 HOH HOH . 
L 7 HOH A 56 656 1005 HOH HOH . 
L 7 HOH A 57 657 1077 HOH HOH . 
L 7 HOH A 58 658 1037 HOH HOH . 
L 7 HOH A 59 659 1109 HOH HOH . 
L 7 HOH A 60 660 1065 HOH HOH . 
L 7 HOH A 61 661 1013 HOH HOH . 
L 7 HOH A 62 662 1014 HOH HOH . 
L 7 HOH A 63 663 23 HOH HOH . 
L 7 HOH A 64 664 1017 HOH HOH . 
L 7 HOH A 65 665 1067 HOH HOH . 
L 7 HOH A 66 666 1074 HOH HOH . 
L 7 HOH A 67 667 1015 HOH HOH . 
L 7 HOH A 68 668 1071 HOH HOH . 
L 7 HOH A 69 669 1006 HOH HOH . 
L 7 HOH A 70 670 1152 HOH HOH . 
L 7 HOH A 71 671 1149 HOH HOH . 
L 7 HOH A 72 672 1057 HOH HOH . 
L 7 HOH A 73 673 1039 HOH HOH . 
L 7 HOH A 74 674 4 HOH HOH . 
L 7 HOH A 75 675 1142 HOH HOH . 
L 7 HOH A 76 676 30 HOH HOH . 
L 7 HOH A 77 677 1115 HOH HOH . 
L 7 HOH A 78 678 1026 HOH HOH . 
L 7 HOH A 79 679 1011 HOH HOH . 
L 7 HOH A 80 680 29 HOH HOH . 
L 7 HOH A 81 681 1041 HOH HOH . 
L 7 HOH A 82 682 1092 HOH HOH . 
L 7 HOH A 83 683 1093 HOH HOH . 
L 7 HOH A 84 684 1079 HOH HOH . 
L 7 HOH A 85 685 1042 HOH HOH . 
L 7 HOH A 86 686 1049 HOH HOH . 
L 7 HOH A 87 687 1155 HOH HOH . 
L 7 HOH A 88 688 1112 HOH HOH . 
L 7 HOH A 89 689 1153 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 -2.68 -6.802 -14.847 1 46.82 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . F 5 -1.696 -7.357 -14.063 1 48.44 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . F 5 -3.939 -6.776 -13.977 1 40.76 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . F 5 -3.875 -5.811 -13.011 1 39.41 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . F 5 -5.126 -6.578 -14.969 1 56.67 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . F 5 -5.085 -5.258 -15.411 1 53.23 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#