data_7BO3 # _model_server_result.job_id D07nYukJXJ1wVJBg-AKO5g _model_server_result.datetime_utc '2024-10-11 00:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bo3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":610}' # _entry.id 7BO3 # _exptl.entry_id 7BO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.466 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(2-cycloheptylethyl)-2-(1~{H}-indol-3-yl)-~{N}-methyl-ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BO3 _cell.length_a 154.51 _cell.length_b 154.51 _cell.length_c 127.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B FUC 2 B 2 FUC A 602 FUC 3 n C NAG 1 C 1 NAG A 605 NAG 3 n C NAG 2 C 2 NAG A 604 NAG 3 n C FUC 3 C 3 FUC A 606 FUC 2 n D NAG 1 D 1 NAG A 607 NAG 2 n D FUC 2 D 2 FUC A 609 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C20 H30 N2' _chem_comp.formula_weight 298.466 _chem_comp.id IA4 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(2-cycloheptylethyl)-2-(1~{H}-indol-3-yl)-~{N}-methyl-ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 IA4 sing 188 n n C13 C14 IA4 sing 189 n n C15 C14 IA4 doub 190 n y C15 N16 IA4 sing 191 n y C12 N02 IA4 sing 192 n n C14 C18 IA4 sing 193 n y N16 C17 IA4 sing 194 n y C03 N02 IA4 sing 195 n n C03 C04 IA4 sing 196 n n C18 C17 IA4 doub 197 n y C18 C19 IA4 sing 198 n y C01 N02 IA4 sing 199 n n C17 C22 IA4 sing 200 n y C19 C20 IA4 doub 201 n y C22 C21 IA4 doub 202 n y C05 C04 IA4 sing 203 n n C05 C11 IA4 sing 204 n n C05 C06 IA4 sing 205 n n C20 C21 IA4 sing 206 n y C10 C11 IA4 sing 207 n n C10 C09 IA4 sing 208 n n C07 C06 IA4 sing 209 n n C07 C08 IA4 sing 210 n n C08 C09 IA4 sing 211 n n C01 H1 IA4 sing 212 n n C01 H2 IA4 sing 213 n n C01 H3 IA4 sing 214 n n C03 H4 IA4 sing 215 n n C03 H5 IA4 sing 216 n n C04 H6 IA4 sing 217 n n C04 H7 IA4 sing 218 n n C05 H8 IA4 sing 219 n n C06 H9 IA4 sing 220 n n C06 H10 IA4 sing 221 n n C07 H11 IA4 sing 222 n n C07 H12 IA4 sing 223 n n C08 H13 IA4 sing 224 n n C08 H14 IA4 sing 225 n n C09 H15 IA4 sing 226 n n C09 H16 IA4 sing 227 n n C10 H17 IA4 sing 228 n n C10 H18 IA4 sing 229 n n C11 H19 IA4 sing 230 n n C11 H20 IA4 sing 231 n n C12 H21 IA4 sing 232 n n C12 H22 IA4 sing 233 n n C13 H23 IA4 sing 234 n n C13 H24 IA4 sing 235 n n C15 H25 IA4 sing 236 n n C19 H26 IA4 sing 237 n n C20 H27 IA4 sing 238 n n C21 H28 IA4 sing 239 n n C22 H29 IA4 sing 240 n n N16 H31 IA4 sing 241 n n # _atom_sites.entry_id 7BO3 _atom_sites.fract_transf_matrix[1][1] 0.006472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 601 603 NAG NAG . F 4 NAG A 1 602 610 NAG NAG . G 4 NAG A 1 603 611 NAG NAG . H 5 MES A 1 604 619 MES MES . I 6 SO4 A 1 605 620 SO4 SO4 . J 6 SO4 A 1 606 621 SO4 SO4 . K 6 SO4 A 1 607 622 SO4 SO4 . L 7 GOL A 1 608 624 GOL GOL . M 7 GOL A 1 609 625 GOL GOL . N 8 IA4 A 1 610 626 IA4 IA4 . O 9 SIA A 1 611 627 SIA SIA . P 6 SO4 A 1 612 1 SO4 SO4 . Q 10 HOH A 1 701 84 HOH HOH . Q 10 HOH A 2 702 45 HOH HOH . Q 10 HOH A 3 703 92 HOH HOH . Q 10 HOH A 4 704 67 HOH HOH . Q 10 HOH A 5 705 53 HOH HOH . Q 10 HOH A 6 706 3 HOH HOH . Q 10 HOH A 7 707 23 HOH HOH . Q 10 HOH A 8 708 9 HOH HOH . Q 10 HOH A 9 709 97 HOH HOH . Q 10 HOH A 10 710 91 HOH HOH . Q 10 HOH A 11 711 65 HOH HOH . Q 10 HOH A 12 712 18 HOH HOH . Q 10 HOH A 13 713 26 HOH HOH . Q 10 HOH A 14 714 93 HOH HOH . Q 10 HOH A 15 715 94 HOH HOH . Q 10 HOH A 16 716 74 HOH HOH . Q 10 HOH A 17 717 13 HOH HOH . Q 10 HOH A 18 718 69 HOH HOH . Q 10 HOH A 19 719 85 HOH HOH . Q 10 HOH A 20 720 52 HOH HOH . Q 10 HOH A 21 721 12 HOH HOH . Q 10 HOH A 22 722 14 HOH HOH . Q 10 HOH A 23 723 6 HOH HOH . Q 10 HOH A 24 724 16 HOH HOH . Q 10 HOH A 25 725 47 HOH HOH . Q 10 HOH A 26 726 41 HOH HOH . Q 10 HOH A 27 727 20 HOH HOH . Q 10 HOH A 28 728 54 HOH HOH . Q 10 HOH A 29 729 87 HOH HOH . Q 10 HOH A 30 730 10 HOH HOH . Q 10 HOH A 31 731 17 HOH HOH . Q 10 HOH A 32 732 8 HOH HOH . Q 10 HOH A 33 733 34 HOH HOH . Q 10 HOH A 34 734 7 HOH HOH . Q 10 HOH A 35 735 78 HOH HOH . Q 10 HOH A 36 736 4 HOH HOH . Q 10 HOH A 37 737 49 HOH HOH . Q 10 HOH A 38 738 42 HOH HOH . Q 10 HOH A 39 739 64 HOH HOH . Q 10 HOH A 40 740 57 HOH HOH . Q 10 HOH A 41 741 46 HOH HOH . Q 10 HOH A 42 742 51 HOH HOH . Q 10 HOH A 43 743 111 HOH HOH . Q 10 HOH A 44 744 33 HOH HOH . Q 10 HOH A 45 745 48 HOH HOH . Q 10 HOH A 46 746 38 HOH HOH . Q 10 HOH A 47 747 27 HOH HOH . Q 10 HOH A 48 748 62 HOH HOH . Q 10 HOH A 49 749 103 HOH HOH . Q 10 HOH A 50 750 22 HOH HOH . Q 10 HOH A 51 751 61 HOH HOH . Q 10 HOH A 52 752 15 HOH HOH . Q 10 HOH A 53 753 73 HOH HOH . Q 10 HOH A 54 754 70 HOH HOH . Q 10 HOH A 55 755 109 HOH HOH . Q 10 HOH A 56 756 36 HOH HOH . Q 10 HOH A 57 757 89 HOH HOH . Q 10 HOH A 58 758 79 HOH HOH . Q 10 HOH A 59 759 106 HOH HOH . Q 10 HOH A 60 760 90 HOH HOH . Q 10 HOH A 61 761 55 HOH HOH . Q 10 HOH A 62 762 37 HOH HOH . Q 10 HOH A 63 763 35 HOH HOH . Q 10 HOH A 64 764 11 HOH HOH . Q 10 HOH A 65 765 5 HOH HOH . Q 10 HOH A 66 766 56 HOH HOH . Q 10 HOH A 67 767 30 HOH HOH . Q 10 HOH A 68 768 50 HOH HOH . Q 10 HOH A 69 769 72 HOH HOH . Q 10 HOH A 70 770 82 HOH HOH . Q 10 HOH A 71 771 19 HOH HOH . Q 10 HOH A 72 772 44 HOH HOH . Q 10 HOH A 73 773 68 HOH HOH . Q 10 HOH A 74 774 66 HOH HOH . Q 10 HOH A 75 775 117 HOH HOH . Q 10 HOH A 76 776 21 HOH HOH . Q 10 HOH A 77 777 24 HOH HOH . Q 10 HOH A 78 778 39 HOH HOH . Q 10 HOH A 79 779 71 HOH HOH . Q 10 HOH A 80 780 31 HOH HOH . Q 10 HOH A 81 781 60 HOH HOH . Q 10 HOH A 82 782 25 HOH HOH . Q 10 HOH A 83 783 114 HOH HOH . Q 10 HOH A 84 784 81 HOH HOH . Q 10 HOH A 85 785 95 HOH HOH . Q 10 HOH A 86 786 59 HOH HOH . Q 10 HOH A 87 787 43 HOH HOH . Q 10 HOH A 88 788 112 HOH HOH . Q 10 HOH A 89 789 104 HOH HOH . Q 10 HOH A 90 790 119 HOH HOH . Q 10 HOH A 91 791 108 HOH HOH . Q 10 HOH A 92 792 88 HOH HOH . Q 10 HOH A 93 793 83 HOH HOH . Q 10 HOH A 94 794 63 HOH HOH . Q 10 HOH A 95 795 40 HOH HOH . Q 10 HOH A 96 796 80 HOH HOH . Q 10 HOH A 97 797 58 HOH HOH . Q 10 HOH A 98 798 115 HOH HOH . Q 10 HOH A 99 799 86 HOH HOH . Q 10 HOH A 100 800 118 HOH HOH . Q 10 HOH A 101 801 32 HOH HOH . Q 10 HOH A 102 802 2 HOH HOH . Q 10 HOH A 103 803 102 HOH HOH . Q 10 HOH A 104 804 116 HOH HOH . Q 10 HOH A 105 805 1 HOH HOH . Q 10 HOH A 106 806 29 HOH HOH . Q 10 HOH A 107 807 99 HOH HOH . Q 10 HOH A 108 808 105 HOH HOH . Q 10 HOH A 109 809 76 HOH HOH . Q 10 HOH A 110 810 107 HOH HOH . Q 10 HOH A 111 811 101 HOH HOH . Q 10 HOH A 112 812 75 HOH HOH . Q 10 HOH A 113 813 98 HOH HOH . Q 10 HOH A 114 814 28 HOH HOH . Q 10 HOH A 115 815 77 HOH HOH . Q 10 HOH A 116 816 96 HOH HOH . Q 10 HOH A 117 817 113 HOH HOH . Q 10 HOH A 118 818 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 IA4 . . . N 8 19.272 45.793 40.986 1 64.07 ? C01 IA4 610 A 1 HETATM 2 C C03 IA4 . . . N 8 20.141 43.502 40.814 1 50.68 ? C03 IA4 610 A 1 HETATM 3 C C04 IA4 . . . N 8 20.388 42.637 42.032 1 58.21 ? C04 IA4 610 A 1 HETATM 4 C C05 IA4 . . . N 8 21.618 41.725 41.937 1 56.97 ? C05 IA4 610 A 1 HETATM 5 C C06 IA4 . . . N 8 21.379 40.447 42.777 1 55.1 ? C06 IA4 610 A 1 HETATM 6 C C07 IA4 . . . N 8 22.425 39.334 42.545 1 50.98 ? C07 IA4 610 A 1 HETATM 7 C C08 IA4 . . . N 8 23.609 39.386 43.516 1 47.41 ? C08 IA4 610 A 1 HETATM 8 C C09 IA4 . . . N 8 24.392 40.728 43.533 1 49.12 ? C09 IA4 610 A 1 HETATM 9 C C10 IA4 . . . N 8 24.128 41.627 42.314 1 49.69 ? C10 IA4 610 A 1 HETATM 10 C C11 IA4 . . . N 8 22.875 42.462 42.437 1 48.69 ? C11 IA4 610 A 1 HETATM 11 C C12 IA4 . . . N 8 17.793 44.014 40.052 1 64.47 ? C12 IA4 610 A 1 HETATM 12 C C13 IA4 . . . N 8 17.522 42.512 39.905 1 49.83 ? C13 IA4 610 A 1 HETATM 13 C C14 IA4 . . . N 8 16.139 42.071 40.254 1 56.41 ? C14 IA4 610 A 1 HETATM 14 C C15 IA4 . . . N 8 14.969 42.754 39.947 1 54.62 ? C15 IA4 610 A 1 HETATM 15 C C17 IA4 . . . N 8 14.294 40.899 41.078 1 50.62 ? C17 IA4 610 A 1 HETATM 16 C C18 IA4 . . . N 8 15.731 40.882 40.984 1 47.94 ? C18 IA4 610 A 1 HETATM 17 C C19 IA4 . . . N 8 16.387 39.791 41.576 1 52.2 ? C19 IA4 610 A 1 HETATM 18 C C20 IA4 . . . N 8 15.681 38.774 42.214 1 43.02 ? C20 IA4 610 A 1 HETATM 19 C C21 IA4 . . . N 8 14.27 38.822 42.288 1 49.6 ? C21 IA4 610 A 1 HETATM 20 C C22 IA4 . . . N 8 13.563 39.866 41.731 1 45.93 ? C22 IA4 610 A 1 HETATM 21 N N02 IA4 . . . N 8 18.902 44.337 41.08 1 61.83 ? N02 IA4 610 A 1 HETATM 22 N N16 IA4 . . . N 8 13.863 42.063 40.422 1 49.53 ? N16 IA4 610 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #