data_7BMG # _model_server_result.job_id rgRwTOaDBZSEGKx23foTyA _model_server_result.datetime_utc '2024-10-26 02:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7BMG # _exptl.entry_id 7BMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 516.027 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{R})-3-(4-chlorophenyl)-2-[(4-ethynylphenyl)methyl]-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BMG _cell.length_a 71.53 _cell.length_b 71.53 _cell.length_c 100.43 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H30 Cl N O4' _chem_comp.formula_weight 516.027 _chem_comp.id U3Z _chem_comp.mon_nstd_flag . _chem_comp.name (3~{R})-3-(4-chlorophenyl)-2-[(4-ethynylphenyl)methyl]-3-[[1-(hydroxymethyl)cyclopropyl]methoxy]-6-(2-oxidanylpropan-2-yl)isoindol-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C34 U3Z sing 339 n n C34 C36 U3Z doub 340 n y C34 C33 U3Z sing 341 n y C36 C37 U3Z sing 342 n y C18 C16 U3Z sing 343 n n C33 C32 U3Z doub 344 n y C37 C31 U3Z doub 345 n y C05 C04 U3Z trip 346 n n C04 C03 U3Z sing 347 n n C20 C21 U3Z doub 348 n y C20 C15 U3Z sing 349 n y C32 C31 U3Z sing 350 n y C16 C15 U3Z sing 351 n n C16 O19 U3Z sing 352 n n C16 C17 U3Z sing 353 n n C31 C23 U3Z sing 354 n n C21 C22 U3Z sing 355 n y C06 C03 U3Z doub 356 n y C06 C07 U3Z sing 357 n y C15 C14 U3Z doub 358 n y C03 C02 U3Z sing 359 n y C22 C23 U3Z sing 360 n n C22 C13 U3Z doub 361 n y C07 C08 U3Z doub 362 n y C14 C13 U3Z sing 363 n y C02 C01 U3Z doub 364 n y C23 O24 U3Z sing 365 n n C23 N10 U3Z sing 366 n n C13 C11 U3Z sing 367 n n C08 C01 U3Z sing 368 n y C08 C09 U3Z sing 369 n n O24 C25 U3Z sing 370 n n N10 C11 U3Z sing 371 n n N10 C09 U3Z sing 372 n n C11 O12 U3Z doub 373 n n C27 C26 U3Z sing 374 n n C27 C28 U3Z sing 375 n n C25 C26 U3Z sing 376 n n C26 C29 U3Z sing 377 n n C26 C28 U3Z sing 378 n n C29 O30 U3Z sing 379 n n C14 H1 U3Z sing 380 n n C21 H2 U3Z sing 381 n n C25 H3 U3Z sing 382 n n C25 H4 U3Z sing 383 n n C27 H5 U3Z sing 384 n n C27 H6 U3Z sing 385 n n C28 H7 U3Z sing 386 n n C28 H8 U3Z sing 387 n n O30 H9 U3Z sing 388 n n C36 H10 U3Z sing 389 n n C37 H11 U3Z sing 390 n n C01 H12 U3Z sing 391 n n C02 H13 U3Z sing 392 n n C05 H14 U3Z sing 393 n n C06 H15 U3Z sing 394 n n C07 H16 U3Z sing 395 n n C09 H17 U3Z sing 396 n n C09 H18 U3Z sing 397 n n C17 H19 U3Z sing 398 n n C17 H20 U3Z sing 399 n n C17 H21 U3Z sing 400 n n C18 H22 U3Z sing 401 n n C18 H23 U3Z sing 402 n n C18 H24 U3Z sing 403 n n O19 H25 U3Z sing 404 n n C20 H26 U3Z sing 405 n n C29 H27 U3Z sing 406 n n C29 H28 U3Z sing 407 n n C32 H29 U3Z sing 408 n n C33 H30 U3Z sing 409 n n # _atom_sites.entry_id 7BMG _atom_sites.fract_transf_matrix[1][1] 0.01398 _atom_sites.fract_transf_matrix[1][2] 0.008071 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 3 U3Z A 1 204 1 U3Z L01 . F 4 HOH A 1 301 3 HOH HOH . F 4 HOH A 2 302 13 HOH HOH . F 4 HOH A 3 303 13 HOH HOH . F 4 HOH A 4 304 1 HOH HOH . F 4 HOH A 5 305 19 HOH HOH . F 4 HOH A 6 306 62 HOH HOH . F 4 HOH A 7 307 6 HOH HOH . F 4 HOH A 8 308 1 HOH HOH . F 4 HOH A 9 309 5 HOH HOH . F 4 HOH A 10 310 20 HOH HOH . F 4 HOH A 11 311 41 HOH HOH . F 4 HOH A 12 312 28 HOH HOH . F 4 HOH A 13 313 48 HOH HOH . F 4 HOH A 14 314 69 HOH HOH . F 4 HOH A 15 315 78 HOH HOH . F 4 HOH A 16 316 7 HOH HOH . F 4 HOH A 17 317 40 HOH HOH . F 4 HOH A 18 318 34 HOH HOH . F 4 HOH A 19 319 82 HOH HOH . F 4 HOH A 20 320 12 HOH HOH . F 4 HOH A 21 321 14 HOH HOH . F 4 HOH A 22 322 37 HOH HOH . F 4 HOH A 23 323 79 HOH HOH . F 4 HOH A 24 324 81 HOH HOH . F 4 HOH A 25 325 21 HOH HOH . F 4 HOH A 26 326 83 HOH HOH . F 4 HOH A 27 327 31 HOH HOH . F 4 HOH A 28 328 61 HOH HOH . F 4 HOH A 29 329 10 HOH HOH . F 4 HOH A 30 330 22 HOH HOH . F 4 HOH A 31 331 2 HOH HOH . F 4 HOH A 32 332 8 HOH HOH . F 4 HOH A 33 333 80 HOH HOH . F 4 HOH A 34 334 17 HOH HOH . F 4 HOH A 35 335 4 HOH HOH . F 4 HOH A 36 336 23 HOH HOH . F 4 HOH A 37 337 9 HOH HOH . F 4 HOH A 38 338 22 HOH HOH . F 4 HOH A 39 339 36 HOH HOH . F 4 HOH A 40 340 18 HOH HOH . F 4 HOH A 41 341 70 HOH HOH . F 4 HOH A 42 342 33 HOH HOH . F 4 HOH A 43 343 35 HOH HOH . F 4 HOH A 44 344 24 HOH HOH . F 4 HOH A 45 345 15 HOH HOH . F 4 HOH A 46 346 7 HOH HOH . F 4 HOH A 47 347 3 HOH HOH . F 4 HOH A 48 348 63 HOH HOH . F 4 HOH A 49 349 25 HOH HOH . F 4 HOH A 50 350 49 HOH HOH . F 4 HOH A 51 351 2 HOH HOH . F 4 HOH A 52 352 64 HOH HOH . F 4 HOH A 53 353 26 HOH HOH . F 4 HOH A 54 354 4 HOH HOH . F 4 HOH A 55 355 26 HOH HOH . F 4 HOH A 56 356 50 HOH HOH . F 4 HOH A 57 357 16 HOH HOH . F 4 HOH A 58 358 27 HOH HOH . F 4 HOH A 59 359 11 HOH HOH . F 4 HOH A 60 360 16 HOH HOH . F 4 HOH A 61 361 68 HOH HOH . F 4 HOH A 62 362 43 HOH HOH . F 4 HOH A 63 363 19 HOH HOH . F 4 HOH A 64 364 28 HOH HOH . F 4 HOH A 65 365 29 HOH HOH . F 4 HOH A 66 366 46 HOH HOH . F 4 HOH A 67 367 75 HOH HOH . F 4 HOH A 68 368 27 HOH HOH . F 4 HOH A 69 369 84 HOH HOH . F 4 HOH A 70 370 67 HOH HOH . F 4 HOH A 71 371 39 HOH HOH . F 4 HOH A 72 372 44 HOH HOH . F 4 HOH A 73 373 11 HOH HOH . F 4 HOH A 74 374 56 HOH HOH . F 4 HOH A 75 375 76 HOH HOH . F 4 HOH A 76 376 71 HOH HOH . F 4 HOH A 77 377 10 HOH HOH . F 4 HOH A 78 378 6 HOH HOH . F 4 HOH A 79 379 53 HOH HOH . F 4 HOH A 80 380 51 HOH HOH . F 4 HOH A 81 381 52 HOH HOH . F 4 HOH A 82 382 85 HOH HOH . F 4 HOH A 83 383 24 HOH HOH . F 4 HOH A 84 384 20 HOH HOH . F 4 HOH A 85 385 55 HOH HOH . F 4 HOH A 86 386 86 HOH HOH . F 4 HOH A 87 387 59 HOH HOH . F 4 HOH A 88 388 58 HOH HOH . F 4 HOH A 89 389 73 HOH HOH . F 4 HOH A 90 390 65 HOH HOH . F 4 HOH A 91 391 45 HOH HOH . F 4 HOH A 92 392 21 HOH HOH . F 4 HOH A 93 393 77 HOH HOH . F 4 HOH A 94 394 5 HOH HOH . F 4 HOH A 95 395 38 HOH HOH . F 4 HOH A 96 396 18 HOH HOH . F 4 HOH A 97 397 72 HOH HOH . F 4 HOH A 98 398 9 HOH HOH . F 4 HOH A 99 399 42 HOH HOH . F 4 HOH A 100 400 54 HOH HOH . F 4 HOH A 101 401 15 HOH HOH . F 4 HOH A 102 402 29 HOH HOH . F 4 HOH A 103 403 25 HOH HOH . F 4 HOH A 104 404 60 HOH HOH . F 4 HOH A 105 405 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 U3Z . . . E 3 -23.161 -8.136 14.432 1 30.64 ? C11 U3Z 204 A 1 HETATM 2 C C13 U3Z . . . E 3 -22.489 -7.119 13.612 1 26.61 ? C13 U3Z 204 A 1 HETATM 3 C C14 U3Z . . . E 3 -22.871 -5.837 13.337 1 24.41 ? C14 U3Z 204 A 1 HETATM 4 C C15 U3Z . . . E 3 -22.075 -5.007 12.528 1 25.1 ? C15 U3Z 204 A 1 HETATM 5 C C16 U3Z . . . E 3 -22.57 -3.599 12.176 1 28.94 ? C16 U3Z 204 A 1 HETATM 6 C C21 U3Z . . . E 3 -20.504 -6.856 12.308 1 24.19 ? C21 U3Z 204 A 1 HETATM 7 C C22 U3Z . . . E 3 -21.31 -7.642 13.114 1 27.73 ? C22 U3Z 204 A 1 HETATM 8 C C23 U3Z . . . E 3 -21.198 -9.103 13.548 1 25.21 ? C23 U3Z 204 A 1 HETATM 9 C C25 U3Z . . . E 3 -19.808 -8.87 15.499 1 30.02 ? C25 U3Z 204 A 1 HETATM 10 C C26 U3Z . . . E 3 -18.407 -9.204 15.949 1 29.96 ? C26 U3Z 204 A 1 HETATM 11 C C27 U3Z . . . E 3 -17.293 -8.36 15.415 1 33.73 ? C27 U3Z 204 A 1 HETATM 12 C C28 U3Z . . . E 3 -17.733 -8.192 16.843 1 34.47 ? C28 U3Z 204 A 1 HETATM 13 O O30 U3Z . . . E 3 -19.013 -11.292 17.067 1 35.15 ? O30 U3Z 204 A 1 HETATM 14 C C31 U3Z . . . E 3 -21.336 -9.954 12.259 1 25.27 ? C31 U3Z 204 A 1 HETATM 15 C C36 U3Z . . . E 3 -22.222 -10.24 10.02 1 23.43 ? C36 U3Z 204 A 1 HETATM 16 C C37 U3Z . . . E 3 -22.118 -9.497 11.196 1 29.04 ? C37 U3Z 204 A 1 HETATM 17 C C01 U3Z . . . E 3 -23.556 -12.801 14.282 1 28.08 ? C01 U3Z 204 A 1 HETATM 18 C C02 U3Z . . . E 3 -24.341 -13.667 13.538 1 28.84 ? C02 U3Z 204 A 1 HETATM 19 C C03 U3Z . . . E 3 -25.276 -13.154 12.639 1 27.84 ? C03 U3Z 204 A 1 HETATM 20 C C04 U3Z . . . E 3 -26.101 -14.043 11.862 1 31.57 ? C04 U3Z 204 A 1 HETATM 21 C C05 U3Z . . . E 3 -26.776 -14.774 11.227 1 28.11 ? C05 U3Z 204 A 1 HETATM 22 C C06 U3Z . . . E 3 -25.4 -11.774 12.501 1 25.15 ? C06 U3Z 204 A 1 HETATM 23 C C07 U3Z . . . E 3 -24.627 -10.916 13.268 1 24.81 ? C07 U3Z 204 A 1 HETATM 24 C C08 U3Z . . . E 3 -23.674 -11.421 14.141 1 27.99 ? C08 U3Z 204 A 1 HETATM 25 C C09 U3Z . . . E 3 -22.809 -10.508 14.968 1 23.2 ? C09 U3Z 204 A 1 HETATM 26 N N10 U3Z . . . E 3 -22.407 -9.257 14.339 1 27.95 ? N10 U3Z 204 A 1 HETATM 27 O O12 U3Z . . . E 3 -24.197 -8.032 15.088 1 30.88 ? O12 U3Z 204 A 1 HETATM 28 C C17 U3Z . . . E 3 -21.704 -2.452 12.715 1 27.29 ? C17 U3Z 204 A 1 HETATM 29 C C18 U3Z . . . E 3 -22.712 -3.464 10.655 1 30.35 ? C18 U3Z 204 A 1 HETATM 30 O O19 U3Z . . . E 3 -23.929 -3.494 12.641 1 30.65 ? O19 U3Z 204 A 1 HETATM 31 C C20 U3Z . . . E 3 -20.899 -5.538 11.999 1 24.57 ? C20 U3Z 204 A 1 HETATM 32 O O24 U3Z . . . E 3 -20.017 -9.462 14.211 1 29.18 ? O24 U3Z 204 A 1 HETATM 33 C C29 U3Z . . . E 3 -18.096 -10.662 16.178 1 31.61 ? C29 U3Z 204 A 1 HETATM 34 C C32 U3Z . . . E 3 -20.652 -11.159 12.119 1 30.22 ? C32 U3Z 204 A 1 HETATM 35 C C33 U3Z . . . E 3 -20.75 -11.898 10.939 1 28.37 ? C33 U3Z 204 A 1 HETATM 36 C C34 U3Z . . . E 3 -21.538 -11.424 9.911 1 26.33 ? C34 U3Z 204 A 1 HETATM 37 CL CL1 U3Z . . . E 3 -21.632 -12.326 8.42 1 27.33 ? CL1 U3Z 204 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #