data_7BNK # _model_server_result.job_id B2KhjLmyff3btlp1e2qENg _model_server_result.datetime_utc '2024-11-24 15:54:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7BNK # _exptl.entry_id 7BNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BNK _cell.length_a 44.243 _cell.length_b 80.706 _cell.length_c 143.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 93 A GLU 126 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A OE2 GLU 93 A GLU 126 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc3 A OD1 ASN 94 A ASN 127 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 E O4P TS6 . A TS6 403 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc5 F O3B CDP . A CDP 404 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc6 F O2A CDP . A CDP 404 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc7 B OE1 GLU 93 B GLU 126 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc8 B OE2 GLU 93 B GLU 126 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc9 B OD1 ASN 94 B ASN 127 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc10 J O3P TS6 . B TS6 403 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc11 K O1B CDP . B CDP 404 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 K O1A CDP . B CDP 404 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 7BNK _atom_sites.fract_transf_matrix[1][1] 0.022602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 401 GOL GOL . D 3 PEG A 1 402 501 PEG PEG . E 4 TS6 A 1 403 502 TS6 TS6 . F 5 CDP A 1 404 503 CDP CDP . G 6 MG A 1 405 2 MG MG . H 3 PEG B 1 401 401 PEG PEG . I 3 PEG B 1 402 501 PEG PEG . J 4 TS6 B 1 403 502 TS6 TS6 . K 5 CDP B 1 404 503 CDP CDP . L 6 MG B 1 405 1 MG MG . M 7 HOH A 1 501 59 HOH HOH . M 7 HOH A 2 502 74 HOH HOH . M 7 HOH A 3 503 17 HOH HOH . M 7 HOH A 4 504 132 HOH HOH . M 7 HOH A 5 505 82 HOH HOH . M 7 HOH A 6 506 20 HOH HOH . M 7 HOH A 7 507 128 HOH HOH . M 7 HOH A 8 508 33 HOH HOH . M 7 HOH A 9 509 18 HOH HOH . M 7 HOH A 10 510 118 HOH HOH . M 7 HOH A 11 511 41 HOH HOH . M 7 HOH A 12 512 14 HOH HOH . M 7 HOH A 13 513 2 HOH HOH . M 7 HOH A 14 514 67 HOH HOH . M 7 HOH A 15 515 45 HOH HOH . M 7 HOH A 16 516 103 HOH HOH . M 7 HOH A 17 517 34 HOH HOH . M 7 HOH A 18 518 192 HOH HOH . M 7 HOH A 19 519 46 HOH HOH . M 7 HOH A 20 520 140 HOH HOH . M 7 HOH A 21 521 31 HOH HOH . M 7 HOH A 22 522 145 HOH HOH . M 7 HOH A 23 523 12 HOH HOH . M 7 HOH A 24 524 38 HOH HOH . M 7 HOH A 25 525 83 HOH HOH . M 7 HOH A 26 526 21 HOH HOH . M 7 HOH A 27 527 100 HOH HOH . M 7 HOH A 28 528 28 HOH HOH . M 7 HOH A 29 529 4 HOH HOH . M 7 HOH A 30 530 134 HOH HOH . M 7 HOH A 31 531 143 HOH HOH . M 7 HOH A 32 532 114 HOH HOH . M 7 HOH A 33 533 116 HOH HOH . M 7 HOH A 34 534 73 HOH HOH . M 7 HOH A 35 535 25 HOH HOH . M 7 HOH A 36 536 115 HOH HOH . M 7 HOH A 37 537 150 HOH HOH . M 7 HOH A 38 538 37 HOH HOH . M 7 HOH A 39 539 23 HOH HOH . M 7 HOH A 40 540 70 HOH HOH . M 7 HOH A 41 541 32 HOH HOH . M 7 HOH A 42 542 7 HOH HOH . M 7 HOH A 43 543 6 HOH HOH . M 7 HOH A 44 544 127 HOH HOH . M 7 HOH A 45 545 79 HOH HOH . M 7 HOH A 46 546 44 HOH HOH . M 7 HOH A 47 547 48 HOH HOH . M 7 HOH A 48 548 81 HOH HOH . M 7 HOH A 49 549 124 HOH HOH . M 7 HOH A 50 550 135 HOH HOH . M 7 HOH A 51 551 84 HOH HOH . M 7 HOH A 52 552 122 HOH HOH . M 7 HOH A 53 553 108 HOH HOH . M 7 HOH A 54 554 170 HOH HOH . M 7 HOH A 55 555 148 HOH HOH . M 7 HOH A 56 556 144 HOH HOH . M 7 HOH A 57 557 93 HOH HOH . M 7 HOH A 58 558 175 HOH HOH . M 7 HOH A 59 559 138 HOH HOH . M 7 HOH A 60 560 153 HOH HOH . M 7 HOH A 61 561 191 HOH HOH . M 7 HOH A 62 562 87 HOH HOH . M 7 HOH A 63 563 54 HOH HOH . M 7 HOH A 64 564 50 HOH HOH . M 7 HOH A 65 565 80 HOH HOH . M 7 HOH A 66 566 160 HOH HOH . M 7 HOH A 67 567 151 HOH HOH . M 7 HOH A 68 568 75 HOH HOH . M 7 HOH A 69 569 99 HOH HOH . M 7 HOH A 70 570 165 HOH HOH . M 7 HOH A 71 571 63 HOH HOH . M 7 HOH A 72 572 173 HOH HOH . M 7 HOH A 73 573 77 HOH HOH . M 7 HOH A 74 574 161 HOH HOH . N 7 HOH B 1 501 131 HOH HOH . N 7 HOH B 2 502 8 HOH HOH . N 7 HOH B 3 503 123 HOH HOH . N 7 HOH B 4 504 19 HOH HOH . N 7 HOH B 5 505 126 HOH HOH . N 7 HOH B 6 506 95 HOH HOH . N 7 HOH B 7 507 24 HOH HOH . N 7 HOH B 8 508 56 HOH HOH . N 7 HOH B 9 509 43 HOH HOH . N 7 HOH B 10 510 104 HOH HOH . N 7 HOH B 11 511 112 HOH HOH . N 7 HOH B 12 512 184 HOH HOH . N 7 HOH B 13 513 71 HOH HOH . N 7 HOH B 14 514 139 HOH HOH . N 7 HOH B 15 515 13 HOH HOH . N 7 HOH B 16 516 62 HOH HOH . N 7 HOH B 17 517 88 HOH HOH . N 7 HOH B 18 518 29 HOH HOH . N 7 HOH B 19 519 49 HOH HOH . N 7 HOH B 20 520 91 HOH HOH . N 7 HOH B 21 521 96 HOH HOH . N 7 HOH B 22 522 65 HOH HOH . N 7 HOH B 23 523 35 HOH HOH . N 7 HOH B 24 524 186 HOH HOH . N 7 HOH B 25 525 1 HOH HOH . N 7 HOH B 26 526 10 HOH HOH . N 7 HOH B 27 527 9 HOH HOH . N 7 HOH B 28 528 121 HOH HOH . N 7 HOH B 29 529 166 HOH HOH . N 7 HOH B 30 530 76 HOH HOH . N 7 HOH B 31 531 26 HOH HOH . N 7 HOH B 32 532 97 HOH HOH . N 7 HOH B 33 533 39 HOH HOH . N 7 HOH B 34 534 101 HOH HOH . N 7 HOH B 35 535 141 HOH HOH . N 7 HOH B 36 536 57 HOH HOH . N 7 HOH B 37 537 158 HOH HOH . N 7 HOH B 38 538 40 HOH HOH . N 7 HOH B 39 539 11 HOH HOH . N 7 HOH B 40 540 27 HOH HOH . N 7 HOH B 41 541 105 HOH HOH . N 7 HOH B 42 542 136 HOH HOH . N 7 HOH B 43 543 36 HOH HOH . N 7 HOH B 44 544 181 HOH HOH . N 7 HOH B 45 545 58 HOH HOH . N 7 HOH B 46 546 52 HOH HOH . N 7 HOH B 47 547 90 HOH HOH . N 7 HOH B 48 548 109 HOH HOH . N 7 HOH B 49 549 66 HOH HOH . N 7 HOH B 50 550 189 HOH HOH . N 7 HOH B 51 551 125 HOH HOH . N 7 HOH B 52 552 30 HOH HOH . N 7 HOH B 53 553 111 HOH HOH . N 7 HOH B 54 554 16 HOH HOH . N 7 HOH B 55 555 3 HOH HOH . N 7 HOH B 56 556 72 HOH HOH . N 7 HOH B 57 557 42 HOH HOH . N 7 HOH B 58 558 120 HOH HOH . N 7 HOH B 59 559 156 HOH HOH . N 7 HOH B 60 560 86 HOH HOH . N 7 HOH B 61 561 142 HOH HOH . N 7 HOH B 62 562 22 HOH HOH . N 7 HOH B 63 563 157 HOH HOH . N 7 HOH B 64 564 172 HOH HOH . N 7 HOH B 65 565 163 HOH HOH . N 7 HOH B 66 566 15 HOH HOH . N 7 HOH B 67 567 119 HOH HOH . N 7 HOH B 68 568 185 HOH HOH . N 7 HOH B 69 569 187 HOH HOH . N 7 HOH B 70 570 188 HOH HOH . N 7 HOH B 71 571 106 HOH HOH . N 7 HOH B 72 572 60 HOH HOH . N 7 HOH B 73 573 174 HOH HOH . N 7 HOH B 74 574 190 HOH HOH . N 7 HOH B 75 575 78 HOH HOH . N 7 HOH B 76 576 137 HOH HOH . N 7 HOH B 77 577 178 HOH HOH . N 7 HOH B 78 578 68 HOH HOH . N 7 HOH B 79 579 167 HOH HOH . N 7 HOH B 80 580 110 HOH HOH . N 7 HOH B 81 581 147 HOH HOH . N 7 HOH B 82 582 149 HOH HOH . N 7 HOH B 83 583 152 HOH HOH . N 7 HOH B 84 584 168 HOH HOH . N 7 HOH B 85 585 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -27.836 32.589 -33.6 1 73.72 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . C 2 -26.668 32.68 -32.84 1 55.8 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . C 2 -27.425 32.146 -35.031 1 72.05 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . C 2 -26.161 31.593 -35.072 1 47.56 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . C 2 -28.502 31.128 -35.464 1 74.69 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . C 2 -27.996 30.497 -36.599 1 71.74 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #