data_7BMB # _model_server_result.job_id g8P85JEeqOXbNRGfOyaRXg _model_server_result.datetime_utc '2024-11-29 09:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 7BMB # _exptl.entry_id 7BMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 246.302 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-(2-prop-2-ynoxyphenyl)hexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BMB _cell.length_a 59.46 _cell.length_b 72.25 _cell.length_c 78.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C15 H18 O3' _chem_comp.formula_weight 246.302 _chem_comp.id U3T _chem_comp.mon_nstd_flag . _chem_comp.name '6-(2-prop-2-ynoxyphenyl)hexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Benzenehexanoic acid, 2-(2-propyn-1-yloxy)-;6-{2-[(Prop-2-yn-1-yl)oxy]phenyl}hexanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 U3T doub 414 n y C08 C09 U3T sing 415 n y C07 C06 U3T sing 416 n y C09 C10 U3T doub 417 n y O17 C16 U3T doub 418 n n C14 C15 U3T sing 419 n n C14 C13 U3T sing 420 n n C12 C13 U3T sing 421 n n C12 C11 U3T sing 422 n n C16 O18 U3T sing 423 n n C16 C15 U3T sing 424 n n C06 C05 U3T doub 425 n y C10 C05 U3T sing 426 n y C10 C11 U3T sing 427 n n C05 O04 U3T sing 428 n n C01 C02 U3T trip 429 n n C02 C03 U3T sing 430 n n C03 O04 U3T sing 431 n n C01 H1 U3T sing 432 n n C03 H2 U3T sing 433 n n C03 H3 U3T sing 434 n n C06 H4 U3T sing 435 n n C07 H5 U3T sing 436 n n C08 H6 U3T sing 437 n n C09 H7 U3T sing 438 n n C11 H8 U3T sing 439 n n C11 H9 U3T sing 440 n n C12 H10 U3T sing 441 n n C12 H11 U3T sing 442 n n C13 H12 U3T sing 443 n n C13 H13 U3T sing 444 n n C14 H14 U3T sing 445 n n C14 H15 U3T sing 446 n n C15 H16 U3T sing 447 n n C15 H17 U3T sing 448 n n O18 H18 U3T sing 449 n n # _atom_sites.entry_id 7BMB _atom_sites.fract_transf_matrix[1][1] 0.016818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 DMS A 1 503 1501 DMS DMS . E 4 DMS A 1 504 1601 DMS DMS . F 5 GOL A 1 505 1701 GOL GOL . G 6 U3T A 1 506 1801 U3T XXX . H 2 SO4 A 1 507 8 SO4 SO4 . I 2 SO4 A 1 508 10 SO4 SO4 . J 2 SO4 A 1 509 13 SO4 SO4 . K 2 SO4 A 1 510 14 SO4 SO4 . L 7 HOH A 1 601 1043 HOH HOH . L 7 HOH A 2 602 1036 HOH HOH . L 7 HOH A 3 603 1035 HOH HOH . L 7 HOH A 4 604 1047 HOH HOH . L 7 HOH A 5 605 28 HOH HOH . L 7 HOH A 6 606 1031 HOH HOH . L 7 HOH A 7 607 56 HOH HOH . L 7 HOH A 8 608 25 HOH HOH . L 7 HOH A 9 609 1059 HOH HOH . L 7 HOH A 10 610 27 HOH HOH . L 7 HOH A 11 611 1018 HOH HOH . L 7 HOH A 12 612 1091 HOH HOH . L 7 HOH A 13 613 1046 HOH HOH . L 7 HOH A 14 614 1196 HOH HOH . L 7 HOH A 15 615 1051 HOH HOH . L 7 HOH A 16 616 1004 HOH HOH . L 7 HOH A 17 617 1008 HOH HOH . L 7 HOH A 18 618 1027 HOH HOH . L 7 HOH A 19 619 12 HOH HOH . L 7 HOH A 20 620 1003 HOH HOH . L 7 HOH A 21 621 57 HOH HOH . L 7 HOH A 22 622 1029 HOH HOH . L 7 HOH A 23 623 22 HOH HOH . L 7 HOH A 24 624 1040 HOH HOH . L 7 HOH A 25 625 1098 HOH HOH . L 7 HOH A 26 626 1068 HOH HOH . L 7 HOH A 27 627 1190 HOH HOH . L 7 HOH A 28 628 1197 HOH HOH . L 7 HOH A 29 629 1070 HOH HOH . L 7 HOH A 30 630 1045 HOH HOH . L 7 HOH A 31 631 1048 HOH HOH . L 7 HOH A 32 632 1007 HOH HOH . L 7 HOH A 33 633 1019 HOH HOH . L 7 HOH A 34 634 1001 HOH HOH . L 7 HOH A 35 635 1062 HOH HOH . L 7 HOH A 36 636 1023 HOH HOH . L 7 HOH A 37 637 1058 HOH HOH . L 7 HOH A 38 638 1078 HOH HOH . L 7 HOH A 39 639 1012 HOH HOH . L 7 HOH A 40 640 1082 HOH HOH . L 7 HOH A 41 641 1052 HOH HOH . L 7 HOH A 42 642 1038 HOH HOH . L 7 HOH A 43 643 36 HOH HOH . L 7 HOH A 44 644 1033 HOH HOH . L 7 HOH A 45 645 1145 HOH HOH . L 7 HOH A 46 646 1016 HOH HOH . L 7 HOH A 47 647 1118 HOH HOH . L 7 HOH A 48 648 1064 HOH HOH . L 7 HOH A 49 649 1114 HOH HOH . L 7 HOH A 50 650 11 HOH HOH . L 7 HOH A 51 651 1002 HOH HOH . L 7 HOH A 52 652 1073 HOH HOH . L 7 HOH A 53 653 1030 HOH HOH . L 7 HOH A 54 654 1063 HOH HOH . L 7 HOH A 55 655 1010 HOH HOH . L 7 HOH A 56 656 1005 HOH HOH . L 7 HOH A 57 657 1077 HOH HOH . L 7 HOH A 58 658 1037 HOH HOH . L 7 HOH A 59 659 1109 HOH HOH . L 7 HOH A 60 660 1065 HOH HOH . L 7 HOH A 61 661 1013 HOH HOH . L 7 HOH A 62 662 1014 HOH HOH . L 7 HOH A 63 663 23 HOH HOH . L 7 HOH A 64 664 1017 HOH HOH . L 7 HOH A 65 665 1067 HOH HOH . L 7 HOH A 66 666 1074 HOH HOH . L 7 HOH A 67 667 1015 HOH HOH . L 7 HOH A 68 668 1071 HOH HOH . L 7 HOH A 69 669 1006 HOH HOH . L 7 HOH A 70 670 1152 HOH HOH . L 7 HOH A 71 671 1149 HOH HOH . L 7 HOH A 72 672 1057 HOH HOH . L 7 HOH A 73 673 1039 HOH HOH . L 7 HOH A 74 674 4 HOH HOH . L 7 HOH A 75 675 1142 HOH HOH . L 7 HOH A 76 676 30 HOH HOH . L 7 HOH A 77 677 1115 HOH HOH . L 7 HOH A 78 678 1026 HOH HOH . L 7 HOH A 79 679 1011 HOH HOH . L 7 HOH A 80 680 29 HOH HOH . L 7 HOH A 81 681 1041 HOH HOH . L 7 HOH A 82 682 1092 HOH HOH . L 7 HOH A 83 683 1093 HOH HOH . L 7 HOH A 84 684 1079 HOH HOH . L 7 HOH A 85 685 1042 HOH HOH . L 7 HOH A 86 686 1049 HOH HOH . L 7 HOH A 87 687 1155 HOH HOH . L 7 HOH A 88 688 1112 HOH HOH . L 7 HOH A 89 689 1153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 U3T . . . G 6 1.06 -10.489 6.671 1 40.72 ? C01 U3T 506 A 1 HETATM 2 C C02 U3T . . . G 6 1.581 -9.419 6.767 1 41.15 ? C02 U3T 506 A 1 HETATM 3 C C03 U3T . . . G 6 2.226 -8.033 6.876 1 45.7 ? C03 U3T 506 A 1 HETATM 4 C C05 U3T . . . G 6 0.604 -6.471 6.142 1 43.33 ? C05 U3T 506 A 1 HETATM 5 C C06 U3T . . . G 6 -0.465 -7.101 5.538 1 37.37 ? C06 U3T 506 A 1 HETATM 6 C C07 U3T . . . G 6 -1.089 -6.519 4.446 1 35.09 ? C07 U3T 506 A 1 HETATM 7 C C08 U3T . . . G 6 -0.629 -5.317 3.948 1 32.51 ? C08 U3T 506 A 1 HETATM 8 C C09 U3T . . . G 6 0.443 -4.678 4.55 1 40.16 ? C09 U3T 506 A 1 HETATM 9 C C10 U3T . . . G 6 1.066 -5.254 5.639 1 38.54 ? C10 U3T 506 A 1 HETATM 10 C C11 U3T . . . G 6 2.251 -4.53 6.274 1 43.48 ? C11 U3T 506 A 1 HETATM 11 C C12 U3T . . . G 6 3.421 -4.338 5.319 1 42.82 ? C12 U3T 506 A 1 HETATM 12 C C13 U3T . . . G 6 4.73 -4.098 6.072 1 35.39 ? C13 U3T 506 A 1 HETATM 13 C C14 U3T . . . G 6 5.934 -4.575 5.259 1 39.32 ? C14 U3T 506 A 1 HETATM 14 C C15 U3T . . . G 6 7.285 -4.317 5.934 1 37.2 ? C15 U3T 506 A 1 HETATM 15 C C16 U3T . . . G 6 7.938 -2.985 5.535 1 37.44 ? C16 U3T 506 A 1 HETATM 16 O O04 U3T . . . G 6 1.234 -7.1 7.232 1 51.51 ? O04 U3T 506 A 1 HETATM 17 O O17 U3T . . . G 6 7.218 -2.035 5.123 1 64.22 -1 O17 U3T 506 A 1 HETATM 18 O O18 U3T . . . G 6 9.205 -2.853 5.62 1 33.05 ? O18 U3T 506 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #