data_7BNK
#
_model_server_result.job_id            P1zPCY6Q1trBOz9_6s8uEQ 
_model_server_result.datetime_utc      '2024-11-24 15:24:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bnk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":403}' 
#
_entry.id    7BNK 
#
_exptl.entry_id    7BNK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.061 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Monothiophosphate 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BNK 
_cell.length_a            44.243 
_cell.length_b            80.706 
_cell.length_c            143.38 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BNK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 93 A GLU 126 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc2 A OE2 GLU 93 A GLU 126 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc3 A OD1 ASN 94 A ASN 127 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc4 E O4P TS6 . A TS6 403 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? 
metalc ? metalc5 F O3B CDP . A CDP 404 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 F O2A CDP . A CDP 404 1_555 G MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc7 B OE1 GLU 93 B GLU 126 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc8 B OE2 GLU 93 B GLU 126 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc9 B OD1 ASN 94 B ASN 127 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc10 J O3P TS6 . B TS6 403 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc11 K O1B CDP . B CDP 404 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc12 K O1A CDP . B CDP 404 1_555 L MG MG . B MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
#
_chem_comp.formula           'H3 O3 P S' 
_chem_comp.formula_weight    114.061 
_chem_comp.id                TS6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Monothiophosphate 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'phosphorothioic O,O,S-acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1P P TS6 doub 391 n n 
S2P P TS6 sing 392 n n 
P O3P TS6 sing 393 n n 
P O4P TS6 sing 394 n n 
S2P HS2P TS6 sing 395 n n 
O3P HO3P TS6 sing 396 n n 
O4P HO4P TS6 sing 397 n n 
#
_atom_sites.entry_id                     7BNK 
_atom_sites.fract_transf_matrix[1][1]    0.022602 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012391 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 401 GOL GOL . 
D 3 PEG A 1 402 501 PEG PEG . 
E 4 TS6 A 1 403 502 TS6 TS6 . 
F 5 CDP A 1 404 503 CDP CDP . 
G 6 MG A 1 405 2 MG MG . 
H 3 PEG B 1 401 401 PEG PEG . 
I 3 PEG B 1 402 501 PEG PEG . 
J 4 TS6 B 1 403 502 TS6 TS6 . 
K 5 CDP B 1 404 503 CDP CDP . 
L 6 MG B 1 405 1 MG MG . 
M 7 HOH A 1 501 59 HOH HOH . 
M 7 HOH A 2 502 74 HOH HOH . 
M 7 HOH A 3 503 17 HOH HOH . 
M 7 HOH A 4 504 132 HOH HOH . 
M 7 HOH A 5 505 82 HOH HOH . 
M 7 HOH A 6 506 20 HOH HOH . 
M 7 HOH A 7 507 128 HOH HOH . 
M 7 HOH A 8 508 33 HOH HOH . 
M 7 HOH A 9 509 18 HOH HOH . 
M 7 HOH A 10 510 118 HOH HOH . 
M 7 HOH A 11 511 41 HOH HOH . 
M 7 HOH A 12 512 14 HOH HOH . 
M 7 HOH A 13 513 2 HOH HOH . 
M 7 HOH A 14 514 67 HOH HOH . 
M 7 HOH A 15 515 45 HOH HOH . 
M 7 HOH A 16 516 103 HOH HOH . 
M 7 HOH A 17 517 34 HOH HOH . 
M 7 HOH A 18 518 192 HOH HOH . 
M 7 HOH A 19 519 46 HOH HOH . 
M 7 HOH A 20 520 140 HOH HOH . 
M 7 HOH A 21 521 31 HOH HOH . 
M 7 HOH A 22 522 145 HOH HOH . 
M 7 HOH A 23 523 12 HOH HOH . 
M 7 HOH A 24 524 38 HOH HOH . 
M 7 HOH A 25 525 83 HOH HOH . 
M 7 HOH A 26 526 21 HOH HOH . 
M 7 HOH A 27 527 100 HOH HOH . 
M 7 HOH A 28 528 28 HOH HOH . 
M 7 HOH A 29 529 4 HOH HOH . 
M 7 HOH A 30 530 134 HOH HOH . 
M 7 HOH A 31 531 143 HOH HOH . 
M 7 HOH A 32 532 114 HOH HOH . 
M 7 HOH A 33 533 116 HOH HOH . 
M 7 HOH A 34 534 73 HOH HOH . 
M 7 HOH A 35 535 25 HOH HOH . 
M 7 HOH A 36 536 115 HOH HOH . 
M 7 HOH A 37 537 150 HOH HOH . 
M 7 HOH A 38 538 37 HOH HOH . 
M 7 HOH A 39 539 23 HOH HOH . 
M 7 HOH A 40 540 70 HOH HOH . 
M 7 HOH A 41 541 32 HOH HOH . 
M 7 HOH A 42 542 7 HOH HOH . 
M 7 HOH A 43 543 6 HOH HOH . 
M 7 HOH A 44 544 127 HOH HOH . 
M 7 HOH A 45 545 79 HOH HOH . 
M 7 HOH A 46 546 44 HOH HOH . 
M 7 HOH A 47 547 48 HOH HOH . 
M 7 HOH A 48 548 81 HOH HOH . 
M 7 HOH A 49 549 124 HOH HOH . 
M 7 HOH A 50 550 135 HOH HOH . 
M 7 HOH A 51 551 84 HOH HOH . 
M 7 HOH A 52 552 122 HOH HOH . 
M 7 HOH A 53 553 108 HOH HOH . 
M 7 HOH A 54 554 170 HOH HOH . 
M 7 HOH A 55 555 148 HOH HOH . 
M 7 HOH A 56 556 144 HOH HOH . 
M 7 HOH A 57 557 93 HOH HOH . 
M 7 HOH A 58 558 175 HOH HOH . 
M 7 HOH A 59 559 138 HOH HOH . 
M 7 HOH A 60 560 153 HOH HOH . 
M 7 HOH A 61 561 191 HOH HOH . 
M 7 HOH A 62 562 87 HOH HOH . 
M 7 HOH A 63 563 54 HOH HOH . 
M 7 HOH A 64 564 50 HOH HOH . 
M 7 HOH A 65 565 80 HOH HOH . 
M 7 HOH A 66 566 160 HOH HOH . 
M 7 HOH A 67 567 151 HOH HOH . 
M 7 HOH A 68 568 75 HOH HOH . 
M 7 HOH A 69 569 99 HOH HOH . 
M 7 HOH A 70 570 165 HOH HOH . 
M 7 HOH A 71 571 63 HOH HOH . 
M 7 HOH A 72 572 173 HOH HOH . 
M 7 HOH A 73 573 77 HOH HOH . 
M 7 HOH A 74 574 161 HOH HOH . 
N 7 HOH B 1 501 131 HOH HOH . 
N 7 HOH B 2 502 8 HOH HOH . 
N 7 HOH B 3 503 123 HOH HOH . 
N 7 HOH B 4 504 19 HOH HOH . 
N 7 HOH B 5 505 126 HOH HOH . 
N 7 HOH B 6 506 95 HOH HOH . 
N 7 HOH B 7 507 24 HOH HOH . 
N 7 HOH B 8 508 56 HOH HOH . 
N 7 HOH B 9 509 43 HOH HOH . 
N 7 HOH B 10 510 104 HOH HOH . 
N 7 HOH B 11 511 112 HOH HOH . 
N 7 HOH B 12 512 184 HOH HOH . 
N 7 HOH B 13 513 71 HOH HOH . 
N 7 HOH B 14 514 139 HOH HOH . 
N 7 HOH B 15 515 13 HOH HOH . 
N 7 HOH B 16 516 62 HOH HOH . 
N 7 HOH B 17 517 88 HOH HOH . 
N 7 HOH B 18 518 29 HOH HOH . 
N 7 HOH B 19 519 49 HOH HOH . 
N 7 HOH B 20 520 91 HOH HOH . 
N 7 HOH B 21 521 96 HOH HOH . 
N 7 HOH B 22 522 65 HOH HOH . 
N 7 HOH B 23 523 35 HOH HOH . 
N 7 HOH B 24 524 186 HOH HOH . 
N 7 HOH B 25 525 1 HOH HOH . 
N 7 HOH B 26 526 10 HOH HOH . 
N 7 HOH B 27 527 9 HOH HOH . 
N 7 HOH B 28 528 121 HOH HOH . 
N 7 HOH B 29 529 166 HOH HOH . 
N 7 HOH B 30 530 76 HOH HOH . 
N 7 HOH B 31 531 26 HOH HOH . 
N 7 HOH B 32 532 97 HOH HOH . 
N 7 HOH B 33 533 39 HOH HOH . 
N 7 HOH B 34 534 101 HOH HOH . 
N 7 HOH B 35 535 141 HOH HOH . 
N 7 HOH B 36 536 57 HOH HOH . 
N 7 HOH B 37 537 158 HOH HOH . 
N 7 HOH B 38 538 40 HOH HOH . 
N 7 HOH B 39 539 11 HOH HOH . 
N 7 HOH B 40 540 27 HOH HOH . 
N 7 HOH B 41 541 105 HOH HOH . 
N 7 HOH B 42 542 136 HOH HOH . 
N 7 HOH B 43 543 36 HOH HOH . 
N 7 HOH B 44 544 181 HOH HOH . 
N 7 HOH B 45 545 58 HOH HOH . 
N 7 HOH B 46 546 52 HOH HOH . 
N 7 HOH B 47 547 90 HOH HOH . 
N 7 HOH B 48 548 109 HOH HOH . 
N 7 HOH B 49 549 66 HOH HOH . 
N 7 HOH B 50 550 189 HOH HOH . 
N 7 HOH B 51 551 125 HOH HOH . 
N 7 HOH B 52 552 30 HOH HOH . 
N 7 HOH B 53 553 111 HOH HOH . 
N 7 HOH B 54 554 16 HOH HOH . 
N 7 HOH B 55 555 3 HOH HOH . 
N 7 HOH B 56 556 72 HOH HOH . 
N 7 HOH B 57 557 42 HOH HOH . 
N 7 HOH B 58 558 120 HOH HOH . 
N 7 HOH B 59 559 156 HOH HOH . 
N 7 HOH B 60 560 86 HOH HOH . 
N 7 HOH B 61 561 142 HOH HOH . 
N 7 HOH B 62 562 22 HOH HOH . 
N 7 HOH B 63 563 157 HOH HOH . 
N 7 HOH B 64 564 172 HOH HOH . 
N 7 HOH B 65 565 163 HOH HOH . 
N 7 HOH B 66 566 15 HOH HOH . 
N 7 HOH B 67 567 119 HOH HOH . 
N 7 HOH B 68 568 185 HOH HOH . 
N 7 HOH B 69 569 187 HOH HOH . 
N 7 HOH B 70 570 188 HOH HOH . 
N 7 HOH B 71 571 106 HOH HOH . 
N 7 HOH B 72 572 60 HOH HOH . 
N 7 HOH B 73 573 174 HOH HOH . 
N 7 HOH B 74 574 190 HOH HOH . 
N 7 HOH B 75 575 78 HOH HOH . 
N 7 HOH B 76 576 137 HOH HOH . 
N 7 HOH B 77 577 178 HOH HOH . 
N 7 HOH B 78 578 68 HOH HOH . 
N 7 HOH B 79 579 167 HOH HOH . 
N 7 HOH B 80 580 110 HOH HOH . 
N 7 HOH B 81 581 147 HOH HOH . 
N 7 HOH B 82 582 149 HOH HOH . 
N 7 HOH B 83 583 152 HOH HOH . 
N 7 HOH B 84 584 168 HOH HOH . 
N 7 HOH B 85 585 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P TS6 . . . J 4 -17.494 12.024 -22.349 0.92 31.93 ? P TS6 403 B 1 
HETATM 2 O O1P TS6 . . . J 4 -18.622 11.735 -23.312 0.84 33.93 ? O1P TS6 403 B 1 
HETATM 3 S S2P TS6 . . . J 4 -16.409 10.225 -22.103 0.45 41.65 ? S2P TS6 403 B 1 
HETATM 4 O O3P TS6 . . . J 4 -16.573 13.118 -22.862 0.93 30.8 ? O3P TS6 403 B 1 
HETATM 5 O O4P TS6 . . . J 4 -18.07 12.463 -21.022 0.84 29.01 ? O4P TS6 403 B 1 
HETATM 6 H HS2P TS6 . . . J 4 -17.089 9.285 -22.395 0.94 50.04 ? HS2P TS6 403 B 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           351 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#