data_7BO4 # _model_server_result.job_id hWeywS7Wb4pOYkLnOh0NeQ _model_server_result.datetime_utc '2024-11-27 22:01:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7BO4 # _exptl.entry_id 7BO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BO4 _cell.length_a 155.3 _cell.length_b 155.3 _cell.length_c 128.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 530 NAG 2 n B FUC 2 B 2 FUC A 531 FUC 3 n C NAG 1 C 1 NAG A 533 NAG 3 n C NAG 2 C 2 NAG A 546 NAG 3 n C FUC 3 C 3 FUC A 534 FUC 3 n D NAG 1 D 1 NAG A 535 NAG 3 n D NAG 2 D 2 NAG A 536 NAG 3 n D FUC 3 D 3 FUC A 537 FUC 2 n E NAG 1 E 1 NAG A 539 NAG 2 n E FUC 2 E 2 FUC A 540 FUC 3 n F NAG 1 F 1 NAG A 541 NAG 3 n F NAG 2 F 2 NAG A 542 NAG 3 n F FUC 3 F 3 FUC A 543 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale12 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 354 n n C1 O1 NAG sing 355 n n C1 O5 NAG sing 356 n n C1 H1 NAG sing 357 n n C2 C3 NAG sing 358 n n C2 N2 NAG sing 359 n n C2 H2 NAG sing 360 n n C3 C4 NAG sing 361 n n C3 O3 NAG sing 362 n n C3 H3 NAG sing 363 n n C4 C5 NAG sing 364 n n C4 O4 NAG sing 365 n n C4 H4 NAG sing 366 n n C5 C6 NAG sing 367 n n C5 O5 NAG sing 368 n n C5 H5 NAG sing 369 n n C6 O6 NAG sing 370 n n C6 H61 NAG sing 371 n n C6 H62 NAG sing 372 n n C7 C8 NAG sing 373 n n C7 N2 NAG sing 374 n n C7 O7 NAG doub 375 n n C8 H81 NAG sing 376 n n C8 H82 NAG sing 377 n n C8 H83 NAG sing 378 n n N2 HN2 NAG sing 379 n n O1 HO1 NAG sing 380 n n O3 HO3 NAG sing 381 n n O4 HO4 NAG sing 382 n n O6 HO6 NAG sing 383 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BO4 _atom_sites.fract_transf_matrix[1][1] 0.006439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 532 NAG NAG . H 5 MES A 1 602 538 MES MES . I 6 MOH A 1 603 544 MOH MOH . J 7 A87 A 1 604 545 A87 A87 . K 8 SIA A 1 605 547 SIA SIA . L 9 SO4 A 1 606 1 SO4 SO4 . M 9 SO4 A 1 607 2 SO4 SO4 . N 9 SO4 A 1 608 3 SO4 SO4 . O 9 SO4 A 1 609 4 SO4 SO4 . P 10 HOH A 1 701 46 HOH HOH . P 10 HOH A 2 702 51 HOH HOH . P 10 HOH A 3 703 1 HOH HOH . P 10 HOH A 4 704 12 HOH HOH . P 10 HOH A 5 705 63 HOH HOH . P 10 HOH A 6 706 62 HOH HOH . P 10 HOH A 7 707 60 HOH HOH . P 10 HOH A 8 708 75 HOH HOH . P 10 HOH A 9 709 45 HOH HOH . P 10 HOH A 10 710 32 HOH HOH . P 10 HOH A 11 711 54 HOH HOH . P 10 HOH A 12 712 88 HOH HOH . P 10 HOH A 13 713 3 HOH HOH . P 10 HOH A 14 714 70 HOH HOH . P 10 HOH A 15 715 2 HOH HOH . P 10 HOH A 16 716 19 HOH HOH . P 10 HOH A 17 717 39 HOH HOH . P 10 HOH A 18 718 50 HOH HOH . P 10 HOH A 19 719 11 HOH HOH . P 10 HOH A 20 720 56 HOH HOH . P 10 HOH A 21 721 24 HOH HOH . P 10 HOH A 22 722 29 HOH HOH . P 10 HOH A 23 723 14 HOH HOH . P 10 HOH A 24 724 52 HOH HOH . P 10 HOH A 25 725 25 HOH HOH . P 10 HOH A 26 726 16 HOH HOH . P 10 HOH A 27 727 18 HOH HOH . P 10 HOH A 28 728 36 HOH HOH . P 10 HOH A 29 729 89 HOH HOH . P 10 HOH A 30 730 28 HOH HOH . P 10 HOH A 31 731 73 HOH HOH . P 10 HOH A 32 732 22 HOH HOH . P 10 HOH A 33 733 92 HOH HOH . P 10 HOH A 34 734 13 HOH HOH . P 10 HOH A 35 735 72 HOH HOH . P 10 HOH A 36 736 93 HOH HOH . P 10 HOH A 37 737 40 HOH HOH . P 10 HOH A 38 738 78 HOH HOH . P 10 HOH A 39 739 41 HOH HOH . P 10 HOH A 40 740 20 HOH HOH . P 10 HOH A 41 741 7 HOH HOH . P 10 HOH A 42 742 31 HOH HOH . P 10 HOH A 43 743 58 HOH HOH . P 10 HOH A 44 744 42 HOH HOH . P 10 HOH A 45 745 95 HOH HOH . P 10 HOH A 46 746 23 HOH HOH . P 10 HOH A 47 747 76 HOH HOH . P 10 HOH A 48 748 38 HOH HOH . P 10 HOH A 49 749 68 HOH HOH . P 10 HOH A 50 750 37 HOH HOH . P 10 HOH A 51 751 71 HOH HOH . P 10 HOH A 52 752 30 HOH HOH . P 10 HOH A 53 753 34 HOH HOH . P 10 HOH A 54 754 47 HOH HOH . P 10 HOH A 55 755 27 HOH HOH . P 10 HOH A 56 756 26 HOH HOH . P 10 HOH A 57 757 21 HOH HOH . P 10 HOH A 58 758 33 HOH HOH . P 10 HOH A 59 759 69 HOH HOH . P 10 HOH A 60 760 77 HOH HOH . P 10 HOH A 61 761 17 HOH HOH . P 10 HOH A 62 762 6 HOH HOH . P 10 HOH A 63 763 61 HOH HOH . P 10 HOH A 64 764 15 HOH HOH . P 10 HOH A 65 765 4 HOH HOH . P 10 HOH A 66 766 57 HOH HOH . P 10 HOH A 67 767 91 HOH HOH . P 10 HOH A 68 768 90 HOH HOH . P 10 HOH A 69 769 74 HOH HOH . P 10 HOH A 70 770 94 HOH HOH . P 10 HOH A 71 771 87 HOH HOH . P 10 HOH A 72 772 43 HOH HOH . P 10 HOH A 73 773 59 HOH HOH . P 10 HOH A 74 774 8 HOH HOH . P 10 HOH A 75 775 96 HOH HOH . P 10 HOH A 76 776 9 HOH HOH . P 10 HOH A 77 777 80 HOH HOH . P 10 HOH A 78 778 66 HOH HOH . P 10 HOH A 79 779 79 HOH HOH . P 10 HOH A 80 780 44 HOH HOH . P 10 HOH A 81 781 84 HOH HOH . P 10 HOH A 82 782 53 HOH HOH . P 10 HOH A 83 783 81 HOH HOH . P 10 HOH A 84 784 64 HOH HOH . P 10 HOH A 85 785 49 HOH HOH . P 10 HOH A 86 786 48 HOH HOH . P 10 HOH A 87 787 83 HOH HOH . P 10 HOH A 88 788 86 HOH HOH . P 10 HOH A 89 789 35 HOH HOH . P 10 HOH A 90 790 55 HOH HOH . P 10 HOH A 91 791 85 HOH HOH . P 10 HOH A 92 792 5 HOH HOH . P 10 HOH A 93 793 82 HOH HOH . P 10 HOH A 94 794 65 HOH HOH . P 10 HOH A 95 795 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -8.119 46.103 15.327 1 114.72 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . G 4 -9.495 45.518 14.962 1 114.2 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . G 4 -9.33 44.132 14.327 1 117.2 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . G 4 -8.361 44.187 13.15 1 119.21 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . G 4 -7.03 44.791 13.593 1 115.43 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . G 4 -6.032 44.941 12.463 1 110.52 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . G 4 -11.193 46.431 16.495 1 114.76 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . G 4 -12.014 46.177 17.727 1 111.95 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . G 4 -10.365 45.445 16.128 1 108.49 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . G 4 -10.594 43.649 13.889 1 120.52 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . G 4 -8.148 42.884 12.614 1 113.72 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . G 4 -7.253 46.099 14.145 1 120.24 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . G 4 -6.401 45.963 11.545 1 115.22 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . G 4 -11.273 47.484 15.867 1 118.6 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #