data_7BNL # _model_server_result.job_id nJBhD8Xs-kIgb09P-W33qA _model_server_result.datetime_utc '2024-11-19 20:39:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bnl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 7BNL # _exptl.entry_id 7BNL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BNL _cell.length_a 59.53 _cell.length_b 72.25 _cell.length_c 78.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BNL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7BNL _atom_sites.fract_transf_matrix[1][1] 0.016798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 501 NAG NAG . C 3 SO4 A 1 502 503 SO4 SO4 . D 3 SO4 A 1 503 505 SO4 SO4 . E 3 SO4 A 1 504 508 SO4 SO4 . F 3 SO4 A 1 505 509 SO4 SO4 . G 3 SO4 A 1 506 510 SO4 SO4 . H 4 DMS A 1 507 511 DMS DMS . I 4 DMS A 1 508 512 DMS DMS . J 4 DMS A 1 509 513 DMS DMS . K 5 EDO A 1 510 517 EDO EDO . L 6 U5T A 1 511 801 U5T LIG . M 3 SO4 A 1 512 1 SO4 SO4 . N 3 SO4 A 1 513 2 SO4 SO4 . O 7 HOH A 1 601 2 HOH HOH . O 7 HOH A 2 602 607 HOH HOH . O 7 HOH A 3 603 615 HOH HOH . O 7 HOH A 4 604 647 HOH HOH . O 7 HOH A 5 605 638 HOH HOH . O 7 HOH A 6 606 625 HOH HOH . O 7 HOH A 7 607 623 HOH HOH . O 7 HOH A 8 608 616 HOH HOH . O 7 HOH A 9 609 674 HOH HOH . O 7 HOH A 10 610 636 HOH HOH . O 7 HOH A 11 611 641 HOH HOH . O 7 HOH A 12 612 650 HOH HOH . O 7 HOH A 13 613 620 HOH HOH . O 7 HOH A 14 614 611 HOH HOH . O 7 HOH A 15 615 642 HOH HOH . O 7 HOH A 16 616 632 HOH HOH . O 7 HOH A 17 617 663 HOH HOH . O 7 HOH A 18 618 622 HOH HOH . O 7 HOH A 19 619 617 HOH HOH . O 7 HOH A 20 620 618 HOH HOH . O 7 HOH A 21 621 637 HOH HOH . O 7 HOH A 22 622 643 HOH HOH . O 7 HOH A 23 623 640 HOH HOH . O 7 HOH A 24 624 680 HOH HOH . O 7 HOH A 25 625 679 HOH HOH . O 7 HOH A 26 626 608 HOH HOH . O 7 HOH A 27 627 646 HOH HOH . O 7 HOH A 28 628 635 HOH HOH . O 7 HOH A 29 629 697 HOH HOH . O 7 HOH A 30 630 730 HOH HOH . O 7 HOH A 31 631 633 HOH HOH . O 7 HOH A 32 632 672 HOH HOH . O 7 HOH A 33 633 652 HOH HOH . O 7 HOH A 34 634 651 HOH HOH . O 7 HOH A 35 635 714 HOH HOH . O 7 HOH A 36 636 631 HOH HOH . O 7 HOH A 37 637 685 HOH HOH . O 7 HOH A 38 638 694 HOH HOH . O 7 HOH A 39 639 613 HOH HOH . O 7 HOH A 40 640 644 HOH HOH . O 7 HOH A 41 641 691 HOH HOH . O 7 HOH A 42 642 1 HOH HOH . O 7 HOH A 43 643 634 HOH HOH . O 7 HOH A 44 644 654 HOH HOH . O 7 HOH A 45 645 649 HOH HOH . O 7 HOH A 46 646 657 HOH HOH . O 7 HOH A 47 647 659 HOH HOH . O 7 HOH A 48 648 675 HOH HOH . O 7 HOH A 49 649 661 HOH HOH . O 7 HOH A 50 650 668 HOH HOH . O 7 HOH A 51 651 711 HOH HOH . O 7 HOH A 52 652 727 HOH HOH . O 7 HOH A 53 653 681 HOH HOH . O 7 HOH A 54 654 653 HOH HOH . O 7 HOH A 55 655 749 HOH HOH . O 7 HOH A 56 656 687 HOH HOH . O 7 HOH A 57 657 666 HOH HOH . O 7 HOH A 58 658 713 HOH HOH . O 7 HOH A 59 659 676 HOH HOH . O 7 HOH A 60 660 677 HOH HOH . O 7 HOH A 61 661 655 HOH HOH . O 7 HOH A 62 662 701 HOH HOH . O 7 HOH A 63 663 626 HOH HOH . O 7 HOH A 64 664 670 HOH HOH . O 7 HOH A 65 665 698 HOH HOH . O 7 HOH A 66 666 688 HOH HOH . O 7 HOH A 67 667 665 HOH HOH . O 7 HOH A 68 668 693 HOH HOH . O 7 HOH A 69 669 703 HOH HOH . O 7 HOH A 70 670 716 HOH HOH . O 7 HOH A 71 671 658 HOH HOH . O 7 HOH A 72 672 696 HOH HOH . O 7 HOH A 73 673 731 HOH HOH . O 7 HOH A 74 674 695 HOH HOH . O 7 HOH A 75 675 718 HOH HOH . O 7 HOH A 76 676 702 HOH HOH . O 7 HOH A 77 677 683 HOH HOH . O 7 HOH A 78 678 733 HOH HOH . O 7 HOH A 79 679 717 HOH HOH . O 7 HOH A 80 680 753 HOH HOH . O 7 HOH A 81 681 719 HOH HOH . O 7 HOH A 82 682 721 HOH HOH . O 7 HOH A 83 683 723 HOH HOH . O 7 HOH A 84 684 689 HOH HOH . O 7 HOH A 85 685 747 HOH HOH . O 7 HOH A 86 686 743 HOH HOH . O 7 HOH A 87 687 669 HOH HOH . O 7 HOH A 88 688 735 HOH HOH . O 7 HOH A 89 689 706 HOH HOH . O 7 HOH A 90 690 720 HOH HOH . O 7 HOH A 91 691 3 HOH HOH . O 7 HOH A 92 692 673 HOH HOH . O 7 HOH A 93 693 710 HOH HOH . O 7 HOH A 94 694 725 HOH HOH . O 7 HOH A 95 695 709 HOH HOH . O 7 HOH A 96 696 737 HOH HOH . O 7 HOH A 97 697 724 HOH HOH . O 7 HOH A 98 698 729 HOH HOH . O 7 HOH A 99 699 726 HOH HOH . O 7 HOH A 100 700 736 HOH HOH . O 7 HOH A 101 701 738 HOH HOH . O 7 HOH A 102 702 700 HOH HOH . O 7 HOH A 103 703 745 HOH HOH . O 7 HOH A 104 704 744 HOH HOH . O 7 HOH A 105 705 715 HOH HOH . O 7 HOH A 106 706 667 HOH HOH . O 7 HOH A 107 707 705 HOH HOH . O 7 HOH A 108 708 732 HOH HOH . O 7 HOH A 109 709 741 HOH HOH . O 7 HOH A 110 710 728 HOH HOH . O 7 HOH A 111 711 722 HOH HOH . O 7 HOH A 112 712 746 HOH HOH . O 7 HOH A 113 713 734 HOH HOH . O 7 HOH A 114 714 690 HOH HOH . O 7 HOH A 115 715 739 HOH HOH . O 7 HOH A 116 716 750 HOH HOH . O 7 HOH A 117 717 686 HOH HOH . O 7 HOH A 118 718 624 HOH HOH . O 7 HOH A 119 719 775 HOH HOH . O 7 HOH A 120 720 755 HOH HOH . O 7 HOH A 121 721 656 HOH HOH . O 7 HOH A 122 722 671 HOH HOH . O 7 HOH A 123 723 692 HOH HOH . O 7 HOH A 124 724 684 HOH HOH . O 7 HOH A 125 725 762 HOH HOH . O 7 HOH A 126 726 761 HOH HOH . O 7 HOH A 127 727 662 HOH HOH . O 7 HOH A 128 728 767 HOH HOH . O 7 HOH A 129 729 765 HOH HOH . O 7 HOH A 130 730 699 HOH HOH . O 7 HOH A 131 731 772 HOH HOH . O 7 HOH A 132 732 773 HOH HOH . O 7 HOH A 133 733 781 HOH HOH . O 7 HOH A 134 734 771 HOH HOH . O 7 HOH A 135 735 776 HOH HOH . O 7 HOH A 136 736 774 HOH HOH . O 7 HOH A 137 737 777 HOH HOH . O 7 HOH A 138 738 783 HOH HOH . O 7 HOH A 139 739 782 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . J 4 -14.01 -10.251 3.604 1 70.38 ? S DMS 509 A 1 HETATM 2 O O DMS . . . J 4 -14.874 -10.942 2.6 1 70.24 ? O DMS 509 A 1 HETATM 3 C C1 DMS . . . J 4 -15.058 -9.276 4.72 1 70.43 ? C1 DMS 509 A 1 HETATM 4 C C2 DMS . . . J 4 -13.128 -8.912 2.758 1 70.37 ? C2 DMS 509 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #