data_7BNE
#
_model_server_result.job_id            cSoow_FUgS-pk7gqQvHJNQ 
_model_server_result.datetime_utc      '2024-11-16 16:30:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":504}' 
#
_entry.id    7BNE 
#
_exptl.entry_id    7BNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BNE 
_cell.length_a            60.29 
_cell.length_b            71.69 
_cell.length_c            78.17 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 250 n n 
C1 O1 NAG sing 251 n n 
C1 O5 NAG sing 252 n n 
C1 H1 NAG sing 253 n n 
C2 C3 NAG sing 254 n n 
C2 N2 NAG sing 255 n n 
C2 H2 NAG sing 256 n n 
C3 C4 NAG sing 257 n n 
C3 O3 NAG sing 258 n n 
C3 H3 NAG sing 259 n n 
C4 C5 NAG sing 260 n n 
C4 O4 NAG sing 261 n n 
C4 H4 NAG sing 262 n n 
C5 C6 NAG sing 263 n n 
C5 O5 NAG sing 264 n n 
C5 H5 NAG sing 265 n n 
C6 O6 NAG sing 266 n n 
C6 H61 NAG sing 267 n n 
C6 H62 NAG sing 268 n n 
C7 C8 NAG sing 269 n n 
C7 N2 NAG sing 270 n n 
C7 O7 NAG doub 271 n n 
C8 H81 NAG sing 272 n n 
C8 H82 NAG sing 273 n n 
C8 H83 NAG sing 274 n n 
N2 HN2 NAG sing 275 n n 
O1 HO1 NAG sing 276 n n 
O3 HO3 NAG sing 277 n n 
O4 HO4 NAG sing 278 n n 
O6 HO6 NAG sing 279 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7BNE 
_atom_sites.fract_transf_matrix[1][1]    0.016586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 502 GOL GOL . 
C 2 GOL A 1 502 504 GOL GOL . 
D 3 SO4 A 1 503 551 SO4 SO4 . 
E 4 NAG A 1 504 901 NAG NAG . 
F 3 SO4 A 1 505 911 SO4 SO4 . 
G 5 NCT A 1 506 1 NCT NCT . 
H 6 HOH A 1 601 769 HOH HOH . 
H 6 HOH A 2 602 751 HOH HOH . 
H 6 HOH A 3 603 869 HOH HOH . 
H 6 HOH A 4 604 820 HOH HOH . 
H 6 HOH A 5 605 2 HOH HOH . 
H 6 HOH A 6 606 868 HOH HOH . 
H 6 HOH A 7 607 712 HOH HOH . 
H 6 HOH A 8 608 810 HOH HOH . 
H 6 HOH A 9 609 825 HOH HOH . 
H 6 HOH A 10 610 847 HOH HOH . 
H 6 HOH A 11 611 731 HOH HOH . 
H 6 HOH A 12 612 862 HOH HOH . 
H 6 HOH A 13 613 861 HOH HOH . 
H 6 HOH A 14 614 824 HOH HOH . 
H 6 HOH A 15 615 775 HOH HOH . 
H 6 HOH A 16 616 846 HOH HOH . 
H 6 HOH A 17 617 803 HOH HOH . 
H 6 HOH A 18 618 790 HOH HOH . 
H 6 HOH A 19 619 828 HOH HOH . 
H 6 HOH A 20 620 776 HOH HOH . 
H 6 HOH A 21 621 705 HOH HOH . 
H 6 HOH A 22 622 827 HOH HOH . 
H 6 HOH A 23 623 765 HOH HOH . 
H 6 HOH A 24 624 716 HOH HOH . 
H 6 HOH A 25 625 701 HOH HOH . 
H 6 HOH A 26 626 757 HOH HOH . 
H 6 HOH A 27 627 787 HOH HOH . 
H 6 HOH A 28 628 783 HOH HOH . 
H 6 HOH A 29 629 821 HOH HOH . 
H 6 HOH A 30 630 784 HOH HOH . 
H 6 HOH A 31 631 815 HOH HOH . 
H 6 HOH A 32 632 845 HOH HOH . 
H 6 HOH A 33 633 704 HOH HOH . 
H 6 HOH A 34 634 837 HOH HOH . 
H 6 HOH A 35 635 818 HOH HOH . 
H 6 HOH A 36 636 863 HOH HOH . 
H 6 HOH A 37 637 839 HOH HOH . 
H 6 HOH A 38 638 1 HOH HOH . 
H 6 HOH A 39 639 795 HOH HOH . 
H 6 HOH A 40 640 864 HOH HOH . 
H 6 HOH A 41 641 865 HOH HOH . 
H 6 HOH A 42 642 802 HOH HOH . 
H 6 HOH A 43 643 708 HOH HOH . 
H 6 HOH A 44 644 764 HOH HOH . 
H 6 HOH A 45 645 782 HOH HOH . 
H 6 HOH A 46 646 711 HOH HOH . 
H 6 HOH A 47 647 773 HOH HOH . 
H 6 HOH A 48 648 848 HOH HOH . 
H 6 HOH A 49 649 853 HOH HOH . 
H 6 HOH A 50 650 726 HOH HOH . 
H 6 HOH A 51 651 801 HOH HOH . 
H 6 HOH A 52 652 814 HOH HOH . 
H 6 HOH A 53 653 849 HOH HOH . 
H 6 HOH A 54 654 788 HOH HOH . 
H 6 HOH A 55 655 729 HOH HOH . 
H 6 HOH A 56 656 710 HOH HOH . 
H 6 HOH A 57 657 844 HOH HOH . 
H 6 HOH A 58 658 829 HOH HOH . 
H 6 HOH A 59 659 859 HOH HOH . 
H 6 HOH A 60 660 779 HOH HOH . 
H 6 HOH A 61 661 771 HOH HOH . 
H 6 HOH A 62 662 702 HOH HOH . 
H 6 HOH A 63 663 724 HOH HOH . 
H 6 HOH A 64 664 758 HOH HOH . 
H 6 HOH A 65 665 817 HOH HOH . 
H 6 HOH A 66 666 808 HOH HOH . 
H 6 HOH A 67 667 722 HOH HOH . 
H 6 HOH A 68 668 734 HOH HOH . 
H 6 HOH A 69 669 777 HOH HOH . 
H 6 HOH A 70 670 706 HOH HOH . 
H 6 HOH A 71 671 857 HOH HOH . 
H 6 HOH A 72 672 812 HOH HOH . 
H 6 HOH A 73 673 781 HOH HOH . 
H 6 HOH A 74 674 760 HOH HOH . 
H 6 HOH A 75 675 804 HOH HOH . 
H 6 HOH A 76 676 796 HOH HOH . 
H 6 HOH A 77 677 718 HOH HOH . 
H 6 HOH A 78 678 786 HOH HOH . 
H 6 HOH A 79 679 838 HOH HOH . 
H 6 HOH A 80 680 813 HOH HOH . 
H 6 HOH A 81 681 855 HOH HOH . 
H 6 HOH A 82 682 715 HOH HOH . 
H 6 HOH A 83 683 833 HOH HOH . 
H 6 HOH A 84 684 789 HOH HOH . 
H 6 HOH A 85 685 763 HOH HOH . 
H 6 HOH A 86 686 840 HOH HOH . 
H 6 HOH A 87 687 870 HOH HOH . 
H 6 HOH A 88 688 780 HOH HOH . 
H 6 HOH A 89 689 791 HOH HOH . 
H 6 HOH A 90 690 762 HOH HOH . 
H 6 HOH A 91 691 830 HOH HOH . 
H 6 HOH A 92 692 858 HOH HOH . 
H 6 HOH A 93 693 871 HOH HOH . 
H 6 HOH A 94 694 807 HOH HOH . 
H 6 HOH A 95 695 819 HOH HOH . 
H 6 HOH A 96 696 811 HOH HOH . 
H 6 HOH A 97 697 806 HOH HOH . 
H 6 HOH A 98 698 797 HOH HOH . 
H 6 HOH A 99 699 873 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 4 -4.116 21.048 -0.883 1 52.39 ? C1 NAG 504 A 1 
HETATM 2 C C2 NAG . . . E 4 -5.132 21.747 -1.789 1 62.79 ? C2 NAG 504 A 1 
HETATM 3 C C3 NAG . . . E 4 -6.549 21.572 -1.24 1 61.63 ? C3 NAG 504 A 1 
HETATM 4 C C4 NAG . . . E 4 -6.849 20.101 -0.981 1 67.24 ? C4 NAG 504 A 1 
HETATM 5 C C5 NAG . . . E 4 -5.77 19.501 -0.087 1 62.18 ? C5 NAG 504 A 1 
HETATM 6 C C6 NAG . . . E 4 -5.944 18.019 0.157 1 61.61 ? C6 NAG 504 A 1 
HETATM 7 C C7 NAG . . . E 4 -3.993 23.63 -2.879 1 74.15 ? C7 NAG 504 A 1 
HETATM 8 C C8 NAG . . . E 4 -3.773 25.112 -2.877 1 72.97 ? C8 NAG 504 A 1 
HETATM 9 N N2 NAG . . . E 4 -4.812 23.158 -1.933 1 62 ? N2 NAG 504 A 1 
HETATM 10 O O3 NAG . . . E 4 -7.481 22.095 -2.179 1 66.43 ? O3 NAG 504 A 1 
HETATM 11 O O4 NAG . . . E 4 -8.119 19.97 -0.352 1 55.72 ? O4 NAG 504 A 1 
HETATM 12 O O5 NAG . . . E 4 -4.488 19.675 -0.707 1 60.89 ? O5 NAG 504 A 1 
HETATM 13 O O6 NAG . . . E 4 -6.016 17.287 -1.059 1 59.83 ? O6 NAG 504 A 1 
HETATM 14 O O7 NAG . . . E 4 -3.452 22.892 -3.699 1 72.45 ? O7 NAG 504 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#