data_7BMF # _model_server_result.job_id 1XLOtMS1wxgE-JaDyptcuw _model_server_result.datetime_utc '2024-11-24 23:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":505}' # _entry.id 7BMF # _exptl.entry_id 7BMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 79.86 _cell.angle_beta 82.77 _cell.angle_gamma 63.98 _cell.entry_id 7BMF _cell.length_a 53.75 _cell.length_b 53.88 _cell.length_c 86.72 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,T 1 1 B,M,N,O,P,Q,R,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 P N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 43 A HIS 43 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A OD1 ASP 45 A ASP 45 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc3 A OD2 ASP 45 A ASP 45 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A OD2 ASP 47 A ASP 47 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 A OD2 ASP 94 A ASP 94 1_555 C MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc6 A OD1 ASP 94 A ASP 94 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 A NE2 HIS 115 A HIS 115 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 A OD2 ASP 171 A ASP 171 1_555 D MN MN . A MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc9 C MN MN . A MN 501 1_555 E O2A CTP . A CTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc10 D MN MN . A MN 502 1_555 E O1A CTP . A CTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc11 B ND1 HIS 43 B HIS 43 1_555 N MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc12 B OD1 ASP 45 B ASP 45 1_555 N MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc13 B OD2 ASP 45 B ASP 45 1_555 N MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc14 B OD2 ASP 47 B ASP 47 1_555 M MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc15 B OD1 ASP 94 B ASP 94 1_555 M MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc16 B OD2 ASP 94 B ASP 94 1_555 N MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc17 B NE2 HIS 115 B HIS 115 1_555 M MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc18 B OD2 ASP 171 B ASP 171 1_555 M MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc19 M MN MN . B MN 501 1_555 O O2A CTP . B CTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc20 N MN MN . B MN 502 1_555 O O1A CTP . B CTP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 283 n n N O2 NO3 sing 284 n n N O3 NO3 sing 285 n n # _atom_sites.entry_id 7BMF _atom_sites.fract_transf_matrix[1][1] 0.018605 _atom_sites.fract_transf_matrix[1][2] -0.009083 _atom_sites.fract_transf_matrix[1][3] -0.00114 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020653 _atom_sites.fract_transf_matrix[2][3] -0.002827 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 501 3 MN MN . D 2 MN A 1 502 4 MN MN . E 3 CTP A 1 503 1 CTP CTP . F 4 NO3 A 1 504 5 NO3 NO3 . G 4 NO3 A 1 505 6 NO3 NO3 . H 4 NO3 A 1 506 7 NO3 NO3 . I 4 NO3 A 1 507 9 NO3 NO3 . J 5 PEG A 1 508 1 PEG PEG . K 5 PEG A 1 509 3 PEG PEG . L 5 PEG A 1 510 5 PEG PEG . M 2 MN B 1 501 1 MN MN . N 2 MN B 1 502 2 MN MN . O 3 CTP B 1 503 2 CTP CTP . P 4 NO3 B 1 504 8 NO3 NO3 . Q 4 NO3 B 1 505 10 NO3 NO3 . R 5 PEG B 1 506 2 PEG PEG . S 5 PEG B 1 507 4 PEG PEG . T 6 HOH A 1 601 92 HOH HOH . T 6 HOH A 2 602 76 HOH HOH . T 6 HOH A 3 603 179 HOH HOH . T 6 HOH A 4 604 32 HOH HOH . T 6 HOH A 5 605 24 HOH HOH . T 6 HOH A 6 606 183 HOH HOH . T 6 HOH A 7 607 21 HOH HOH . T 6 HOH A 8 608 99 HOH HOH . T 6 HOH A 9 609 33 HOH HOH . T 6 HOH A 10 610 169 HOH HOH . T 6 HOH A 11 611 9 HOH HOH . T 6 HOH A 12 612 1 HOH HOH . T 6 HOH A 13 613 19 HOH HOH . T 6 HOH A 14 614 100 HOH HOH . T 6 HOH A 15 615 211 HOH HOH . T 6 HOH A 16 616 93 HOH HOH . T 6 HOH A 17 617 172 HOH HOH . T 6 HOH A 18 618 182 HOH HOH . T 6 HOH A 19 619 95 HOH HOH . T 6 HOH A 20 620 98 HOH HOH . T 6 HOH A 21 621 87 HOH HOH . T 6 HOH A 22 622 34 HOH HOH . T 6 HOH A 23 623 36 HOH HOH . T 6 HOH A 24 624 16 HOH HOH . T 6 HOH A 25 625 107 HOH HOH . T 6 HOH A 26 626 97 HOH HOH . T 6 HOH A 27 627 161 HOH HOH . T 6 HOH A 28 628 11 HOH HOH . T 6 HOH A 29 629 10 HOH HOH . T 6 HOH A 30 630 22 HOH HOH . T 6 HOH A 31 631 215 HOH HOH . T 6 HOH A 32 632 106 HOH HOH . T 6 HOH A 33 633 20 HOH HOH . T 6 HOH A 34 634 12 HOH HOH . T 6 HOH A 35 635 108 HOH HOH . T 6 HOH A 36 636 30 HOH HOH . T 6 HOH A 37 637 200 HOH HOH . T 6 HOH A 38 638 96 HOH HOH . T 6 HOH A 39 639 113 HOH HOH . T 6 HOH A 40 640 7 HOH HOH . T 6 HOH A 41 641 35 HOH HOH . T 6 HOH A 42 642 86 HOH HOH . T 6 HOH A 43 643 109 HOH HOH . T 6 HOH A 44 644 4 HOH HOH . T 6 HOH A 45 645 14 HOH HOH . T 6 HOH A 46 646 210 HOH HOH . T 6 HOH A 47 647 89 HOH HOH . T 6 HOH A 48 648 90 HOH HOH . T 6 HOH A 49 649 176 HOH HOH . T 6 HOH A 50 650 68 HOH HOH . T 6 HOH A 51 651 69 HOH HOH . T 6 HOH A 52 652 206 HOH HOH . T 6 HOH A 53 653 88 HOH HOH . T 6 HOH A 54 654 178 HOH HOH . T 6 HOH A 55 655 71 HOH HOH . T 6 HOH A 56 656 5 HOH HOH . T 6 HOH A 57 657 167 HOH HOH . T 6 HOH A 58 658 111 HOH HOH . T 6 HOH A 59 659 165 HOH HOH . T 6 HOH A 60 660 208 HOH HOH . T 6 HOH A 61 661 26 HOH HOH . T 6 HOH A 62 662 38 HOH HOH . T 6 HOH A 63 663 115 HOH HOH . T 6 HOH A 64 664 31 HOH HOH . T 6 HOH A 65 665 23 HOH HOH . T 6 HOH A 66 666 77 HOH HOH . T 6 HOH A 67 667 27 HOH HOH . T 6 HOH A 68 668 28 HOH HOH . T 6 HOH A 69 669 29 HOH HOH . T 6 HOH A 70 670 174 HOH HOH . T 6 HOH A 71 671 114 HOH HOH . T 6 HOH A 72 672 105 HOH HOH . T 6 HOH A 73 673 204 HOH HOH . T 6 HOH A 74 674 170 HOH HOH . T 6 HOH A 75 675 166 HOH HOH . T 6 HOH A 76 676 37 HOH HOH . T 6 HOH A 77 677 73 HOH HOH . T 6 HOH A 78 678 79 HOH HOH . T 6 HOH A 79 679 85 HOH HOH . T 6 HOH A 80 680 17 HOH HOH . T 6 HOH A 81 681 180 HOH HOH . T 6 HOH A 82 682 15 HOH HOH . T 6 HOH A 83 683 18 HOH HOH . T 6 HOH A 84 684 75 HOH HOH . T 6 HOH A 85 685 171 HOH HOH . T 6 HOH A 86 686 81 HOH HOH . T 6 HOH A 87 687 8 HOH HOH . T 6 HOH A 88 688 80 HOH HOH . T 6 HOH A 89 689 83 HOH HOH . T 6 HOH A 90 690 103 HOH HOH . T 6 HOH A 91 691 181 HOH HOH . T 6 HOH A 92 692 84 HOH HOH . T 6 HOH A 93 693 214 HOH HOH . T 6 HOH A 94 694 3 HOH HOH . T 6 HOH A 95 695 74 HOH HOH . T 6 HOH A 96 696 207 HOH HOH . T 6 HOH A 97 697 25 HOH HOH . T 6 HOH A 98 698 94 HOH HOH . T 6 HOH A 99 699 13 HOH HOH . T 6 HOH A 100 700 118 HOH HOH . T 6 HOH A 101 701 72 HOH HOH . T 6 HOH A 102 702 78 HOH HOH . T 6 HOH A 103 703 173 HOH HOH . T 6 HOH A 104 704 213 HOH HOH . T 6 HOH A 105 705 82 HOH HOH . T 6 HOH A 106 706 209 HOH HOH . T 6 HOH A 107 707 112 HOH HOH . T 6 HOH A 108 708 175 HOH HOH . T 6 HOH A 109 709 177 HOH HOH . T 6 HOH A 110 710 91 HOH HOH . T 6 HOH A 111 711 201 HOH HOH . T 6 HOH A 112 712 168 HOH HOH . U 6 HOH B 1 601 117 HOH HOH . U 6 HOH B 2 602 160 HOH HOH . U 6 HOH B 3 603 217 HOH HOH . U 6 HOH B 4 604 62 HOH HOH . U 6 HOH B 5 605 59 HOH HOH . U 6 HOH B 6 606 48 HOH HOH . U 6 HOH B 7 607 131 HOH HOH . U 6 HOH B 8 608 56 HOH HOH . U 6 HOH B 9 609 65 HOH HOH . U 6 HOH B 10 610 190 HOH HOH . U 6 HOH B 11 611 55 HOH HOH . U 6 HOH B 12 612 156 HOH HOH . U 6 HOH B 13 613 61 HOH HOH . U 6 HOH B 14 614 195 HOH HOH . U 6 HOH B 15 615 119 HOH HOH . U 6 HOH B 16 616 52 HOH HOH . U 6 HOH B 17 617 133 HOH HOH . U 6 HOH B 18 618 53 HOH HOH . U 6 HOH B 19 619 218 HOH HOH . U 6 HOH B 20 620 192 HOH HOH . U 6 HOH B 21 621 153 HOH HOH . U 6 HOH B 22 622 54 HOH HOH . U 6 HOH B 23 623 102 HOH HOH . U 6 HOH B 24 624 40 HOH HOH . U 6 HOH B 25 625 141 HOH HOH . U 6 HOH B 26 626 43 HOH HOH . U 6 HOH B 27 627 39 HOH HOH . U 6 HOH B 28 628 116 HOH HOH . U 6 HOH B 29 629 121 HOH HOH . U 6 HOH B 30 630 57 HOH HOH . U 6 HOH B 31 631 58 HOH HOH . U 6 HOH B 32 632 185 HOH HOH . U 6 HOH B 33 633 191 HOH HOH . U 6 HOH B 34 634 136 HOH HOH . U 6 HOH B 35 635 188 HOH HOH . U 6 HOH B 36 636 120 HOH HOH . U 6 HOH B 37 637 128 HOH HOH . U 6 HOH B 38 638 104 HOH HOH . U 6 HOH B 39 639 49 HOH HOH . U 6 HOH B 40 640 163 HOH HOH . U 6 HOH B 41 641 123 HOH HOH . U 6 HOH B 42 642 205 HOH HOH . U 6 HOH B 43 643 216 HOH HOH . U 6 HOH B 44 644 198 HOH HOH . U 6 HOH B 45 645 150 HOH HOH . U 6 HOH B 46 646 189 HOH HOH . U 6 HOH B 47 647 187 HOH HOH . U 6 HOH B 48 648 41 HOH HOH . U 6 HOH B 49 649 124 HOH HOH . U 6 HOH B 50 650 130 HOH HOH . U 6 HOH B 51 651 145 HOH HOH . U 6 HOH B 52 652 199 HOH HOH . U 6 HOH B 53 653 46 HOH HOH . U 6 HOH B 54 654 140 HOH HOH . U 6 HOH B 55 655 143 HOH HOH . U 6 HOH B 56 656 142 HOH HOH . U 6 HOH B 57 657 147 HOH HOH . U 6 HOH B 58 658 66 HOH HOH . U 6 HOH B 59 659 129 HOH HOH . U 6 HOH B 60 660 194 HOH HOH . U 6 HOH B 61 661 159 HOH HOH . U 6 HOH B 62 662 144 HOH HOH . U 6 HOH B 63 663 146 HOH HOH . U 6 HOH B 64 664 134 HOH HOH . U 6 HOH B 65 665 125 HOH HOH . U 6 HOH B 66 666 45 HOH HOH . U 6 HOH B 67 667 152 HOH HOH . U 6 HOH B 68 668 202 HOH HOH . U 6 HOH B 69 669 44 HOH HOH . U 6 HOH B 70 670 50 HOH HOH . U 6 HOH B 71 671 186 HOH HOH . U 6 HOH B 72 672 164 HOH HOH . U 6 HOH B 73 673 63 HOH HOH . U 6 HOH B 74 674 219 HOH HOH . U 6 HOH B 75 675 149 HOH HOH . U 6 HOH B 76 676 155 HOH HOH . U 6 HOH B 77 677 135 HOH HOH . U 6 HOH B 78 678 151 HOH HOH . U 6 HOH B 79 679 212 HOH HOH . U 6 HOH B 80 680 101 HOH HOH . U 6 HOH B 81 681 158 HOH HOH . U 6 HOH B 82 682 157 HOH HOH . U 6 HOH B 83 683 197 HOH HOH . U 6 HOH B 84 684 126 HOH HOH . U 6 HOH B 85 685 203 HOH HOH . U 6 HOH B 86 686 122 HOH HOH . U 6 HOH B 87 687 184 HOH HOH . U 6 HOH B 88 688 162 HOH HOH . U 6 HOH B 89 689 127 HOH HOH . U 6 HOH B 90 690 138 HOH HOH . U 6 HOH B 91 691 139 HOH HOH . U 6 HOH B 92 692 196 HOH HOH . U 6 HOH B 93 693 154 HOH HOH . U 6 HOH B 94 694 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . Q 4 17.796 7.622 60.355 1 54.98 ? N NO3 505 B 1 HETATM 2 O O1 NO3 . . . Q 4 18.541 7.267 61.294 1 46.98 ? O1 NO3 505 B 1 HETATM 3 O O2 NO3 . . . Q 4 16.616 6.87 59.928 1 42.56 ? O2 NO3 505 B 1 HETATM 4 O O3 NO3 . . . Q 4 18.16 8.828 59.71 1 46.36 ? O3 NO3 505 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #