data_7BMT # _model_server_result.job_id w-dxw2clkTXlo00D-tUfVw _model_server_result.datetime_utc '2024-11-16 18:32:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":216}' # _entry.id 7BMT # _exptl.entry_id 7BMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BMT _cell.length_a 78.877 _cell.length_b 78.877 _cell.length_c 36.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 127 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 30 A CYS 48 1_555 A SG CYS 115 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? disulf ? disulf3 A SG CYS 64 A CYS 82 1_555 A SG CYS 80 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf4 A SG CYS 76 A CYS 94 1_555 A SG CYS 94 A CYS 112 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.095 ? disulf ? disulf5 A SG CYS 76 A CYS 94 1_555 A SG CYS 94 A CYS 112 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.175 ? metalc ? metalc1 A O SER 60 A SER 78 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A O CYS 64 A CYS 82 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A OG SER 72 A SER 90 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 A O ARG 73 A ARG 91 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc5 P NA NA . A NA 215 1_555 U O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc6 P NA NA . A NA 215 1_555 U O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7BMT _atom_sites.fract_transf_matrix[1][1] 0.012678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 2 CL A 1 203 4 CL CL . E 2 CL A 1 204 5 CL CL . F 2 CL A 1 205 6 CL CL . G 2 CL A 1 206 8 CL CL . H 2 CL A 1 207 9 CL CL . I 2 CL A 1 208 10 CL CL . J 2 CL A 1 209 11 CL CL . K 2 CL A 1 210 12 CL CL . L 2 CL A 1 211 13 CL CL . M 2 CL A 1 212 14 CL CL . N 2 CL A 1 213 15 CL CL . O 2 CL A 1 214 24 CL CL . P 3 NA A 1 215 20 NA NA . Q 4 EDO A 1 216 1 EDO EDO . R 4 EDO A 1 217 3 EDO EDO . S 4 EDO A 1 218 4 EDO EDO . T 4 EDO A 1 219 6 EDO EDO . U 5 HOH A 1 301 102 HOH HOH . U 5 HOH A 2 302 234 HOH HOH . U 5 HOH A 3 303 95 HOH HOH . U 5 HOH A 4 304 79 HOH HOH . U 5 HOH A 5 305 207 HOH HOH . U 5 HOH A 6 306 39 HOH HOH . U 5 HOH A 7 307 163 HOH HOH . U 5 HOH A 8 308 203 HOH HOH . U 5 HOH A 9 309 154 HOH HOH . U 5 HOH A 10 310 200 HOH HOH . U 5 HOH A 11 311 235 HOH HOH . U 5 HOH A 12 312 208 HOH HOH . U 5 HOH A 13 313 80 HOH HOH . U 5 HOH A 14 314 237 HOH HOH . U 5 HOH A 15 315 229 HOH HOH . U 5 HOH A 16 316 25 HOH HOH . U 5 HOH A 17 317 34 HOH HOH . U 5 HOH A 18 318 231 HOH HOH . U 5 HOH A 19 319 119 HOH HOH . U 5 HOH A 20 320 222 HOH HOH . U 5 HOH A 21 321 103 HOH HOH . U 5 HOH A 22 322 84 HOH HOH . U 5 HOH A 23 323 7 HOH HOH . U 5 HOH A 24 324 224 HOH HOH . U 5 HOH A 25 325 131 HOH HOH . U 5 HOH A 26 326 46 HOH HOH . U 5 HOH A 27 327 20 HOH HOH . U 5 HOH A 28 328 192 HOH HOH . U 5 HOH A 29 329 143 HOH HOH . U 5 HOH A 30 330 91 HOH HOH . U 5 HOH A 31 331 50 HOH HOH . U 5 HOH A 32 332 98 HOH HOH . U 5 HOH A 33 333 70 HOH HOH . U 5 HOH A 34 334 72 HOH HOH . U 5 HOH A 35 335 156 HOH HOH . U 5 HOH A 36 336 108 HOH HOH . U 5 HOH A 37 337 106 HOH HOH . U 5 HOH A 38 338 87 HOH HOH . U 5 HOH A 39 339 78 HOH HOH . U 5 HOH A 40 340 30 HOH HOH . U 5 HOH A 41 341 110 HOH HOH . U 5 HOH A 42 342 43 HOH HOH . U 5 HOH A 43 343 89 HOH HOH . U 5 HOH A 44 344 243 HOH HOH . U 5 HOH A 45 345 196 HOH HOH . U 5 HOH A 46 346 56 HOH HOH . U 5 HOH A 47 347 93 HOH HOH . U 5 HOH A 48 348 199 HOH HOH . U 5 HOH A 49 349 17 HOH HOH . U 5 HOH A 50 350 73 HOH HOH . U 5 HOH A 51 351 48 HOH HOH . U 5 HOH A 52 352 45 HOH HOH . U 5 HOH A 53 353 69 HOH HOH . U 5 HOH A 54 354 26 HOH HOH . U 5 HOH A 55 355 10 HOH HOH . U 5 HOH A 56 356 54 HOH HOH . U 5 HOH A 57 357 27 HOH HOH . U 5 HOH A 58 358 35 HOH HOH . U 5 HOH A 59 359 41 HOH HOH . U 5 HOH A 60 360 77 HOH HOH . U 5 HOH A 61 361 18 HOH HOH . U 5 HOH A 62 362 115 HOH HOH . U 5 HOH A 63 363 52 HOH HOH . U 5 HOH A 64 364 32 HOH HOH . U 5 HOH A 65 365 152 HOH HOH . U 5 HOH A 66 366 22 HOH HOH . U 5 HOH A 67 367 139 HOH HOH . U 5 HOH A 68 368 155 HOH HOH . U 5 HOH A 69 369 47 HOH HOH . U 5 HOH A 70 370 245 HOH HOH . U 5 HOH A 71 371 2 HOH HOH . U 5 HOH A 72 372 118 HOH HOH . U 5 HOH A 73 373 60 HOH HOH . U 5 HOH A 74 374 68 HOH HOH . U 5 HOH A 75 375 242 HOH HOH . U 5 HOH A 76 376 16 HOH HOH . U 5 HOH A 77 377 62 HOH HOH . U 5 HOH A 78 378 61 HOH HOH . U 5 HOH A 79 379 75 HOH HOH . U 5 HOH A 80 380 6 HOH HOH . U 5 HOH A 81 381 135 HOH HOH . U 5 HOH A 82 382 82 HOH HOH . U 5 HOH A 83 383 141 HOH HOH . U 5 HOH A 84 384 86 HOH HOH . U 5 HOH A 85 385 109 HOH HOH . U 5 HOH A 86 386 246 HOH HOH . U 5 HOH A 87 387 104 HOH HOH . U 5 HOH A 88 388 232 HOH HOH . U 5 HOH A 89 389 76 HOH HOH . U 5 HOH A 90 390 14 HOH HOH . U 5 HOH A 91 391 197 HOH HOH . U 5 HOH A 92 392 182 HOH HOH . U 5 HOH A 93 393 21 HOH HOH . U 5 HOH A 94 394 23 HOH HOH . U 5 HOH A 95 395 36 HOH HOH . U 5 HOH A 96 396 42 HOH HOH . U 5 HOH A 97 397 65 HOH HOH . U 5 HOH A 98 398 233 HOH HOH . U 5 HOH A 99 399 71 HOH HOH . U 5 HOH A 100 400 90 HOH HOH . U 5 HOH A 101 401 250 HOH HOH . U 5 HOH A 102 402 148 HOH HOH . U 5 HOH A 103 403 51 HOH HOH . U 5 HOH A 104 404 105 HOH HOH . U 5 HOH A 105 405 171 HOH HOH . U 5 HOH A 106 406 251 HOH HOH . U 5 HOH A 107 407 40 HOH HOH . U 5 HOH A 108 408 33 HOH HOH . U 5 HOH A 109 409 134 HOH HOH . U 5 HOH A 110 410 53 HOH HOH . U 5 HOH A 111 411 37 HOH HOH . U 5 HOH A 112 412 55 HOH HOH . U 5 HOH A 113 413 223 HOH HOH . U 5 HOH A 114 414 28 HOH HOH . U 5 HOH A 115 415 220 HOH HOH . U 5 HOH A 116 416 15 HOH HOH . U 5 HOH A 117 417 59 HOH HOH . U 5 HOH A 118 418 67 HOH HOH . U 5 HOH A 119 419 19 HOH HOH . U 5 HOH A 120 420 205 HOH HOH . U 5 HOH A 121 421 57 HOH HOH . U 5 HOH A 122 422 92 HOH HOH . U 5 HOH A 123 423 165 HOH HOH . U 5 HOH A 124 424 29 HOH HOH . U 5 HOH A 125 425 8 HOH HOH . U 5 HOH A 126 426 252 HOH HOH . U 5 HOH A 127 427 216 HOH HOH . U 5 HOH A 128 428 38 HOH HOH . U 5 HOH A 129 429 212 HOH HOH . U 5 HOH A 130 430 191 HOH HOH . U 5 HOH A 131 431 44 HOH HOH . U 5 HOH A 132 432 240 HOH HOH . U 5 HOH A 133 433 58 HOH HOH . U 5 HOH A 134 434 239 HOH HOH . U 5 HOH A 135 435 210 HOH HOH . U 5 HOH A 136 436 49 HOH HOH . U 5 HOH A 137 437 204 HOH HOH . U 5 HOH A 138 438 228 HOH HOH . U 5 HOH A 139 439 100 HOH HOH . U 5 HOH A 140 440 244 HOH HOH . U 5 HOH A 141 441 201 HOH HOH . U 5 HOH A 142 442 211 HOH HOH . U 5 HOH A 143 443 96 HOH HOH . U 5 HOH A 144 444 215 HOH HOH . U 5 HOH A 145 445 209 HOH HOH . U 5 HOH A 146 446 218 HOH HOH . U 5 HOH A 147 447 214 HOH HOH . U 5 HOH A 148 448 219 HOH HOH . U 5 HOH A 149 449 230 HOH HOH . U 5 HOH A 150 450 206 HOH HOH . U 5 HOH A 151 451 164 HOH HOH . U 5 HOH A 152 452 227 HOH HOH . U 5 HOH A 153 453 236 HOH HOH . U 5 HOH A 154 454 213 HOH HOH . U 5 HOH A 155 455 172 HOH HOH . U 5 HOH A 156 456 112 HOH HOH . U 5 HOH A 157 457 83 HOH HOH . U 5 HOH A 158 458 225 HOH HOH . U 5 HOH A 159 459 185 HOH HOH . U 5 HOH A 160 460 133 HOH HOH . U 5 HOH A 161 461 249 HOH HOH . U 5 HOH A 162 462 226 HOH HOH . U 5 HOH A 163 463 74 HOH HOH . U 5 HOH A 164 464 113 HOH HOH . U 5 HOH A 165 465 189 HOH HOH . U 5 HOH A 166 466 64 HOH HOH . U 5 HOH A 167 467 241 HOH HOH . U 5 HOH A 168 468 247 HOH HOH . U 5 HOH A 169 469 221 HOH HOH . U 5 HOH A 170 470 186 HOH HOH . U 5 HOH A 171 471 147 HOH HOH . U 5 HOH A 172 472 194 HOH HOH . U 5 HOH A 173 473 117 HOH HOH . U 5 HOH A 174 474 116 HOH HOH . U 5 HOH A 175 475 120 HOH HOH . U 5 HOH A 176 476 132 HOH HOH . U 5 HOH A 177 477 126 HOH HOH . U 5 HOH A 178 478 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . Q 4 3.06 22.25 5.64 0.5 12.05 ? C1 EDO 216 A 1 HETATM 2 C C1 EDO . B . Q 4 3.584 22.734 5.1 0.5 11.8 ? C1 EDO 216 A 1 HETATM 3 O O1 EDO . A . Q 4 3.984 21.637 6.527 0.5 11.2 ? O1 EDO 216 A 1 HETATM 4 O O1 EDO . B . Q 4 4.745 21.941 5.536 0.5 10.18 ? O1 EDO 216 A 1 HETATM 5 C C2 EDO . A . Q 4 3.174 23.7 5.863 0.5 12.14 ? C2 EDO 216 A 1 HETATM 6 C C2 EDO . B . Q 4 3.581 24.148 5.576 0.5 13.71 ? C2 EDO 216 A 1 HETATM 7 O O2 EDO . A . Q 4 4.492 24.162 5.287 0.5 12.41 ? O2 EDO 216 A 1 HETATM 8 O O2 EDO . B . Q 4 3.729 24.252 7.016 0.5 13.2 ? O2 EDO 216 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #