data_7BND
#
_model_server_result.job_id            Z03ty5wFgUcawWvOACksrw 
_model_server_result.datetime_utc      '2025-01-10 17:16:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    7BND 
#
_exptl.entry_id    7BND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BND 
_cell.length_a            59.62 
_cell.length_b            72.22 
_cell.length_c            78.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7BND 
_atom_sites.fract_transf_matrix[1][1]    0.016773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 462 NAG NAG . 
C 3 SO4 A 1 502 471 SO4 SO4 . 
D 3 SO4 A 1 503 472 SO4 SO4 . 
E 3 SO4 A 1 504 473 SO4 SO4 . 
F 3 SO4 A 1 505 474 SO4 SO4 . 
G 3 SO4 A 1 506 475 SO4 SO4 . 
H 4 GOL A 1 507 485 GOL GOL . 
I 5 U5E A 1 508 701 U5E XXX . 
J 3 SO4 A 1 509 1 SO4 SO4 . 
K 6 HOH A 1 601 595 HOH HOH . 
K 6 HOH A 2 602 577 HOH HOH . 
K 6 HOH A 3 603 583 HOH HOH . 
K 6 HOH A 4 604 512 HOH HOH . 
K 6 HOH A 5 605 535 HOH HOH . 
K 6 HOH A 6 606 610 HOH HOH . 
K 6 HOH A 7 607 506 HOH HOH . 
K 6 HOH A 8 608 615 HOH HOH . 
K 6 HOH A 9 609 563 HOH HOH . 
K 6 HOH A 10 610 503 HOH HOH . 
K 6 HOH A 11 611 507 HOH HOH . 
K 6 HOH A 12 612 622 HOH HOH . 
K 6 HOH A 13 613 617 HOH HOH . 
K 6 HOH A 14 614 590 HOH HOH . 
K 6 HOH A 15 615 513 HOH HOH . 
K 6 HOH A 16 616 611 HOH HOH . 
K 6 HOH A 17 617 600 HOH HOH . 
K 6 HOH A 18 618 604 HOH HOH . 
K 6 HOH A 19 619 515 HOH HOH . 
K 6 HOH A 20 620 580 HOH HOH . 
K 6 HOH A 21 621 566 HOH HOH . 
K 6 HOH A 22 622 584 HOH HOH . 
K 6 HOH A 23 623 528 HOH HOH . 
K 6 HOH A 24 624 524 HOH HOH . 
K 6 HOH A 25 625 504 HOH HOH . 
K 6 HOH A 26 626 587 HOH HOH . 
K 6 HOH A 27 627 536 HOH HOH . 
K 6 HOH A 28 628 510 HOH HOH . 
K 6 HOH A 29 629 531 HOH HOH . 
K 6 HOH A 30 630 508 HOH HOH . 
K 6 HOH A 31 631 616 HOH HOH . 
K 6 HOH A 32 632 518 HOH HOH . 
K 6 HOH A 33 633 526 HOH HOH . 
K 6 HOH A 34 634 603 HOH HOH . 
K 6 HOH A 35 635 560 HOH HOH . 
K 6 HOH A 36 636 559 HOH HOH . 
K 6 HOH A 37 637 597 HOH HOH . 
K 6 HOH A 38 638 572 HOH HOH . 
K 6 HOH A 39 639 602 HOH HOH . 
K 6 HOH A 40 640 562 HOH HOH . 
K 6 HOH A 41 641 520 HOH HOH . 
K 6 HOH A 42 642 605 HOH HOH . 
K 6 HOH A 43 643 593 HOH HOH . 
K 6 HOH A 44 644 601 HOH HOH . 
K 6 HOH A 45 645 612 HOH HOH . 
K 6 HOH A 46 646 567 HOH HOH . 
K 6 HOH A 47 647 623 HOH HOH . 
K 6 HOH A 48 648 614 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 -3.792 20.852 -1.068 1 58.58 ? C1 NAG 501 A 1 
HETATM 2 C C2 NAG . . . B 2 -4.83 21.562 -1.926 1 69.37 ? C2 NAG 501 A 1 
HETATM 3 C C3 NAG . . . B 2 -6.198 21.49 -1.258 1 66.27 ? C3 NAG 501 A 1 
HETATM 4 C C4 NAG . . . B 2 -6.561 20.042 -0.955 1 62.82 ? C4 NAG 501 A 1 
HETATM 5 C C5 NAG . . . B 2 -5.448 19.372 -0.153 1 69.02 ? C5 NAG 501 A 1 
HETATM 6 C C6 NAG . . . B 2 -5.682 17.894 0.061 1 71.36 ? C6 NAG 501 A 1 
HETATM 7 C C7 NAG . . . B 2 -3.888 23.353 -3.313 1 77.87 ? C7 NAG 501 A 1 
HETATM 8 C C8 NAG . . . B 2 -3.56 24.813 -3.398 1 76.4 ? C8 NAG 501 A 1 
HETATM 9 N N2 NAG . . . B 2 -4.451 22.944 -2.171 1 71.33 ? N2 NAG 501 A 1 
HETATM 10 O O3 NAG . . . B 2 -7.174 22.069 -2.117 1 64.73 ? O3 NAG 501 A 1 
HETATM 11 O O4 NAG . . . B 2 -7.77 19.992 -0.207 1 70.61 ? O4 NAG 501 A 1 
HETATM 12 O O5 NAG . . . B 2 -4.197 19.496 -0.847 1 68.13 ? O5 NAG 501 A 1 
HETATM 13 O O6 NAG . . . B 2 -5.705 17.188 -1.172 1 65.9 ? O6 NAG 501 A 1 
HETATM 14 O O7 NAG . . . B 2 -3.655 22.578 -4.237 1 77.25 ? O7 NAG 501 A 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#