data_7BND
#
_model_server_result.job_id            Wockr5CLCBbGi8uT73cbqA 
_model_server_result.datetime_utc      '2025-01-10 17:16:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bnd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":508}' 
#
_entry.id    7BND 
#
_exptl.entry_id    7BND 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              243.324 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-methyl-4,5-dihydrobenzo[g]benzothiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BND 
_cell.length_a            59.62 
_cell.length_b            72.22 
_cell.length_c            78.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BND 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C14 H13 N O S' 
_chem_comp.formula_weight    243.324 
_chem_comp.id                U5E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-methyl-4,5-dihydrobenzo[g]benzothiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ~{N}-methyl-4,5-dihydrobenzo[g][1]benzothiole-2-carboxamide;N-methyl-4,5-dihydrobenzo[g][1]benzothiole-2-carboxamide;N-Methyl-4,5-dihydronaphtho[1,2-b]thiophene-2-carboxamide;N-methyl-4,5-dihydrobenzo[g]benzothiophene-2-carboxamide;N-methyl-4H,5H-naphtho[1,2-b]thiophene-2-carboxamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 U5E doub 405 n y 
C13 C12 U5E sing 406 n y 
C14 C15 U5E sing 407 n y 
S17 C16 U5E sing 408 n y 
S17 C05 U5E sing 409 n y 
C12 C11 U5E doub 410 n y 
O04 C03 U5E doub 411 n n 
C15 C16 U5E sing 412 n n 
C15 C10 U5E doub 413 n y 
C03 C05 U5E sing 414 n n 
C03 N02 U5E sing 415 n n 
C16 C07 U5E doub 416 n y 
C05 C06 U5E doub 417 n y 
C01 N02 U5E sing 418 n n 
C11 C10 U5E sing 419 n y 
C10 C09 U5E sing 420 n n 
C07 C06 U5E sing 421 n y 
C07 C08 U5E sing 422 n n 
C08 C09 U5E sing 423 n n 
C01 H1 U5E sing 424 n n 
C01 H2 U5E sing 425 n n 
C01 H3 U5E sing 426 n n 
C06 H4 U5E sing 427 n n 
C08 H5 U5E sing 428 n n 
C08 H6 U5E sing 429 n n 
C09 H7 U5E sing 430 n n 
C09 H8 U5E sing 431 n n 
C11 H9 U5E sing 432 n n 
C12 H10 U5E sing 433 n n 
C13 H11 U5E sing 434 n n 
C14 H12 U5E sing 435 n n 
N02 H13 U5E sing 436 n n 
#
_atom_sites.entry_id                     7BND 
_atom_sites.fract_transf_matrix[1][1]    0.016773 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013847 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012698 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 462 NAG NAG . 
C 3 SO4 A 1 502 471 SO4 SO4 . 
D 3 SO4 A 1 503 472 SO4 SO4 . 
E 3 SO4 A 1 504 473 SO4 SO4 . 
F 3 SO4 A 1 505 474 SO4 SO4 . 
G 3 SO4 A 1 506 475 SO4 SO4 . 
H 4 GOL A 1 507 485 GOL GOL . 
I 5 U5E A 1 508 701 U5E XXX . 
J 3 SO4 A 1 509 1 SO4 SO4 . 
K 6 HOH A 1 601 595 HOH HOH . 
K 6 HOH A 2 602 577 HOH HOH . 
K 6 HOH A 3 603 583 HOH HOH . 
K 6 HOH A 4 604 512 HOH HOH . 
K 6 HOH A 5 605 535 HOH HOH . 
K 6 HOH A 6 606 610 HOH HOH . 
K 6 HOH A 7 607 506 HOH HOH . 
K 6 HOH A 8 608 615 HOH HOH . 
K 6 HOH A 9 609 563 HOH HOH . 
K 6 HOH A 10 610 503 HOH HOH . 
K 6 HOH A 11 611 507 HOH HOH . 
K 6 HOH A 12 612 622 HOH HOH . 
K 6 HOH A 13 613 617 HOH HOH . 
K 6 HOH A 14 614 590 HOH HOH . 
K 6 HOH A 15 615 513 HOH HOH . 
K 6 HOH A 16 616 611 HOH HOH . 
K 6 HOH A 17 617 600 HOH HOH . 
K 6 HOH A 18 618 604 HOH HOH . 
K 6 HOH A 19 619 515 HOH HOH . 
K 6 HOH A 20 620 580 HOH HOH . 
K 6 HOH A 21 621 566 HOH HOH . 
K 6 HOH A 22 622 584 HOH HOH . 
K 6 HOH A 23 623 528 HOH HOH . 
K 6 HOH A 24 624 524 HOH HOH . 
K 6 HOH A 25 625 504 HOH HOH . 
K 6 HOH A 26 626 587 HOH HOH . 
K 6 HOH A 27 627 536 HOH HOH . 
K 6 HOH A 28 628 510 HOH HOH . 
K 6 HOH A 29 629 531 HOH HOH . 
K 6 HOH A 30 630 508 HOH HOH . 
K 6 HOH A 31 631 616 HOH HOH . 
K 6 HOH A 32 632 518 HOH HOH . 
K 6 HOH A 33 633 526 HOH HOH . 
K 6 HOH A 34 634 603 HOH HOH . 
K 6 HOH A 35 635 560 HOH HOH . 
K 6 HOH A 36 636 559 HOH HOH . 
K 6 HOH A 37 637 597 HOH HOH . 
K 6 HOH A 38 638 572 HOH HOH . 
K 6 HOH A 39 639 602 HOH HOH . 
K 6 HOH A 40 640 562 HOH HOH . 
K 6 HOH A 41 641 520 HOH HOH . 
K 6 HOH A 42 642 605 HOH HOH . 
K 6 HOH A 43 643 593 HOH HOH . 
K 6 HOH A 44 644 601 HOH HOH . 
K 6 HOH A 45 645 612 HOH HOH . 
K 6 HOH A 46 646 567 HOH HOH . 
K 6 HOH A 47 647 623 HOH HOH . 
K 6 HOH A 48 648 614 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 U5E . . . I 5 9.275 -3.11 5.882 1 49.65 ? C01 U5E 508 A 1 
HETATM 2 C C03 U5E . . . I 5 6.796 -3.308 5.549 1 54.94 ? C03 U5E 508 A 1 
HETATM 3 C C05 U5E . . . I 5 5.495 -4.106 5.665 1 58.94 ? C05 U5E 508 A 1 
HETATM 4 C C06 U5E . . . I 5 5.309 -5.313 6.303 1 58.23 ? C06 U5E 508 A 1 
HETATM 5 C C07 U5E . . . I 5 3.994 -5.839 6.26 1 57.78 ? C07 U5E 508 A 1 
HETATM 6 C C08 U5E . . . I 5 3.549 -7.177 6.908 1 52.86 ? C08 U5E 508 A 1 
HETATM 7 C C09 U5E . . . I 5 2.031 -7.207 7.233 1 59.09 ? C09 U5E 508 A 1 
HETATM 8 C C10 U5E . . . I 5 1.178 -6.441 6.175 1 62.29 ? C10 U5E 508 A 1 
HETATM 9 C C11 U5E . . . I 5 -0.189 -6.779 5.981 1 55.91 ? C11 U5E 508 A 1 
HETATM 10 C C12 U5E . . . I 5 -0.945 -6.092 5.033 1 54.7 ? C12 U5E 508 A 1 
HETATM 11 C C13 U5E . . . I 5 -0.361 -5.077 4.28 1 55.53 ? C13 U5E 508 A 1 
HETATM 12 C C14 U5E . . . I 5 0.972 -4.747 4.469 1 52.93 ? C14 U5E 508 A 1 
HETATM 13 C C15 U5E . . . I 5 1.747 -5.45 5.443 1 59.81 ? C15 U5E 508 A 1 
HETATM 14 C C16 U5E . . . I 5 3.084 -5.085 5.592 1 59.52 ? C16 U5E 508 A 1 
HETATM 15 N N02 U5E . . . I 5 8.051 -3.882 6 1 53.85 ? N02 U5E 508 A 1 
HETATM 16 O O04 U5E . . . I 5 6.79 -2.215 5.09 1 48.8 ? O04 U5E 508 A 1 
HETATM 17 S S17 U5E . . . I 5 3.953 -3.686 5.018 1 68.02 ? S17 U5E 508 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#